Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g28655 Nelumbo nucifera HOM05D007108 ORTHO05D009128 1.9e-144 515.8 256 100.0
TAR628G0410 Trochodendron aralioides HOM05D007108 ORTHO05D009128 3.9e-113 411.8 255 80.4
CSS0020358 Camellia sinensis var. sinensis HOM05D007108 ORTHO05D009128 9.1e-110 400.6 241 80.5
CSS0038886 Camellia sinensis var. sinensis HOM05D007108 ORTHO05D009128 1.3e-108 396.7 255 76.9
GSVIVG01010051001 Vitis vinifera HOM05D007108 ORTHO05D009128 8.5e-108 394.0 246 78.0
Prupe.8G021900 Prunus persica HOM05D007108 ORTHO05D009128 1.2e-106 390.2 235 80.0
Actinidia29517 Actinidia chinensis HOM05D007108 ORTHO05D009128 6.1e-106 387.9 246 78.0
Aqoxy5G02215 Aquilegia oxysepala HOM05D007108 ORTHO05D009128 8.0e-106 387.5 226 81.9
vmacro13384 Vaccinium macrocarpon HOM05D007108 ORTHO05D009128 1.4e-105 386.7 253 76.3
Gohir.A05G242100 Gossypium hirsutum HOM05D007108 ORTHO05D009128 1.8e-105 386.3 240 79.2
Peaxi162Scf00263g00613 Petunia axillaris HOM05D007108 ORTHO05D009128 1.8e-105 386.3 245 77.1
Manes.18G088801 Manihot esculenta HOM05D007108 ORTHO05D009128 4.0e-105 385.2 243 77.4
Thecc.08G146100 Theobroma cacao HOM05D007108 ORTHO05D009128 1.2e-104 383.6 240 78.3
CANSAT25G1119 Cannabis sativa HOM05D007108 ORTHO05D009128 2.6e-104 382.5 224 81.2
MD05G1017900 Malus domestica HOM05D007108 ORTHO05D009128 2.6e-104 382.5 215 83.7
Gohir.D05G243400 Gossypium hirsutum HOM05D007108 ORTHO05D009128 3.3e-104 382.1 240 78.3
QL02p024940 Quercus lobata HOM05D007108 ORTHO05D009128 3.3e-104 382.1 228 79.4
Haze_17721 Corylus avellana HOM05D007108 ORTHO05D009128 4.4e-104 381.7 255 73.7
Migut.C01030 Erythranthe guttata HOM05D007108 ORTHO05D009128 5.7e-104 381.3 255 74.9
Duzib116G0089 Durio zibethinus HOM05D007108 ORTHO05D009128 9.7e-104 380.6 241 77.2
Gorai.009G252700 Gossypium raimondii HOM05D007108 ORTHO05D009128 1.3e-103 380.2 240 77.9
Sed0009335 Sechium edule HOM05D007108 ORTHO05D009128 3.7e-103 378.6 250 75.6
Ciclev10002261m.g Citrus clementina HOM05D007108 ORTHO05D009128 8.2e-103 377.5 228 80.7
Potri.002G071000 Populus trichocarpa HOM05D007108 ORTHO05D009128 1.1e-102 377.1 254 75.2
Eucgr.F02729 Eucalyptus grandis HOM05D007108 ORTHO05D009128 1.8e-102 376.3 250 76.0
Sopen04g026870 Solanum pennellii HOM05D007108 ORTHO05D009128 2.4e-102 375.9 248 76.6
Rhsim07G0025600 Rhododendron simsii HOM05D007108 ORTHO05D009128 4.1e-102 375.2 247 74.5
Atru.chr13.2257 Acer truncatum HOM05D007108 ORTHO05D009128 1.2e-101 373.6 230 78.7
MSTRG.1369 Avicennia marina HOM05D007108 ORTHO05D009128 2.0e-101 372.9 254 73.2
TWI34G1539 Tripterygium wilfordii HOM05D007108 ORTHO05D009128 5.9e-101 371.3 236 75.0
VMungo1309G2491 Vigna mungo HOM05D007108 ORTHO05D009128 5.9e-101 371.3 220 80.0
Glyma.04G239800 Glycine max HOM05D007108 ORTHO05D009128 7.7e-101 370.9 246 74.4
Oeu000778.2 Olea europaea HOM05D007108 ORTHO05D009128 7.7e-101 370.9 284 66.5
Solyc04g064930.3 Solanum lycopersicum HOM05D007108 ORTHO05D009128 1.0e-100 370.5 248 75.0
Cc10_g14220 Coffea canephora HOM05D007108 ORTHO05D009128 1.3e-100 370.2 202 84.2
Glyma.06G124100 Glycine max HOM05D007108 ORTHO05D009128 1.7e-100 369.8 243 74.5
FvH4_2g14420 Fragaria vesca HOM05D007108 ORTHO05D009128 2.2e-100 369.4 224 78.6
Phvul.009G136100 Phaseolus vulgaris HOM05D007108 ORTHO05D009128 5.0e-100 368.2 220 80.0
Hma1.2p1_0107F.1_g051540 Hydrangea macrophylla HOM05D007108 ORTHO05D009128 8.5e-100 367.5 222 78.8
RcHm_v2.0_Chr6g0276751 Rosa chinensis HOM05D007108 ORTHO05D009128 1.5e-99 366.7 212 81.6
CsaV3_7G024840 Cucumis sativus L. HOM05D007108 ORTHO05D009128 1.9e-99 366.3 221 79.2
ClCG09G009870 Citrullus lanatus HOM05D007108 ORTHO05D009128 4.2e-99 365.2 246 73.2
THA.LOC104812052 Tarenaya hassleriana HOM05D007108 ORTHO05D009128 4.2e-99 365.2 253 71.5
CARHR021740 Cardamine hirsuta HOM05D007108 ORTHO05D009128 7.2e-99 364.4 253 73.5
ECA232G2155 Erigeron canadensis HOM05D007108 ORTHO05D009128 7.2e-99 364.4 249 71.1
Lj1g0003350 Lotus japonicus HOM05D007108 ORTHO05D009128 2.1e-98 362.8 246 73.2
PSO063G1249 Papaver somniferum HOM05D007108 ORTHO05D009128 2.1e-98 362.8 251 70.9
CAN.G1564.2 Capsicum annuum HOM05D007108 ORTHO05D009128 6.1e-98 361.3 251 72.1
HanXRQChr16g0500661 Helianthus annuus HOM05D007108 ORTHO05D009128 1.0e-97 360.5 196 84.7
Sc02g0004350 Simmondsia chinensis HOM05D007108 ORTHO05D009128 1.0e-97 360.5 244 72.1
Thhalv10008558m.g Eutrema salsugineum HOM05D007108 ORTHO05D009128 1.4e-97 360.1 254 72.0
PSO782G4411 Papaver somniferum HOM05D007108 ORTHO05D009128 1.4e-97 360.1 251 70.5
Ca_16662_v3 Cicer arietinum L. HOM05D007108 ORTHO05D009128 2.3e-97 359.4 248 72.6
CDE08G0865 Ceratophyllum demersum HOM05D007108 ORTHO05D009128 4.0e-97 358.6 254 71.7
Lalb_Chr11g0066481 Lupinus albus HOM05D007108 ORTHO05D009128 6.8e-97 357.8 221 78.3
Carub.0001s2075 Capsella rubella HOM05D007108 ORTHO05D009128 1.2e-96 357.1 233 74.2
BraA06t24837Z Brassica rapa HOM05D007108 ORTHO05D009128 1.5e-96 356.7 250 71.6
Sp1g18900 Schrenkiella parvula HOM05D007108 ORTHO05D009128 2.0e-96 356.3 252 71.4
BcaC05g26041 Brassica carinata HOM05D007108 ORTHO05D009128 2.6e-96 355.9 235 74.5
A06p17400 Brassica napus HOM05D007108 ORTHO05D009128 2.6e-96 355.9 253 70.8
Aa31LG7G5350 Aethionema arabicum HOM05D007108 ORTHO05D009128 3.4e-96 355.5 250 72.0
BcaB07g32123 Brassica carinata HOM05D007108 ORTHO05D009128 5.7e-96 354.8 255 70.6
BolC5t30716H Brassica oleracea HOM05D007108 ORTHO05D009128 1.7e-95 353.2 235 74.0
AL1G34450 Arabidopsis lyrata HOM05D007108 ORTHO05D009128 2.8e-95 352.4 253 71.1
Cpa.g.sc49.50 Carica papaya HOM05D007108 ORTHO05D009128 2.8e-95 352.4 203 80.8
AT1G21350 Arabidopsis thaliana HOM05D007108 ORTHO05D009128 3.7e-95 352.1 195 84.1
TPR.G18750 Trifolium pratense HOM05D007108 ORTHO05D009128 6.3e-95 351.3 194 84.5
Medtr3g090490 Medicago truncatula HOM05D007108 ORTHO05D009128 1.1e-94 350.5 241 73.9
DCAR_010274 Daucus carota HOM05D007108 ORTHO05D009128 2.4e-94 349.4 229 73.4
COL.COLO4_06005 Corchorus olitorius HOM05D007108 ORTHO05D009128 7.0e-94 347.8 248 72.6
Lsat_1_v5_gn_9_77661 Lactuca sativa HOM05D007108 ORTHO05D009128 1.2e-93 347.1 254 69.7
Nitab4.5_0000299g0220 Nicotiana tabacum HOM05D007108 ORTHO05D009128 1.3e-92 343.6 250 71.2
Os07g0260300 Oryza sativa ssp. japonica HOM05D007108 ORTHO05D009128 1.3e-92 343.6 191 81.7
arahy.Tifrunner.gnm1.ann1.3M80B2 Arachis hypogaea HOM05D007108 ORTHO05D009128 2.8e-90 335.9 233 71.7
SEGI_12340 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 6.1e-90 334.7 234 67.5
C05p20230 Brassica napus HOM05D007108 ORTHO05D009128 2.3e-89 332.8 226 73.5
CiPaw.16G016700 Carya illinoinensis HOM05D007108 ORTHO05D009128 3.4e-88 328.9 215 74.4
EL10Ac1g01484 Beta vulgaris HOM05D007108 ORTHO05D009128 4.9e-87 325.1 249 67.1
ATR1136G010 Amborella trichopoda HOM05D007108 ORTHO05D009128 8.3e-87 324.3 250 66.8
arahy.Tifrunner.gnm1.ann1.QUZ9E8 Arachis hypogaea HOM05D007108 ORTHO05D009128 7.0e-86 321.2 261 64.8
Dinv41114 Davidia involucrata HOM05D007108 ORTHO05D009128 7.0e-86 321.2 213 76.1
SGA_v2.0_scaffold24G10368 Striga asiatica HOM05D007108 ORTHO05D009128 2.7e-85 319.3 230 73.9
FAN20G1168 Fragaria x ananassa HOM05D007108 ORTHO05D009128 1.5e-83 313.5 219 71.2
SEGI_05187 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 1.2e-82 310.5 190 73.2
Actinidia01141 Actinidia chinensis HOM05D007108 ORTHO05D009128 4.0e-81 305.4 199 74.4
Psat5g082320 Pisum sativum HOM05D007108 ORTHO05D009128 3.2e-78 295.8 215 69.3
CBR_g41654 Chara braunii HOM05D007108 ORTHO05D009128 2.7e-77 292.7 240 60.0
AUR62026764 Chenopodium quinoa HOM05D007108 ORTHO05D009128 6.0e-77 291.6 232 65.1
Pp3c20_22500 Physcomitrium patens HOM05D007108 ORTHO05D009128 6.0e-77 291.6 192 67.7
Pp3c23_490 Physcomitrium patens HOM05D007108 ORTHO05D009128 3.6e-74 282.3 178 69.1
AagrBONN_evm.TU.Sc2ySwM_117.292 Anthoceros agrestis HOM05D007108 ORTHO05D009128 6.8e-73 278.1 247 57.5
Sabra02G0055700 Salix brachista HOM05D007108 ORTHO05D009128 1.5e-72 276.9 235 63.8
unitig_26.g9907 Utricularia gibba HOM05D007108 ORTHO05D009128 1.2e-69 267.3 252 57.9
MELO3C024103.2 Cucumis melo HOM05D007108 ORTHO05D009128 2.1e-66 256.5 176 73.3
AUR62013508 Chenopodium quinoa HOM05D007108 ORTHO05D009128 1.4e-65 253.8 261 57.1
SMO228G0194 Selaginella moellendorffii HOM05D007108 ORTHO05D009128 1.2e-64 250.8 148 77.7
PSO384G3614 Papaver somniferum HOM05D007108 ORTHO05D009128 2.8e-58 229.6 216 57.9
FAN15G3050 Fragaria x ananassa HOM05D007108 ORTHO05D009128 1.1e-57 227.6 218 56.9
FAN24G1879 Fragaria x ananassa HOM05D007108 ORTHO05D009128 1.1e-57 227.6 218 57.3
SMO347G0599 Selaginella moellendorffii HOM05D007108 ORTHO05D009128 9.9e-56 221.1 173 60.7
Nitab4.5_0000427g0030 Nicotiana tabacum HOM05D007108 ORTHO05D009128 4.9e-55 218.8 137 77.4
Cre17.g715500 Chlamydomonas reinhardtii HOM05D007108 ORTHO05D009128 1.1e-51 207.6 214 49.5
Lj7A366T74 Lonicera japonica HOM05D007108 ORTHO05D009128 5.3e-49 198.7 200 55.5
Zm00001eb097150 Zea mays HOM05D007108 ORTHO05D009128 1.9e-46 190.3 162 61.1
HanXRQChr03g0063741 Helianthus annuus HOM05D007108 ORTHO05D009128 1.6e-45 187.2 103 80.6
SEGI_19863 Sequoiadendron giganteum HOM05D007108 ORTHO05D009128 1.4e-41 174.1 105 76.2
SMO228G0031 Selaginella moellendorffii HOM05D007108 ORTHO05D009128 2.0e-40 170.2 149 51.7
Psat7g065200 Pisum sativum HOM05D007108 ORTHO05D009128 9.6e-27 124.8 70 77.1
Psat2g167120 Pisum sativum HOM05D007108 ORTHO05D003402 2.8e-26 123.2 71 84.5
Ca_16660_v3 Cicer arietinum L. HOM05D006773 ORTHO05D008775 2.4e-25 120.2 193 40.4
Dinv25820 Davidia involucrata HOM05D007108 ORTHO05D009128 2.0e-16 90.5 57 78.9


User provided reference genes

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