Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g28724 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.8e-122 442.6 215 100.0
Nn8g40909 Nelumbo nucifera HOM05D005390 ORTHO05D007086 6.7e-106 387.5 225 86.2
Nn4g22507 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.1e-97 360.1 209 88.0
Nn5g27251 Nelumbo nucifera HOM05D005390 ORTHO05D007086 4.3e-97 358.2 210 84.8
Nn1g05493 Nelumbo nucifera HOM05D005390 ORTHO05D007086 7.4e-89 330.9 225 76.9
Nn8g39688 Nelumbo nucifera HOM05D005390 ORTHO05D007086 5.3e-87 324.7 194 84.5
TAR374G1738 Trochodendron aralioides HOM05D005390 ORTHO05D007086 7.7e-86 320.9 209 79.4
Nn1g08373 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.0e-82 310.5 177 88.1
TWI09G0451 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 2.4e-79 299.3 205 71.7
Dinv38486 Davidia involucrata HOM05D005390 ORTHO05D007086 3.1e-79 298.9 206 72.3
TWI39G0214 Tripterygium wilfordii HOM05D005390 ORTHO05D007086 7.0e-79 297.7 205 71.2
CANSAT80G2255 Cannabis sativa HOM05D005390 ORTHO05D007086 2.7e-78 295.8 206 70.9
Lj9C473T10 Lonicera japonica HOM05D005390 ORTHO05D007086 1.7e-77 293.1 208 71.6
COL.COLO4_04551 Corchorus olitorius HOM05D005390 ORTHO05D007086 2.9e-77 292.4 206 71.4
QL10p005602 Quercus lobata HOM05D005390 ORTHO05D007086 1.1e-76 290.4 206 69.4
ECA232G3921 Erigeron canadensis HOM05D005390 ORTHO05D007086 1.5e-76 290.0 206 68.9
Cc04_g10660 Coffea canephora HOM05D005390 ORTHO05D007086 2.5e-76 289.3 206 70.4
Potri.012G092000 Populus trichocarpa HOM05D005390 ORTHO05D007086 3.2e-76 288.9 204 71.1
RcHm_v2.0_Chr7g0191501 Rosa chinensis HOM05D005390 ORTHO05D007086 3.2e-76 288.9 206 69.9
GSVIVG01007574001 Vitis vinifera HOM05D005390 ORTHO05D007086 4.2e-76 288.5 204 72.1
Haze_07289 Corylus avellana HOM05D005390 ORTHO05D007086 9.4e-76 287.3 206 69.4
HanXRQChr09g0272781 Helianthus annuus HOM05D005390 ORTHO05D007086 9.4e-76 287.3 211 67.8
Aqoxy3G01354 Aquilegia oxysepala HOM05D005390 ORTHO05D007086 1.2e-75 287.0 206 71.4
Duzib205G1771 Durio zibethinus HOM05D005390 ORTHO05D007086 1.6e-75 286.6 209 70.3
Sabra12G0066700 Salix brachista HOM05D005390 ORTHO05D007086 1.6e-75 286.6 204 70.6
vmacro19255 Vaccinium macrocarpon HOM05D005390 ORTHO05D007086 2.1e-75 286.2 206 69.4
Manes.06G113700 Manihot esculenta HOM05D005390 ORTHO05D007086 3.6e-75 285.4 203 70.9
PGSC0003DMG400027069 Solanum tuberosum HOM05D005390 ORTHO05D007086 3.6e-75 285.4 206 68.0
Thecc.03G120800 Theobroma cacao HOM05D005390 ORTHO05D007086 4.7e-75 285.0 200 70.0
Cfa018904 Carpinus fangiana HOM05D005390 ORTHO05D007086 6.1e-75 284.6 206 68.9
FAN13G2995 Fragaria x ananassa HOM05D005390 ORTHO05D007086 8.0e-75 284.3 207 68.1
Rhsim08G0183100 Rhododendron simsii HOM05D005390 ORTHO05D007086 8.0e-75 284.3 206 68.9
Solyc06g071850.3 Solanum lycopersicum HOM05D005390 ORTHO05D007086 8.0e-75 284.3 200 69.0
Lalb_Chr11g0069761 Lupinus albus HOM05D005390 ORTHO05D007086 1.8e-74 283.1 206 68.4
Nitab4.5_0000003g0930 Nicotiana tabacum HOM05D005390 ORTHO05D007086 1.8e-74 283.1 206 67.0
DCAR_016426 Daucus carota HOM05D005390 ORTHO05D007086 2.3e-74 282.7 206 68.4
Sopen06g028130 Solanum pennellii HOM05D005390 ORTHO05D007086 2.3e-74 282.7 200 68.5
Atru.BG.198.p Acer truncatum HOM05D005390 ORTHO05D007086 3.0e-74 282.3 206 69.9
Thhalv10003779m.g Eutrema salsugineum HOM05D005390 ORTHO05D007086 4.0e-74 282.0 205 65.4
FAN18G2367 Fragaria x ananassa HOM05D005390 ORTHO05D007086 5.2e-74 281.6 210 67.6
ATR0824G019 Amborella trichopoda HOM05D005390 ORTHO05D007086 6.8e-74 281.2 202 68.3
CAN.G1046.1 Capsicum annuum HOM05D005390 ORTHO05D007086 6.8e-74 281.2 206 67.0
AL8G40290 Arabidopsis lyrata HOM05D005390 ORTHO05D007086 8.8e-74 280.8 205 65.4
PSO017G5335 Papaver somniferum HOM05D005390 ORTHO05D007086 8.8e-74 280.8 206 69.4
Glyma.04G191600 Glycine max HOM05D005390 ORTHO05D007086 1.2e-73 280.4 206 66.5
Hma1.2p1_0983F.1_g244080 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 1.2e-73 280.4 206 68.4
Peaxi162Scf00763g00330 Petunia axillaris HOM05D005390 ORTHO05D007086 1.2e-73 280.4 200 69.0
MD06G1160400 Malus domestica HOM05D005390 ORTHO05D007086 1.5e-73 280.0 208 68.3
FAN04G1107 Fragaria x ananassa HOM05D005390 ORTHO05D007086 2.0e-73 279.6 207 67.6
Gohir.A12G187300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 2.0e-73 279.6 200 70.5
Gorai.008G204100 Gossypium raimondii HOM05D005390 ORTHO05D007086 2.0e-73 279.6 200 70.5
Nn2g15275 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.0e-73 279.6 194 76.3
Prupe.5G160000 Prunus persica HOM05D005390 ORTHO05D007086 2.0e-73 279.6 208 67.8
Glyma.06G174300 Glycine max HOM05D005390 ORTHO05D007086 3.4e-73 278.9 206 66.0
Oeu053506.1 Olea europaea HOM05D005390 ORTHO05D007086 3.4e-73 278.9 200 71.0
PSO478G4661 Papaver somniferum HOM05D005390 ORTHO05D007086 4.4e-73 278.5 206 68.4
Sp2g26330 Schrenkiella parvula HOM05D005390 ORTHO05D007086 4.4e-73 278.5 199 67.3
Gohir.D12G190300 Gossypium hirsutum HOM05D005390 ORTHO05D007086 9.8e-73 277.3 198 70.7
Phvul.009G170000 Phaseolus vulgaris HOM05D005390 ORTHO05D007086 1.3e-72 276.9 206 65.5
Oeu011587.1 Olea europaea HOM05D005390 ORTHO05D007086 2.2e-72 276.2 206 68.4
Actinidia19375 Actinidia chinensis HOM05D005390 ORTHO05D007086 2.8e-72 275.8 197 68.5
Carub.0008s2396 Capsella rubella HOM05D005390 ORTHO05D007086 3.7e-72 275.4 205 63.9
VMungo1309G2389 Vigna mungo HOM05D005390 ORTHO05D007086 3.7e-72 275.4 204 65.2
Nitab4.5_0014349g0010 Nicotiana tabacum HOM05D005390 ORTHO05D007086 6.3e-72 274.6 206 65.0
arahy.Tifrunner.gnm1.ann1.V8X883 Arachis hypogaea HOM05D005390 ORTHO05D007086 8.3e-72 274.2 198 66.7
Ca_16101_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 1.1e-71 273.9 204 66.2
Ca_30077_v3 Cicer arietinum L. HOM05D005390 ORTHO05D007086 1.1e-71 273.9 204 66.2
Lj1g0026120 Lotus japonicus HOM05D005390 ORTHO05D007086 1.1e-71 273.9 206 65.5
Aa31LG1G18770 Aethionema arabicum HOM05D005390 ORTHO05D007086 1.4e-71 273.5 202 63.9
Medtr3g075240 Medicago truncatula HOM05D005390 ORTHO05D007086 1.4e-71 273.5 204 65.2
Sed0027546 Sechium edule HOM05D005390 ORTHO05D007086 1.4e-71 273.5 206 63.1
AUR62025748 Chenopodium quinoa HOM05D005390 ORTHO05D007086 2.4e-71 272.7 205 68.8
AUR62001260 Chenopodium quinoa HOM05D005390 ORTHO05D007086 3.1e-71 272.3 205 68.3
arahy.Tifrunner.gnm1.ann1.EKVH9G Arachis hypogaea HOM05D005390 ORTHO05D007086 4.1e-71 271.9 204 65.7
Lsat_1_v5_gn_4_78320 Lactuca sativa HOM05D005390 ORTHO05D007086 5.4e-71 271.6 208 65.4
Psat5g139480 Pisum sativum HOM05D005390 ORTHO05D007086 5.4e-71 271.6 198 67.7
THA.LOC104818200 Tarenaya hassleriana HOM05D005390 ORTHO05D007086 5.4e-71 271.6 206 64.6
ClCG03G003390 Citrullus lanatus HOM05D005390 ORTHO05D007086 1.2e-70 270.4 206 64.1
MELO3C002325.2 Cucumis melo HOM05D005390 ORTHO05D007086 3.5e-70 268.9 200 64.5
CsaV3_1G009190 Cucumis sativus L. HOM05D005390 ORTHO05D007086 4.5e-70 268.5 206 63.1
EL10Ac7g18053 Beta vulgaris HOM05D005390 ORTHO05D007086 1.7e-69 266.5 205 66.3
Eucgr.B00166 Eucalyptus grandis HOM05D005390 ORTHO05D007086 1.7e-69 266.5 206 64.1
SGA_v2.0_scaffold25G10792 Striga asiatica HOM05D005390 ORTHO05D007086 2.2e-69 266.2 200 64.0
MSTRG.11518 Avicennia marina HOM05D005390 ORTHO05D007086 5.0e-69 265.0 206 63.6
TPR.G38664 Trifolium pratense HOM05D005390 ORTHO05D007086 8.5e-69 264.2 230 57.8
SEGI_06673 Sequoiadendron giganteum HOM05D005390 ORTHO05D007086 4.7e-67 258.5 206 64.1
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 1.0e-66 257.3 198 62.1
Ciclev10019194m.g Citrus clementina HOM05D005390 ORTHO05D007086 1.8e-66 256.5 209 63.2
FAN08G1670 Fragaria x ananassa HOM05D005390 ORTHO05D007086 8.8e-66 254.2 210 62.9
Hund05621 Selenicereus undatus HOM05D005390 ORTHO05D007086 4.4e-65 251.9 204 63.2
Zm00001eb144210 Zea mays HOM05D005390 ORTHO05D007086 2.8e-64 249.2 199 60.8
AT5G63200 Arabidopsis thaliana HOM05D005390 ORTHO05D007086 6.3e-64 248.1 178 66.9
Cpa.g.sc4.44 Carica papaya HOM05D005390 ORTHO05D007086 1.8e-63 246.5 174 67.2
C09p09230 Brassica napus HOM05D005390 ORTHO05D007086 1.7e-61 240.0 171 66.7
BolC9t53836H Brassica oleracea HOM05D005390 ORTHO05D007086 1.7e-61 240.0 171 66.7
unitig_22.g5443 Utricularia gibba HOM05D005390 ORTHO05D007086 3.8e-61 238.8 206 57.3
BraA09t36469Z Brassica rapa HOM05D005390 ORTHO05D007086 2.5e-60 236.1 173 65.3
A09p08180 Brassica napus HOM05D005390 ORTHO05D007086 1.2e-59 233.8 173 65.3
HPP92_001962 Vanilla planifolia HOM05D005390 ORTHO05D007086 1.2e-59 233.8 209 56.0
AagrBONN_evm.TU.Sc2ySwM_228.344 Anthoceros agrestis HOM05D005390 ORTHO05D007086 5.7e-57 224.9 207 55.6
Mapoly0013s0178 Marchantia polymorpha HOM05D005390 ORTHO05D007086 1.3e-56 223.8 205 55.1
SalBow5G1843 Salvia bowleyana HOM05D005390 ORTHO05D007086 3.7e-56 222.2 229 52.0
SMO356G0210 Selaginella moellendorffii HOM05D005390 ORTHO05D007086 2.4e-55 219.5 198 56.1
Os01g0906600 Oryza sativa ssp. japonica HOM05D005390 ORTHO05D007086 3.2e-55 219.2 195 54.9
Nn8g40618 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.7e-48 196.8 125 81.6
CSS0013940 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 2.9e-48 196.1 142 70.4
FvH4_5g07030 Fragaria vesca HOM05D005390 ORTHO05D007086 1.2e-46 190.7 143 65.7
Sc22g0003910 Simmondsia chinensis HOM05D005390 ORTHO05D007086 1.5e-44 183.7 142 66.2
Nn1g03252 Nelumbo nucifera HOM05D005390 ORTHO05D007086 1.4e-34 150.6 93 86.0
Nn7g37481 Nelumbo nucifera HOM05D005390 ORTHO05D007086 6.8e-34 148.3 76 93.4
Nn1g06247 Nelumbo nucifera HOM05D005390 ORTHO05D007086 2.2e-32 143.3 97 78.4
Nn6g32370 Nelumbo nucifera HOM05D005390 ORTHO05D007086 3.8e-32 142.5 76 88.2
CiPaw.12G034500 Carya illinoinensis HOM05D005390 ORTHO05D007086 3.2e-31 139.4 97 73.2
Nn5g26726 Nelumbo nucifera HOM05D005390 ORTHO05D007086 8.6e-29 131.3 71 93.0
Nn2g14552 Nelumbo nucifera HOM05D005390 ORTHO05D028071 6.4e-24 115.2 87 65.5
CAN.G1302.1 Capsicum annuum HOM05D005390 ORTHO05D002902 1.1e-20 104.4 71 60.6
CAN.G534.23 Capsicum annuum HOM05D005390 ORTHO05D007086 6.2e-19 98.6 74 56.8
Migut.O00224 Erythranthe guttata HOM05D005390 ORTHO05D007086 8.1e-19 98.2 54 79.6
CSS0032502 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.2e-17 94.4 76 64.5
CSS0049807 Camellia sinensis var. sinensis HOM05D005390 ORTHO05D007086 1.2e-17 94.4 76 64.5
CARHR277060 Cardamine hirsuta HOM05D005390 ORTHO05D007086 7.6e-17 91.7 64 62.5
RcHm_v2.0_Chr5g0027621 Rosa chinensis HOM05D005390 ORTHO05D007086 9.9e-17 91.3 75 61.3
CsaV3_3G015420 Cucumis sativus L. HOM05D005390 ORTHO05D007086 1.6e-14 84.0 57 66.7
CiPaw.12G034400 Carya illinoinensis HOM05D005390 ORTHO05D007086 3.0e-13 79.7 55 67.3
Hma1.2p1_2683F.1_g326880 Hydrangea macrophylla HOM05D005390 ORTHO05D007086 3.9e-13 79.3 64 60.9
TAR381G0053 Trochodendron aralioides HOM05D000018 ORTHO05D001172 5.6e-12 75.5 76 50.0
CAN.G755.13 Capsicum annuum HOM05D005390 ORTHO05D007086 2.1e-11 73.6 47 68.1
A06p18430 Brassica napus HOM05D005390 ORTHO05D028071 3.6e-11 72.8 44 68.2
A09p53940 Brassica napus HOM05D005390 ORTHO05D028071 1.4e-10 70.9 43 67.4
BraA09t40810Z Brassica rapa HOM05D005390 ORTHO05D028071 1.4e-10 70.9 43 67.4


User provided reference genes

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