Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g28652 Nelumbo nucifera HOM05D006006 ORTHO05D007566 2.2e-196 688.7 335 100.0
Nn1g06190 Nelumbo nucifera HOM05D006006 ORTHO05D007566 1.1e-166 590.1 344 83.7
TAR381G0495 Trochodendron aralioides HOM05D006006 ORTHO05D007566 1.6e-162 576.2 346 80.9
GSVIVG01010048001 Vitis vinifera HOM05D006006 ORTHO05D007566 5.3e-158 561.2 346 78.0
Cpa.g.sc49.54 Carica papaya HOM05D006006 ORTHO05D007566 1.5e-152 543.1 346 74.9
Thecc.08G145800 Theobroma cacao HOM05D006006 ORTHO05D007566 7.4e-152 540.8 345 74.5
Duzib093G0547 Durio zibethinus HOM05D006006 ORTHO05D007566 3.1e-150 535.4 345 73.0
MBI03_g11319_MAGBIO Magnolia biondii HOM05D006006 ORTHO05D007566 3.1e-150 535.4 340 75.9
COL.COLO4_04848 Corchorus olitorius HOM05D006006 ORTHO05D007566 3.4e-149 531.9 347 73.8
PSO675G8728 Papaver somniferum HOM05D006006 ORTHO05D007566 2.2e-148 529.3 340 75.9
Cfa018352 Carpinus fangiana HOM05D006006 ORTHO05D007566 1.9e-147 526.2 336 74.4
Aqoxy6G00385 Aquilegia oxysepala HOM05D006006 ORTHO05D007566 2.5e-147 525.8 346 73.7
PSO541G2188 Papaver somniferum HOM05D006006 ORTHO05D007566 3.2e-147 525.4 340 75.3
Prupe.8G021400 Prunus persica HOM05D006006 ORTHO05D007566 5.5e-147 524.6 343 74.3
PGR042G3502 Punica granatum HOM05D006006 ORTHO05D007566 7.1e-147 524.2 347 74.4
CSS0044653 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 1.2e-146 523.5 344 73.0
CSS0049727 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 2.7e-146 522.3 344 72.7
FvH4_2g14460 Fragaria vesca HOM05D006006 ORTHO05D007566 1.0e-145 520.4 343 72.6
QL02p024995 Quercus lobata HOM05D006006 ORTHO05D007566 3.9e-145 518.5 348 72.7
FAN24G1565 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.1e-144 516.9 343 72.0
Lj7A365T41 Lonicera japonica HOM05D006006 ORTHO05D007566 1.9e-144 516.2 341 72.7
PGSC0003DMG400017575 Solanum tuberosum HOM05D006006 ORTHO05D007566 3.3e-144 515.4 340 72.6
FAN15G3392 Fragaria x ananassa HOM05D006006 ORTHO05D007566 4.3e-144 515.0 343 71.7
Gorai.005G081300 Gossypium raimondii HOM05D006006 ORTHO05D007566 4.3e-144 515.0 345 71.6
MD05G1017500 Malus domestica HOM05D006006 ORTHO05D007566 4.3e-144 515.0 343 73.5
CiPaw.15G020800 Carya illinoinensis HOM05D006006 ORTHO05D007566 5.7e-144 514.6 348 73.0
THA.LOC104813696 Tarenaya hassleriana HOM05D006006 ORTHO05D007566 5.7e-144 514.6 343 73.2
RcHm_v2.0_Chr6g0276791 Rosa chinensis HOM05D006006 ORTHO05D007566 7.4e-144 514.2 339 72.9
Gohir.D02G072100 Gossypium hirsutum HOM05D006006 ORTHO05D007566 3.7e-143 511.9 345 71.0
MD10G1017500 Malus domestica HOM05D006006 ORTHO05D007566 4.8e-143 511.5 343 72.9
TWI34G1885 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 4.8e-143 511.5 343 71.7
FAN27G0920 Fragaria x ananassa HOM05D006006 ORTHO05D007566 8.2e-143 510.8 343 70.8
Sopen06g020580 Solanum pennellii HOM05D006006 ORTHO05D007566 1.1e-142 510.4 340 72.4
Haze_17707 Corylus avellana HOM05D006006 ORTHO05D007566 1.4e-142 510.0 366 69.1
Solyc06g060460.3 Solanum lycopersicum HOM05D006006 ORTHO05D007566 1.4e-142 510.0 340 72.6
Nitab4.5_0000633g0110 Nicotiana tabacum HOM05D006006 ORTHO05D007566 3.1e-142 508.8 341 72.4
Gohir.A02G066200 Gossypium hirsutum HOM05D006006 ORTHO05D007566 4.1e-142 508.4 345 70.7
Glyma.13G039000 Glycine max HOM05D006006 ORTHO05D007566 1.5e-141 506.5 348 69.0
Oeu051259.1 Olea europaea HOM05D006006 ORTHO05D007566 1.5e-141 506.5 333 73.6
Ciclev10001700m.g Citrus clementina HOM05D006006 ORTHO05D007566 2.0e-141 506.1 348 69.5
TWI60G1394 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 2.0e-141 506.1 346 70.5
Manes.02G175900 Manihot esculenta HOM05D006006 ORTHO05D007566 2.6e-141 505.8 346 69.9
Gorai.013G105300 Gossypium raimondii HOM05D006006 ORTHO05D007566 3.4e-141 505.4 344 70.9
Potri.002G071300 Populus trichocarpa HOM05D006006 ORTHO05D007566 3.4e-141 505.4 333 73.0
CiPaw.16G016900 Carya illinoinensis HOM05D006006 ORTHO05D007566 4.5e-141 505.0 346 71.4
Eucgr.F04261 Eucalyptus grandis HOM05D006006 ORTHO05D007566 5.9e-141 504.6 346 69.7
Glyma.14G123000 Glycine max HOM05D006006 ORTHO05D007566 5.9e-141 504.6 348 68.1
FAN20G0686 Fragaria x ananassa HOM05D006006 ORTHO05D007566 7.6e-141 504.2 374 65.8
Gohir.D03G061500 Gossypium hirsutum HOM05D006006 ORTHO05D007566 7.6e-141 504.2 344 71.2
Atru.chr13.1712 Acer truncatum HOM05D006006 ORTHO05D007566 1.0e-140 503.8 345 70.7
CAN.G62.45 Capsicum annuum HOM05D006006 ORTHO05D007566 2.5e-139 499.2 342 71.6
DCAR_008158 Daucus carota HOM05D006006 ORTHO05D007566 1.6e-138 496.5 343 69.1
Sabra02G0056100 Salix brachista HOM05D006006 ORTHO05D007566 2.7e-138 495.7 333 71.5
Lalb_Chr04g0263651 Lupinus albus HOM05D006006 ORTHO05D007566 6.1e-138 494.6 345 68.4
Thhalv10008107m.g Eutrema salsugineum HOM05D006006 ORTHO05D007566 7.9e-138 494.2 346 71.1
CsaV3_7G024870 Cucumis sativus L. HOM05D006006 ORTHO05D007566 1.0e-137 493.8 348 70.4
CANSAT25G3881 Cannabis sativa HOM05D006006 ORTHO05D007566 3.0e-137 492.3 345 67.8
ATR1136G139 Amborella trichopoda HOM05D006006 ORTHO05D007566 3.9e-137 491.9 341 69.2
ClCG09G009860 Citrullus lanatus HOM05D006006 ORTHO05D007566 3.9e-137 491.9 348 69.8
MSTRG.24200 Avicennia marina HOM05D006006 ORTHO05D007566 5.1e-137 491.5 334 70.7
Phvul.001G072900 Phaseolus vulgaris HOM05D006006 ORTHO05D007566 5.1e-137 491.5 347 68.6
Sed0017044 Sechium edule HOM05D006006 ORTHO05D007566 9.7e-136 487.3 348 69.0
Os04g0438500 Oryza sativa ssp. japonica HOM05D006006 ORTHO05D007566 2.8e-135 485.7 345 69.9
Carub.0001s2078 Capsella rubella HOM05D006006 ORTHO05D007566 3.7e-135 485.3 344 69.5
Oeu014478.2 Olea europaea HOM05D006006 ORTHO05D007566 3.7e-135 485.3 360 66.9
CARHR021760 Cardamine hirsuta HOM05D006006 ORTHO05D007566 2.4e-134 482.6 341 70.4
Ah.01g005030 Amaranthus hybridus HOM05D006006 ORTHO05D007566 9.1e-134 480.7 344 68.3
Sp1g18920 Schrenkiella parvula HOM05D006006 ORTHO05D007566 1.2e-133 480.3 347 69.5
HanXRQChr04g0109001 Helianthus annuus HOM05D006006 ORTHO05D007566 2.0e-133 479.6 345 67.0
arahy.Tifrunner.gnm1.ann1.D9Y8GI Arachis hypogaea HOM05D006006 ORTHO05D007566 2.6e-133 479.2 350 66.0
EL10Ac9g20647 Beta vulgaris HOM05D006006 ORTHO05D007566 2.6e-133 479.2 344 67.4
Lj1g0023019 Lotus japonicus HOM05D006006 ORTHO05D007566 2.6e-133 479.2 349 67.3
AT1G21370 Arabidopsis thaliana HOM05D006006 ORTHO05D007566 3.4e-133 478.8 344 70.1
BcaB07g32125 Brassica carinata HOM05D006006 ORTHO05D007566 3.4e-133 478.8 334 71.9
Aa31LG7G5530 Aethionema arabicum HOM05D006006 ORTHO05D007566 4.5e-133 478.4 346 67.9
arahy.Tifrunner.gnm1.ann1.T5RWDG Arachis hypogaea HOM05D006006 ORTHO05D007566 5.0e-132 474.9 350 65.1
HPP92_004629 Vanilla planifolia HOM05D006006 ORTHO05D007566 5.0e-132 474.9 346 65.6
Cc10_g14250 Coffea canephora HOM05D006006 ORTHO05D007566 1.9e-131 473.0 321 69.8
Medtr1g029000 Medicago truncatula HOM05D006006 ORTHO05D007566 4.2e-131 471.9 343 66.8
A06p17420 Brassica napus HOM05D006006 ORTHO05D007566 7.2e-131 471.1 346 68.8
C05p20260 Brassica napus HOM05D006006 ORTHO05D007566 9.4e-131 470.7 350 68.9
BolC5t30719H Brassica oleracea HOM05D006006 ORTHO05D007566 9.4e-131 470.7 350 68.9
BraA06t24839Z Brassica rapa HOM05D006006 ORTHO05D007566 9.4e-131 470.7 349 69.1
BcaC05g26044 Brassica carinata HOM05D006006 ORTHO05D007566 2.1e-130 469.5 350 68.9
Psat0s5561g0040 Pisum sativum HOM05D006006 ORTHO05D007566 7.9e-130 467.6 344 66.9
MELO3C023695.2 Cucumis melo HOM05D006006 ORTHO05D007566 1.0e-129 467.2 407 60.2
HanXRQChr08g0217661 Helianthus annuus HOM05D006006 ORTHO05D007566 6.7e-129 464.5 351 65.2
TPR.G33300 Trifolium pratense HOM05D006006 ORTHO05D007566 2.0e-128 463.0 338 67.2
Lj4A692T31 Lonicera japonica HOM05D006006 ORTHO05D007566 4.4e-128 461.8 339 66.1
Zm00001eb422860 Zea mays HOM05D006006 ORTHO05D007566 7.4e-128 461.1 349 66.8
Migut.N03230 Erythranthe guttata HOM05D006006 ORTHO05D007566 1.3e-127 460.3 340 67.6
AL1G34470 Arabidopsis lyrata HOM05D006006 ORTHO05D007566 2.2e-127 459.5 301 74.1
Ca_12665_v3 Cicer arietinum L. HOM05D006006 ORTHO05D007566 2.2e-127 459.5 342 66.1
VMungo0647G2124 Vigna mungo HOM05D006006 ORTHO05D007566 2.2e-127 459.5 328 68.3
BcaB03g12819 Brassica carinata HOM05D006006 ORTHO05D007566 6.9e-126 454.5 343 66.5
Lsat_1_v5_gn_1_8980 Lactuca sativa HOM05D006006 ORTHO05D007566 6.9e-126 454.5 291 74.2
unitig_21.g20180 Utricularia gibba HOM05D006006 ORTHO05D007566 2.9e-124 449.1 344 63.4
Actinidia15154 Actinidia chinensis HOM05D006006 ORTHO05D007566 2.5e-123 446.0 282 76.2
C08p20770 Brassica napus HOM05D006006 ORTHO05D007566 3.2e-123 445.7 323 68.1
unitig_744.g24565 Utricularia gibba HOM05D006006 ORTHO05D007566 7.2e-123 444.5 338 65.1
CDE06G2625 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 2.9e-116 422.5 250 77.2
SHI09110 Sapria himalayana HOM05D006006 ORTHO05D007566 1.1e-115 420.6 329 63.8
Peaxi162Scf00051g00516 Petunia axillaris HOM05D006006 ORTHO05D007566 1.6e-114 416.8 233 81.5
CDE08G1689 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 5.2e-113 411.8 250 75.6
BolC8t49716H Brassica oleracea HOM05D006006 ORTHO05D007566 6.7e-113 411.4 324 63.0
ECA247G2705 Erigeron canadensis HOM05D006006 ORTHO05D007566 4.4e-112 408.7 243 76.5
Mapoly0050s0105 Marchantia polymorpha HOM05D006006 ORTHO05D007566 7.2e-107 391.3 302 63.9
SEGI_37970 Sequoiadendron giganteum HOM05D006006 ORTHO05D007566 8.0e-106 387.9 330 60.9
Dinv25817 Davidia involucrata HOM05D006006 ORTHO05D007566 2.0e-104 383.3 251 75.3
BcaC07g39093 Brassica carinata HOM05D006006 ORTHO05D007566 3.2e-99 365.9 324 60.2
Pp3c25_12020 Physcomitrium patens HOM05D006006 ORTHO05D007566 1.8e-97 360.1 330 56.4
C06p40100 Brassica napus HOM05D006006 ORTHO05D007566 1.7e-92 343.6 232 70.7
Gohir.A02G108508 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.5e-88 330.5 241 69.7
Gohir.A02G108509 Gossypium hirsutum HOM05D006006 ORTHO05D007566 1.5e-88 330.5 241 69.7
Sc02g0004370 Simmondsia chinensis HOM05D006006 ORTHO05D007566 5.7e-88 328.6 240 68.3
Nitab4.5_0008475g0010 Nicotiana tabacum HOM05D006006 ORTHO05D007566 4.9e-87 325.5 237 70.5
Pp3c6_4630 Physcomitrium patens HOM05D006006 ORTHO05D007566 2.0e-85 320.1 329 52.3
SMO228G0011 Selaginella moellendorffii HOM05D006006 ORTHO05D007566 6.6e-84 315.1 244 61.5
SGA_v2.0_scaffold25G11170 Striga asiatica HOM05D006006 ORTHO05D007566 1.6e-82 310.5 238 66.8
TAR625G0955 Trochodendron aralioides HOM05D006006 ORTHO05D007566 5.1e-68 262.3 165 75.8
AagrBONN_evm.TU.Sc2ySwM_344.2333 Anthoceros agrestis HOM05D006006 ORTHO05D007566 1.1e-65 254.6 171 71.3
MCO04G174 Micromonas commoda HOM05D006006 ORTHO05D007566 1.9e-59 233.8 246 48.0
AUR62025132 Chenopodium quinoa HOM05D006006 ORTHO05D007566 9.6e-59 231.5 200 59.5
AUR62037127 Chenopodium quinoa HOM05D006006 ORTHO05D007566 9.6e-59 231.5 200 60.0
PRCOL_00006391 Prasinoderma coloniale HOM05D006006 ORTHO05D007566 5.1e-52 209.1 201 50.7
Cre02.g116000 Chlamydomonas reinhardtii HOM05D006006 ORTHO05D007566 2.5e-51 206.8 180 58.9
Pp3c5_24650 Physcomitrium patens HOM05D006006 ORTHO05D007566 7.6e-48 195.3 174 60.3
Ah.02g110550 Amaranthus hybridus HOM05D006006 ORTHO05D007566 9.7e-27 125.2 73 82.2
SGA_v2.0_scaffold35G14089 Striga asiatica HOM05D006006 ORTHO05D007566 2.8e-26 123.6 94 63.8
CDE04G1521 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 7.4e-19 99.0 57 73.7
Pp3c16_22840 Physcomitrium patens HOM05D006006 ORTHO05D318415 9.1e-09 65.5 53 58.5


User provided reference genes

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