Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g28612 Nelumbo nucifera HOM05D005086 ORTHO05D005980 1.1e-112 409.8 196 100.0
Nn1g06227 Nelumbo nucifera HOM05D005086 ORTHO05D005980 3.3e-91 338.6 204 78.9
TAR625G0035 Trochodendron aralioides HOM05D005086 ORTHO05D005980 1.8e-86 322.8 205 76.6
Aqoxy6G00340 Aquilegia oxysepala HOM05D005086 ORTHO05D005980 2.0e-80 302.8 211 70.6
Hma1.2p1_0107F.1_g051390 Hydrangea macrophylla HOM05D005086 ORTHO05D005980 8.6e-76 287.3 208 70.2
Peaxi162Scf00263g00031 Petunia axillaris HOM05D005086 ORTHO05D005980 1.2e-74 283.5 210 67.6
Nitab4.5_0000445g0110 Nicotiana tabacum HOM05D005086 ORTHO05D005980 5.2e-73 278.1 210 65.2
Actinidia15165 Actinidia chinensis HOM05D005086 ORTHO05D005980 6.8e-73 277.7 208 69.7
PGSC0003DMG400024814 Solanum tuberosum HOM05D005086 ORTHO05D005980 3.4e-72 275.4 207 66.2
Nitab4.5_0004095g0020 Nicotiana tabacum HOM05D005086 ORTHO05D005980 5.8e-72 274.6 210 65.2
Ciclev10001104m.g Citrus clementina HOM05D005086 ORTHO05D005980 7.5e-72 274.2 205 64.9
Potri.002G072300 Populus trichocarpa HOM05D005086 ORTHO05D005980 2.2e-71 272.7 212 65.1
Cfa018373 Carpinus fangiana HOM05D005086 ORTHO05D005980 2.9e-71 272.3 209 65.1
Solyc04g064680.4 Solanum lycopersicum HOM05D005086 ORTHO05D005980 2.9e-71 272.3 192 68.8
Haze_17696 Corylus avellana HOM05D006773 ORTHO05D005980 3.7e-71 271.9 209 65.6
Actinidia16590 Actinidia chinensis HOM05D005086 ORTHO05D005980 1.1e-70 270.4 208 67.3
Ah.05g167500 Amaranthus hybridus HOM05D005086 ORTHO05D005980 1.4e-70 270.0 209 67.9
CAN.G2.46 Capsicum annuum HOM05D005086 ORTHO05D005980 1.4e-70 270.0 195 67.7
Manes.02G174400 Manihot esculenta HOM05D005086 ORTHO05D005980 1.9e-70 269.6 210 63.3
Sabra02G0056900 Salix brachista HOM05D005086 ORTHO05D005980 2.4e-70 269.2 212 65.1
Aa31LG7G5420 Aethionema arabicum HOM05D005086 ORTHO05D005980 3.2e-70 268.9 211 65.4
CSS0007222 Camellia sinensis var. sinensis HOM05D005086 ORTHO05D005980 4.1e-70 268.5 210 66.2
AUR62027615 Chenopodium quinoa HOM05D005086 ORTHO05D005980 9.2e-70 267.3 207 66.2
Thhalv10007584m.g Eutrema salsugineum HOM05D005086 ORTHO05D005980 9.2e-70 267.3 210 62.9
CiPaw.16G018300 Carya illinoinensis HOM05D005086 ORTHO05D005980 1.2e-69 266.9 209 63.2
Lsat_1_v5_gn_6_96840 Lactuca sativa HOM05D005086 ORTHO05D005980 2.1e-69 266.2 219 62.6
Manes.18G086500 Manihot esculenta HOM05D005086 ORTHO05D005980 2.1e-69 266.2 210 64.3
Sopen04g026640 Solanum pennellii HOM05D005086 ORTHO05D005980 2.1e-69 266.2 232 59.5
Rhsim11G0077300 Rhododendron simsii HOM05D005086 ORTHO05D005980 6.0e-69 264.6 207 66.7
AT1G21480 Arabidopsis thaliana HOM05D005086 ORTHO05D005980 7.8e-69 264.2 212 62.7
THA.LOC104812071 Tarenaya hassleriana HOM05D005086 ORTHO05D005980 7.8e-69 264.2 208 63.0
Hund26734 Selenicereus undatus HOM05D005086 ORTHO05D005980 1.0e-68 263.8 208 62.0
GSVIVG01010019001 Vitis vinifera HOM05D005086 ORTHO05D005980 1.0e-68 263.8 209 62.2
AL1G34590 Arabidopsis lyrata HOM05D005086 ORTHO05D005980 1.3e-68 263.5 212 63.2
Gorai.005G082700 Gossypium raimondii HOM05D005086 ORTHO05D005980 1.3e-68 263.5 207 63.8
Lalb_Chr20g0118701 Lupinus albus HOM05D005086 ORTHO05D005980 1.7e-68 263.1 189 67.2
Thecc.08G143300 Theobroma cacao HOM05D005086 ORTHO05D005980 1.7e-68 263.1 208 62.5
Cc10_g12980 Coffea canephora HOM05D005086 ORTHO05D005980 2.3e-68 262.7 201 64.7
Gohir.A02G067100 Gossypium hirsutum HOM05D005086 ORTHO05D005980 3.0e-68 262.3 207 62.8
THA.LOC104810043 Tarenaya hassleriana HOM05D005086 ORTHO05D005980 3.0e-68 262.3 210 62.9
CANSAT80G0700 Cannabis sativa HOM05D005086 ORTHO05D005980 5.0e-68 261.5 208 62.0
CiPaw.15G022200 Carya illinoinensis HOM05D005086 ORTHO05D005980 5.0e-68 261.5 210 61.0
A06p17510 Brassica napus HOM05D005086 ORTHO05D005980 8.6e-68 260.8 209 61.7
TWI74G0391 Tripterygium wilfordii HOM05D005086 ORTHO05D005980 8.6e-68 260.8 207 60.9
CSS0017168 Camellia sinensis var. sinensis HOM05D005086 ORTHO05D005980 1.1e-67 260.4 213 62.0
Sp1g19010 Schrenkiella parvula HOM05D005086 ORTHO05D005980 1.1e-67 260.4 210 61.4
BraA06t24847Z Brassica rapa HOM05D005086 ORTHO05D005980 1.5e-67 260.0 209 61.2
ClCG08G006410 Citrullus lanatus HOM05D005086 ORTHO05D005980 1.5e-67 260.0 208 61.5
Sabra05G0143000 Salix brachista HOM05D005086 ORTHO05D005980 1.5e-67 260.0 189 66.7
CDE08G1021 Ceratophyllum demersum HOM05D005086 ORTHO05D005980 1.9e-67 259.6 203 65.0
MELO3C008415.2 Cucumis melo HOM05D005086 ORTHO05D005980 1.9e-67 259.6 208 60.1
Carub.0001s2088 Capsella rubella HOM05D005086 ORTHO05D005980 2.5e-67 259.2 211 61.6
CsaV3_6G031010 Cucumis sativus L. HOM05D005086 ORTHO05D005980 2.5e-67 259.2 210 61.0
BcaC07g39103 Brassica carinata HOM05D005086 ORTHO05D005980 3.3e-67 258.8 194 63.4
C08p20850 Brassica napus HOM05D005086 ORTHO05D005980 3.3e-67 258.8 194 63.4
PGR044G0933 Punica granatum HOM05D005086 ORTHO05D005980 3.3e-67 258.8 205 62.9
BcaC05g26055 Brassica carinata HOM05D005086 ORTHO05D005980 4.3e-67 258.5 209 60.3
C05p20340 Brassica napus HOM05D005086 ORTHO05D005980 4.3e-67 258.5 209 60.3
BolC5t30730H Brassica oleracea HOM05D005086 ORTHO05D005980 4.3e-67 258.5 209 60.3
BraA08t34827Z Brassica rapa HOM05D005086 ORTHO05D005980 4.3e-67 258.5 194 64.9
vmacro00876 Vaccinium macrocarpon HOM05D005086 ORTHO05D005980 4.3e-67 258.5 208 64.4
Atru.chr13.1691 Acer truncatum HOM05D005086 ORTHO05D005980 5.6e-67 258.1 212 61.8
A08p28940 Brassica napus HOM05D005086 ORTHO05D005980 5.6e-67 258.1 194 64.4
vmacro00889 Vaccinium macrocarpon HOM05D005086 ORTHO05D005980 7.3e-67 257.7 207 64.3
QL02p025654 Quercus lobata HOM05D005086 ORTHO05D005980 9.5e-67 257.3 211 62.1
CARHR021850 Cardamine hirsuta HOM05D005086 ORTHO05D005980 1.2e-66 256.9 208 61.1
Eucgr.E02380 Eucalyptus grandis HOM05D005086 ORTHO05D005980 1.2e-66 256.9 192 64.6
BcaB07g32137 Brassica carinata HOM05D005086 ORTHO05D005980 1.6e-66 256.5 209 60.3
Potri.005G187400 Populus trichocarpa HOM05D005086 ORTHO05D005980 1.6e-66 256.5 191 64.9
BolC8t49724H Brassica oleracea HOM05D005086 ORTHO05D005980 2.1e-66 256.1 194 63.4
Prupe.8G017900 Prunus persica HOM05D005086 ORTHO05D005980 2.1e-66 256.1 212 61.8
HanXRQChr05g0160791 Helianthus annuus HOM05D005086 ORTHO05D005980 4.7e-66 255.0 207 59.9
BcaB03g12814 Brassica carinata HOM05D000987 ORTHO05D005980 6.2e-66 254.6 188 64.4
Migut.C01051 Erythranthe guttata HOM05D005086 ORTHO05D005980 1.1e-65 253.8 193 66.3
AUR62030231 Chenopodium quinoa HOM05D005086 ORTHO05D005980 1.4e-65 253.4 226 61.9
Duzib093G1227 Durio zibethinus HOM05D005086 ORTHO05D005980 1.8e-65 253.1 208 62.0
PSO541G4886 Papaver somniferum HOM05D005086 ORTHO05D005980 2.3e-65 252.7 203 63.1
Cpa.g.sc49.73 Carica papaya HOM05D005086 ORTHO05D005980 3.1e-65 252.3 195 62.6
Oeu025719.1 Olea europaea HOM05D005086 ORTHO05D005980 3.1e-65 252.3 195 63.1
Duzib116G0169 Durio zibethinus HOM05D005086 ORTHO05D005980 4.0e-65 251.9 208 61.5
MSTRG.25335 Avicennia marina HOM05D005086 ORTHO05D005980 5.2e-65 251.5 192 64.6
COL.COLO4_33183 Corchorus olitorius HOM05D005086 ORTHO05D005980 8.9e-65 250.8 207 60.4
PSO675G1430 Papaver somniferum HOM05D005086 ORTHO05D005980 1.5e-64 250.0 202 62.4
Sed0007666 Sechium edule HOM05D005086 ORTHO05D005980 2.0e-64 249.6 208 60.6
arahy.Tifrunner.gnm1.ann1.1CL4KB Arachis hypogaea HOM05D005086 ORTHO05D005980 2.6e-64 249.2 188 64.4
arahy.Tifrunner.gnm1.ann1.AQ25H9 Arachis hypogaea HOM05D005086 ORTHO05D005980 2.6e-64 249.2 188 64.4
MSTRG.1377 Avicennia marina HOM05D005086 ORTHO05D005980 2.6e-64 249.2 189 65.6
RcHm_v2.0_Chr1g0331511 Rosa chinensis HOM05D005086 ORTHO05D005980 4.4e-64 248.4 209 59.8
DCAR_001547 Daucus carota HOM05D005086 ORTHO05D005980 2.9e-63 245.7 206 62.1
MD05G1012600 Malus domestica HOM05D005086 ORTHO05D005980 3.7e-63 245.4 211 59.2
SalBow7G2754 Salvia bowleyana HOM05D005086 ORTHO05D005980 6.4e-63 244.6 188 64.9
ATR1136G054 Amborella trichopoda HOM05D005086 ORTHO05D005980 1.9e-62 243.0 201 60.2
MD10G1012500 Malus domestica HOM05D005086 ORTHO05D005980 5.4e-62 241.5 211 59.7
Oeu046001.1 Olea europaea HOM05D005086 ORTHO05D005980 2.7e-61 239.2 243 51.9
FAN15G0455 Fragaria x ananassa HOM05D005086 ORTHO05D005980 4.6e-61 238.4 214 58.4
FAN20G2551 Fragaria x ananassa HOM05D005086 ORTHO05D005980 4.6e-61 238.4 214 57.9
Dinv41130 Davidia involucrata HOM05D005086 ORTHO05D005980 7.8e-61 237.7 141 77.3
Thecc.08G143500 Theobroma cacao HOM05D005086 ORTHO05D005980 2.3e-60 236.1 208 55.8
FvH4_2g14790 Fragaria vesca HOM05D005086 ORTHO05D005980 3.9e-60 235.3 214 57.5
FAN24G0253 Fragaria x ananassa HOM05D006773 ORTHO05D005980 3.9e-60 235.3 214 57.5
MBI06_g46897_MAGBIO Magnolia biondii HOM05D005086 ORTHO05D005980 6.6e-60 234.6 198 63.6
MBI06_g43016_MAGBIO Magnolia biondii HOM05D005086 ORTHO05D005980 1.1e-59 233.8 177 67.2
Psat6g040360 Pisum sativum HOM05D005086 ORTHO05D005980 2.5e-59 232.6 202 59.4
RcHm_v2.0_Chr6g0277351 Rosa chinensis HOM05D005086 ORTHO05D005980 3.3e-59 232.3 207 57.5
Medtr1g029350 Medicago truncatula HOM05D005086 ORTHO05D005980 5.6e-59 231.5 206 58.7
Ca_12658_v3 Cicer arietinum L. HOM05D005086 ORTHO05D005980 1.2e-58 230.3 208 57.7
Lj4A690G48 Lonicera japonica HOM05D005086 ORTHO05D005980 3.6e-58 228.8 286 47.9
Duzib041G0632 Durio zibethinus HOM05D005086 ORTHO05D005980 1.1e-57 227.3 194 57.7
SGA_v2.0_scaffold24G10385 Striga asiatica HOM05D005086 ORTHO05D005980 4.0e-57 225.3 238 52.5
EL10As10g23958 Beta vulgaris HOM05D005086 ORTHO05D005980 4.4e-56 221.9 180 64.4
Glyma.14G202400 Glycine max HOM05D005086 ORTHO05D005980 1.7e-55 219.9 206 57.8
Lj2g0027047 Lotus japonicus HOM05D005086 ORTHO05D005980 2.9e-55 219.2 204 57.4
PSO675G6807 Papaver somniferum HOM05D005086 ORTHO05D005980 3.8e-55 218.8 209 55.0
HPP92_013480 Vanilla planifolia HOM05D005086 ORTHO05D005980 8.4e-55 217.6 192 57.3
SEGI_35480 Sequoiadendron giganteum HOM05D005086 ORTHO05D005980 2.4e-54 216.1 192 57.8
unitig_82.g27089 Utricularia gibba HOM05D005086 ORTHO05D005980 4.2e-54 215.3 204 54.9
COL.COLO4_09224 Corchorus olitorius HOM05D005086 ORTHO05D005980 6.0e-53 211.5 194 56.2
Lj1g0013822 Lotus japonicus HOM05D005086 ORTHO05D005980 6.0e-53 211.5 188 57.4
SGA_v2.0_scaffold48G17939 Striga asiatica HOM05D005086 ORTHO05D005980 6.6e-52 208.0 198 58.1
VMungo0647G0181 Vigna mungo HOM05D005086 ORTHO05D005980 1.4e-49 200.3 206 52.4
Zm00001eb147610 Zea mays HOM05D005086 ORTHO05D005980 2.4e-49 199.5 188 55.3
SHI09476 Sapria himalayana HOM05D005086 ORTHO05D005980 1.2e-48 197.2 223 47.5
COL.COLO4_26591 Corchorus olitorius HOM05D005086 ORTHO05D005980 9.9e-48 194.1 163 57.7
SMO174G0205 Selaginella moellendorffii HOM05D005086 ORTHO05D005980 1.3e-42 177.2 146 56.2
Pp3c14_16130 Physcomitrium patens HOM05D005086 ORTHO05D005980 6.2e-42 174.9 140 55.0
Sc20g0003350 Simmondsia chinensis HOM05D005086 ORTHO05D005980 3.9e-36 155.6 82 85.4
Gohir.D02G073300 Gossypium hirsutum HOM05D005086 ORTHO05D005980 4.3e-35 152.1 82 82.9
AagrBONN_evm.TU.Sc2ySwM_228.5615 Anthoceros agrestis HOM05D005086 ORTHO05D005980 1.8e-33 146.7 241 37.8
Phvul.001G063800 Phaseolus vulgaris HOM05D005086 ORTHO05D005980 2.0e-32 143.3 82 75.6
TPR.G33329 Trifolium pratense HOM05D005086 ORTHO05D005980 2.1e-29 133.3 149 51.7
Sed0020214 Sechium edule HOM05D005086 ORTHO05D005980 1.1e-22 110.9 66 72.7
SEGI_18713 Sequoiadendron giganteum HOM05D005086 ORTHO05D005980 2.5e-22 109.8 66 74.2
MBI06_g41412_MAGBIO Magnolia biondii HOM05D005086 ORTHO05D005980 1.2e-21 107.5 62 77.4
Peaxi162Scf00263g00036 Petunia axillaris HOM05D005086 ORTHO05D005980 7.9e-21 104.8 82 61.0
CDE08G1464 Ceratophyllum demersum HOM05D005086 ORTHO05D005980 2.6e-16 89.7 117 45.3
TAR381G1299 Trochodendron aralioides HOM05D005086 ORTHO05D005980 2.9e-15 86.3 88 51.1
Actinidia30526 Actinidia chinensis HOM05D005086 ORTHO05D057522 3.9e-12 75.9 124 37.9
ECA246G0400 Erigeron canadensis HOM05D006773 ORTHO05D005980 1.1e-09 67.8 33 75.8
MBI06_g35967_MAGBIO Magnolia biondii HOM05D005086 ORTHO05D005980 1.3e-07 60.8 44 63.6
HanXRQChr01g0019561 Helianthus annuus HOM05D000001 ORTHO05D001247 1.1e-06 57.8 116 31.9
VMungo1383G3398 Vigna mungo HOM05D000191 ORTHO05D000122 2.5e-06 56.6 107 32.7


User provided reference genes

Program Settings