Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g28751 Nelumbo nucifera HOM05D007327 ORTHO05D009342 3.0e-215 751.5 370 100.0
TAR628G0726 Trochodendron aralioides HOM05D007327 ORTHO05D009342 2.6e-166 589.0 355 78.9
Prupe.8G031100 Prunus persica HOM05D007327 ORTHO05D009342 5.1e-162 574.7 369 72.6
Hma1.2p1_0105F.1_g050650 Hydrangea macrophylla HOM05D007327 ORTHO05D009342 6.2e-160 567.8 351 75.5
Dinv25868 Davidia involucrata HOM05D007327 ORTHO05D009342 4.0e-159 565.1 360 75.6
Actinidia17791 Actinidia chinensis HOM05D007327 ORTHO05D009342 2.2e-157 559.3 370 71.4
GSVIVG01034535001 Vitis vinifera HOM05D007327 ORTHO05D009342 2.9e-157 558.9 351 76.4
Cfa018321 Carpinus fangiana HOM05D007327 ORTHO05D009342 7.1e-156 554.3 359 72.7
MD05G1026600 Malus domestica HOM05D007327 ORTHO05D009342 7.1e-156 554.3 369 70.7
CSS0015629 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 3.5e-155 552.0 357 72.8
Manes.18G092400 Manihot esculenta HOM05D007327 ORTHO05D009342 6.0e-155 551.2 353 73.9
RcHm_v2.0_Chr6g0275381 Rosa chinensis HOM05D007327 ORTHO05D009342 6.0e-155 551.2 354 72.0
TWI60G1090 Tripterygium wilfordii HOM05D007327 ORTHO05D009342 3.3e-153 545.4 357 71.1
CsaV3_6G005130 Cucumis sativus L. HOM05D007327 ORTHO05D009342 2.1e-152 542.7 367 69.8
FvH4_2g13700 Fragaria vesca HOM05D007327 ORTHO05D009342 2.8e-152 542.3 353 70.3
ECA247G1449 Erigeron canadensis HOM05D007327 ORTHO05D009342 1.5e-150 536.6 351 69.8
HanXRQChr04g0108941 Helianthus annuus HOM05D007327 ORTHO05D009342 8.4e-149 530.8 351 70.1
PSO541G6301 Papaver somniferum HOM05D007327 ORTHO05D009342 1.9e-148 529.6 357 71.4
CANSAT25G1895 Cannabis sativa HOM05D007327 ORTHO05D009342 3.2e-148 528.9 359 69.1
MELO3C029831.2 Cucumis melo HOM05D007327 ORTHO05D009342 3.2e-148 528.9 367 67.6
Lsat_1_v5_gn_1_6021 Lactuca sativa HOM05D007327 ORTHO05D009342 3.2e-148 528.9 350 69.1
CiPaw.15G016000 Carya illinoinensis HOM05D007327 ORTHO05D009342 2.1e-147 526.2 331 72.8
Sed0007638 Sechium edule HOM05D007327 ORTHO05D009342 3.5e-147 525.4 366 67.2
Ciclev10001558m.g Citrus clementina HOM05D007327 ORTHO05D009342 7.9e-147 524.2 367 69.2
COL.COLO4_08563 Corchorus olitorius HOM05D007327 ORTHO05D009342 3.9e-146 521.9 349 69.9
Gorai.002G114900 Gossypium raimondii HOM05D007327 ORTHO05D009342 6.7e-146 521.2 350 69.7
Peaxi162Scf00599g00511 Petunia axillaris HOM05D007327 ORTHO05D009342 6.7e-146 521.2 350 68.9
Thecc.08G153100 Theobroma cacao HOM05D007327 ORTHO05D009342 8.7e-146 520.8 355 68.5
FAN24G0347 Fragaria x ananassa HOM05D007327 ORTHO05D009342 5.7e-145 518.1 420 59.3
Gohir.D01G089200 Gossypium hirsutum HOM05D007327 ORTHO05D009342 5.7e-145 518.1 350 69.4
Atru.chr13.2102 Acer truncatum HOM05D007327 ORTHO05D009342 7.4e-145 517.7 351 70.7
Solyc04g071470.3 Solanum lycopersicum HOM05D007327 ORTHO05D009342 9.6e-145 517.3 351 68.9
FAN15G0044 Fragaria x ananassa HOM05D007327 ORTHO05D009342 3.7e-144 515.4 417 59.2
Gohir.A01G103900 Gossypium hirsutum HOM05D007327 ORTHO05D009342 3.7e-144 515.4 350 68.9
Sopen04g027430 Solanum pennellii HOM05D007327 ORTHO05D009342 4.8e-144 515.0 351 68.9
Aqoxy6G00379 Aquilegia oxysepala HOM05D007327 ORTHO05D009342 8.2e-144 514.2 322 73.9
Eucgr.F04237 Eucalyptus grandis HOM05D007327 ORTHO05D009342 4.0e-143 511.9 353 68.0
Glyma.02G081500 Glycine max HOM05D007327 ORTHO05D009342 6.9e-143 511.1 353 68.0
Oeu051268.1 Olea europaea HOM05D007327 ORTHO05D009342 6.9e-143 511.1 385 64.4
Potri.002G067900 Populus trichocarpa HOM05D007327 ORTHO05D009342 6.9e-143 511.1 356 68.8
arahy.Tifrunner.gnm1.ann1.S2I56E Arachis hypogaea HOM05D007327 ORTHO05D009342 9.0e-143 510.8 354 66.4
ATR0582G033 Amborella trichopoda HOM05D007327 ORTHO05D009342 1.7e-141 506.5 352 66.2
arahy.Tifrunner.gnm1.ann1.LUB646 Arachis hypogaea HOM05D007327 ORTHO05D009342 1.7e-141 506.5 354 66.1
HPP92_000065 Vanilla planifolia HOM05D007327 ORTHO05D009342 1.1e-140 503.8 352 67.3
Os01g0867200 Oryza sativa ssp. japonica HOM05D007327 ORTHO05D009342 1.9e-140 503.1 355 67.3
Nitab4.5_0002452g0030 Nicotiana tabacum HOM05D007327 ORTHO05D009342 5.5e-140 501.5 364 65.4
Psat1g101680 Pisum sativum HOM05D007327 ORTHO05D009342 2.7e-139 499.2 352 64.5
QL02p039069 Quercus lobata HOM05D007327 ORTHO05D009342 3.5e-139 498.8 469 54.8
Lalb_Chr19g0130241 Lupinus albus HOM05D007327 ORTHO05D009342 5.1e-138 495.0 355 65.6
Medtr6g036750 Medicago truncatula HOM05D007327 ORTHO05D009342 2.5e-137 492.7 352 63.9
Phvul.004G094900 Phaseolus vulgaris HOM05D007327 ORTHO05D009342 1.4e-135 486.9 354 64.1
SGA_v2.0_scaffold24G10336 Striga asiatica HOM05D007327 ORTHO05D009342 1.5e-134 483.4 352 65.9
TPR.G31184 Trifolium pratense HOM05D007327 ORTHO05D009342 2.0e-134 483.0 351 62.7
Lj2g0012645 Lotus japonicus HOM05D007327 ORTHO05D009342 4.5e-134 481.9 355 63.9
Zm00001eb146700 Zea mays HOM05D007327 ORTHO05D009342 1.3e-133 480.3 352 65.9
PSO675G1203 Papaver somniferum HOM05D007327 ORTHO05D009342 2.2e-133 479.6 359 66.0
Duzib093G0512 Durio zibethinus HOM05D007327 ORTHO05D009342 5.3e-127 458.4 355 63.1
PGR044G2476 Punica granatum HOM05D007327 ORTHO05D009342 7.7e-126 454.5 352 63.6
PGR100G0004 Punica granatum HOM05D007327 ORTHO05D009342 7.7e-126 454.5 352 63.6
PGR080G0004 Punica granatum HOM05D007327 ORTHO05D009342 2.9e-125 452.6 352 63.4
Hund26695 Selenicereus undatus HOM05D007327 ORTHO05D009342 6.1e-123 444.9 358 63.7
ClCG08G007070 Citrullus lanatus HOM05D007327 ORTHO05D009342 8.8e-122 441.0 472 49.8
Haze_17755 Corylus avellana HOM05D007327 ORTHO05D009342 3.7e-120 435.6 383 57.7
Cc10_g14850 Coffea canephora HOM05D007327 ORTHO05D009342 1.5e-108 397.1 286 66.4
unitig_26.g9897 Utricularia gibba HOM05D007327 ORTHO05D009342 7.7e-94 348.2 290 59.7
Pp3c20_20940 Physcomitrium patens HOM05D007327 ORTHO05D009342 4.9e-88 328.9 357 45.4
SMO335G0004 Selaginella moellendorffii HOM05D007327 ORTHO05D009342 1.6e-83 313.9 362 44.8
Sabra02G0053500 Salix brachista HOM05D007327 ORTHO05D009342 4.0e-82 309.3 242 61.6
Glyma.16G166900 Glycine max HOM05D007327 ORTHO05D009342 6.8e-82 308.5 191 72.3
SalBow7G2928 Salvia bowleyana HOM05D007327 ORTHO05D009342 4.4e-81 305.8 345 50.4
Ca_25918_v3 Cicer arietinum L. HOM05D007327 ORTHO05D009342 1.7e-77 293.9 197 67.0
VMungo0464G2010 Vigna mungo HOM05D007327 ORTHO05D009342 7.5e-73 278.5 224 59.8
AagrBONN_evm.TU.Sc2ySwM_344.2825 Anthoceros agrestis HOM05D007327 ORTHO05D009342 8.4e-64 248.4 233 52.8
DCAR_010093 Daucus carota HOM05D007327 ORTHO05D009342 7.8e-62 241.9 160 68.1
Migut.C00996 Erythranthe guttata HOM05D007327 ORTHO05D009342 1.0e-61 241.5 153 68.0
SHI09061 Sapria himalayana HOM05D007327 ORTHO05D009342 9.6e-60 235.0 249 52.6
Cpa.g.sc21.198 Carica papaya HOM05D007327 ORTHO05D009342 2.1e-54 217.2 161 66.5
Cc00_g31580 Coffea canephora HOM05D007327 ORTHO05D009342 4.3e-52 209.5 140 67.9
SMO228G0199 Selaginella moellendorffii HOM05D007327 ORTHO05D009342 2.1e-51 207.2 361 34.3
Cpa.g.c33136.2 Carica papaya HOM05D007327 ORTHO05D009342 6.9e-42 175.6 106 76.4
MCO03G524 Micromonas commoda HOM05D007327 ORTHO05D009342 1.5e-41 174.5 422 29.1
Glyma.16G166950 Glycine max HOM05D007327 ORTHO05D009342 7.9e-38 162.2 128 60.9
PRCOL_00001255 Prasinoderma coloniale HOM05D007327 ORTHO05D009342 4.8e-35 152.9 378 30.2
MBI17_g25900_MAGBIO Magnolia biondii HOM05D007327 ORTHO05D009342 1.3e-32 144.8 103 71.8
SEGI_01400 Sequoiadendron giganteum HOM05D007327 ORTHO05D009342 6.0e-30 136.0 108 55.6
MBI17_g33124_MAGBIO Magnolia biondii HOM05D007327 ORTHO05D009342 1.3e-29 134.8 114 64.0
SalBow7G1135 Salvia bowleyana HOM05D007327 ORTHO05D009342 6.7e-29 132.5 102 63.7
SEGI_20996 Sequoiadendron giganteum HOM05D007327 ORTHO05D009342 5.7e-28 129.4 108 55.6
MBI17_g33117_MAGBIO Magnolia biondii HOM05D007327 ORTHO05D009342 9.6e-28 128.6 76 69.7
CDE02G1931 Ceratophyllum demersum HOM05D007327 ORTHO05D009342 1.6e-27 127.9 69 79.7
Cc07_g11820 Coffea canephora HOM05D007327 ORTHO05D009342 5.9e-25 119.4 74 66.2
Cc10_g14400 Coffea canephora HOM05D007327 ORTHO05D009342 5.9e-25 119.4 74 66.2
Cre12.g548350 Chlamydomonas reinhardtii HOM05D007327 ORTHO05D009342 2.1e-22 110.9 294 30.6
CSS0009897 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 7.9e-22 109.0 90 61.1
CSS0013095 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 1.0e-21 108.6 83 66.3
CSS0040121 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 2.3e-21 107.5 90 61.1
CSS0048751 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 6.7e-21 105.9 90 61.1
Actinidia27255 Actinidia chinensis HOM05D007327 ORTHO05D009342 3.7e-19 100.1 164 43.3
HPP92_000064 Vanilla planifolia HOM05D007327 ORTHO05D009342 8.2e-19 99.0 76 67.1
PSO541G3507 Papaver somniferum HOM05D000022 ORTHO05D000071 1.1e-18 98.6 69 66.7
MBI17_g33120_MAGBIO Magnolia biondii HOM05D007327 ORTHO05D009342 2.4e-18 97.4 74 59.5
MBI09_g12042_MAGBIO Magnolia biondii HOM05D007327 ORTHO05D009342 5.5e-15 86.3 55 60.0
CSS0014849 Camellia sinensis var. sinensis HOM05D007327 ORTHO05D009342 9.4e-15 85.5 90 52.2
SEGI_01531 Sequoiadendron giganteum HOM05D007327 ORTHO05D009342 2.0e-12 77.8 64 51.6
arahy.Tifrunner.gnm1.ann1.B7BSQF Arachis hypogaea HOM05D000002 ORTHO05D000047 1.7e-08 64.7 126 33.3
arahy.Tifrunner.gnm1.ann1.DQ97IN Arachis hypogaea HOM05D007327 ORTHO05D009342 5.0e-08 63.2 93 37.6
arahy.Tifrunner.gnm1.ann1.KIIE1S Arachis hypogaea HOM05D000198 ORTHO05D003365 2.7e-06 57.4 56 50.0


User provided reference genes

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