Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g28555 Nelumbo nucifera HOM05D000311 ORTHO05D012563 4.6e-103 378.6 316 100.0
Nn5g28557 Nelumbo nucifera HOM05D000311 ORTHO05D000183 7.4e-69 265.0 214 82.7
Nn5g28521 Nelumbo nucifera HOM05D000311 ORTHO05D000183 3.9e-62 242.7 214 80.4
Nn5g28559 Nelumbo nucifera HOM05D000311 ORTHO05D000183 8.4e-57 224.9 175 90.3
Nn5g27816 Nelumbo nucifera HOM05D000311 ORTHO05D000183 1.4e-19 101.3 171 36.8
MBI04_g21137_MAGBIO Magnolia biondii HOM05D000311 ORTHO05D000183 4.4e-13 79.7 212 49.1
Nn1g06211 Nelumbo nucifera HOM05D000311 ORTHO05D000183 3.1e-11 73.6 77 53.2
Nitab4.5_0000131g0130 Nicotiana tabacum HOM05D000311 ORTHO05D000183 2.7e-10 70.5 165 52.1
Gorai.004G051800 Gossypium raimondii HOM05D000311 ORTHO05D000183 3.5e-10 70.1 220 28.2
HanXRQChr04g0097701 Helianthus annuus HOM05D000311 ORTHO05D000183 3.8e-09 66.6 241 24.5
Cc10_g08420 Coffea canephora HOM05D000311 ORTHO05D000183 5.0e-09 66.2 74 50.0
Sopen04g006530 Solanum pennellii HOM05D000311 ORTHO05D000183 8.6e-09 65.5 71 47.9
Nitab4.5_0010327g0010 Nicotiana tabacum HOM05D000311 ORTHO05D000183 1.1e-08 65.1 49 59.2
Nitab4.5_0000348g0230 Nicotiana tabacum HOM05D000311 ORTHO05D000183 1.9e-08 64.3 47 59.6
Peaxi162Scf01205g00183 Petunia axillaris HOM05D000311 ORTHO05D000183 1.9e-08 64.3 54 51.9
QL93p0073_1273 Quercus lobata HOM05D000311 ORTHO05D000183 1.9e-08 64.3 224 44.6
CAN.G525.20 Capsicum annuum HOM05D000311 ORTHO05D000183 2.5e-08 63.9 47 61.7
Solyc08g016310.3 Solanum lycopersicum HOM05D000311 ORTHO05D000183 2.5e-08 63.9 47 59.6
CARHR218490 Cardamine hirsuta HOM05D000311 ORTHO05D000183 3.3e-08 63.5 211 27.5
Sopen08g006550 Solanum pennellii HOM05D000311 ORTHO05D000183 4.2e-08 63.2 47 55.3
ATR1146G001 Amborella trichopoda HOM05D016351 ORTHO05D012563 5.6e-08 62.8 45 60.0
Solyc08g016210.3 Solanum lycopersicum HOM05D000311 ORTHO05D000183 5.6e-08 62.8 47 55.3
PGSC0003DMG400032785 Solanum tuberosum HOM05D000311 ORTHO05D000183 5.6e-08 62.8 47 55.3
CAN.G525.22 Capsicum annuum HOM05D000311 ORTHO05D000183 9.5e-08 62.0 47 55.3
Solyc04g014400.4 Solanum lycopersicum HOM05D000311 ORTHO05D000183 9.5e-08 62.0 47 57.4
ATR0564G122 Amborella trichopoda HOM05D016351 ORTHO05D012563 1.6e-07 61.2 88 35.2
CAN.G3566.2 Capsicum annuum HOM05D000311 ORTHO05D000183 1.6e-07 61.2 47 61.7
CAN.G525.24 Capsicum annuum HOM05D000311 ORTHO05D000183 1.6e-07 61.2 47 61.7
CAN.G525.26 Capsicum annuum HOM05D000311 ORTHO05D000183 1.6e-07 61.2 47 61.7
CsaV3_7G032230 Cucumis sativus L. HOM05D000311 ORTHO05D000183 2.1e-07 60.8 44 61.4
PGSC0003DMG400005590 Solanum tuberosum HOM05D000311 ORTHO05D000183 2.1e-07 60.8 47 53.2
AL1G17540 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 2.8e-07 60.5 50 54.0
Thecc.06G032600 Theobroma cacao HOM05D000311 ORTHO05D000183 2.8e-07 60.5 212 28.8
ATR0177G028 Amborella trichopoda HOM05D017909 ORTHO05D012563 3.6e-07 60.1 187 47.6
A08p26580 Brassica napus HOM05D000311 ORTHO05D000183 3.6e-07 60.1 72 38.9
BraA08t34610Z Brassica rapa HOM05D000311 ORTHO05D000183 3.6e-07 60.1 72 38.9
A09p66470 Brassica napus HOM05D000311 ORTHO05D000183 4.7e-07 59.7 72 40.3
Nitab4.5_0001621g0050 Nicotiana tabacum HOM05D000311 ORTHO05D000183 4.7e-07 59.7 47 57.4
Nitab4.5_0007230g0030 Nicotiana tabacum HOM05D000311 ORTHO05D000183 4.7e-07 59.7 47 53.2
Oeu011159.1 Olea europaea HOM05D000311 ORTHO05D000183 4.7e-07 59.7 52 53.8
Sed0026723 Sechium edule HOM05D000311 ORTHO05D000183 4.7e-07 59.7 48 50.0
TWI60G1606 Tripterygium wilfordii HOM05D000311 ORTHO05D000183 4.7e-07 59.7 214 45.3
AL1G17310 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 6.1e-07 59.3 54 48.1
AL3G12670 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 6.1e-07 59.3 54 48.1
Haze_08222 Corylus avellana HOM05D000311 ORTHO05D000183 6.1e-07 59.3 74 39.2
Gorai.004G053700 Gossypium raimondii HOM05D000311 ORTHO05D000183 6.1e-07 59.3 57 52.6
Nitab4.5_0004349g0020 Nicotiana tabacum HOM05D000311 ORTHO05D000183 6.1e-07 59.3 45 55.6
C03p73420 Brassica napus HOM05D000311 ORTHO05D000183 8.0e-07 58.9 42 57.1
CARHR006900 Cardamine hirsuta HOM05D000311 ORTHO05D000183 8.0e-07 58.9 54 46.3
Duzib168G1287 Durio zibethinus HOM05D000311 ORTHO05D000183 8.0e-07 58.9 46 56.5
Nitab4.5_0002569g0050 Nicotiana tabacum HOM05D000311 ORTHO05D000183 8.0e-07 58.9 45 55.6
PGSC0003DMG400030150 Solanum tuberosum HOM05D000311 ORTHO05D000183 8.0e-07 58.9 60 46.7
AL1G17550 Arabidopsis lyrata HOM05D000311 ORTHO05D000183 1.0e-06 58.5 40 62.5
AT1G07390 Arabidopsis thaliana HOM05D000311 ORTHO05D000183 1.0e-06 58.5 40 62.5
arahy.Tifrunner.gnm1.ann1.978HCZ Arachis hypogaea HOM05D000311 ORTHO05D000183 1.0e-06 58.5 214 36.4
arahy.Tifrunner.gnm1.ann1.IS23K0 Arachis hypogaea HOM05D000311 ORTHO05D000183 1.0e-06 58.5 45 57.8
BcaC01g01646 Brassica carinata HOM05D000311 ORTHO05D000183 1.0e-06 58.5 72 37.5
Gohir.D08G053700 Gossypium hirsutum HOM05D000311 ORTHO05D000183 1.0e-06 58.5 62 50.0
Oeu010082.1 Olea europaea HOM05D000311 ORTHO05D000183 1.0e-06 58.5 43 60.5
Peaxi162Scf00454g00117 Petunia axillaris HOM05D000311 ORTHO05D000183 1.0e-06 58.5 74 43.2
ATR0918G001 Amborella trichopoda HOM05D016351 ORTHO05D012563 1.4e-06 58.2 40 57.5
ATR0925G003 Amborella trichopoda HOM05D000071 ORTHO05D012563 1.4e-06 58.2 40 57.5
BcaC07g42004 Brassica carinata HOM05D000311 ORTHO05D000183 1.4e-06 58.2 45 53.3
VMungo0720G1122 Vigna mungo HOM05D000311 ORTHO05D000183 1.4e-06 58.2 90 42.2
C08p50610 Brassica napus HOM05D000311 ORTHO05D000183 1.8e-06 57.8 68 42.6
BolC8t52589H Brassica oleracea HOM05D000311 ORTHO05D000183 1.8e-06 57.8 68 42.6
Haze_20328 Corylus avellana HOM05D000311 ORTHO05D000183 1.8e-06 57.8 219 26.0
MELO3C023441.2 Cucumis melo HOM05D000311 ORTHO05D000183 1.8e-06 57.8 44 56.8
Duzib212G0440 Durio zibethinus HOM05D000311 ORTHO05D000183 1.8e-06 57.8 44 61.4
Duzib212G0835 Durio zibethinus HOM05D000311 ORTHO05D000183 1.8e-06 57.8 44 61.4
Duzib212G0990 Durio zibethinus HOM05D000311 ORTHO05D000183 1.8e-06 57.8 44 61.4
Gohir.A05G389900 Gossypium hirsutum HOM05D000311 ORTHO05D000183 1.8e-06 57.8 66 43.9
Lsat_1_v5_gn_1_31501 Lactuca sativa HOM05D000311 ORTHO05D000183 1.8e-06 57.8 242 27.7
QL04p003897 Quercus lobata HOM05D000311 ORTHO05D000183 1.8e-06 57.8 65 47.7
VMungo0331G1915 Vigna mungo HOM05D000311 ORTHO05D000183 1.8e-06 57.8 59 47.5
BcaC07g42003 Brassica carinata HOM05D000311 ORTHO05D000183 2.3e-06 57.4 70 40.0
BcaC07g42463 Brassica carinata HOM05D000311 ORTHO05D000183 2.3e-06 57.4 51 47.1
Duzib052G0915 Durio zibethinus HOM05D000311 ORTHO05D000183 2.3e-06 57.4 173 47.4
Duzib212G0027 Durio zibethinus HOM05D000311 ORTHO05D000183 2.3e-06 57.4 43 62.8
Gohir.D10G225865 Gossypium hirsutum HOM05D000311 ORTHO05D000183 2.3e-06 57.4 221 27.1
Gorai.005G031800 Gossypium raimondii HOM05D000311 ORTHO05D000183 2.3e-06 57.4 41 63.4
CARHR182190 Cardamine hirsuta HOM05D000311 ORTHO05D000183 3.0e-06 57.0 39 66.7
CiPaw.01G103300 Carya illinoinensis HOM05D000311 ORTHO05D000183 3.0e-06 57.0 67 41.8
COL.COLO4_33048 Corchorus olitorius HOM05D000311 ORTHO05D000183 3.0e-06 57.0 45 57.8
Duzib168G2401 Durio zibethinus HOM05D000311 ORTHO05D000183 3.0e-06 57.0 51 51.0
Oeu010079.1 Olea europaea HOM05D000311 ORTHO05D000183 3.0e-06 57.0 48 56.2
Ciclev10025042m.g Citrus clementina HOM05D000311 ORTHO05D000183 4.0e-06 56.6 46 54.3
Ciclev10027016m.g Citrus clementina HOM05D000311 ORTHO05D000183 4.0e-06 56.6 49 57.1
Duzib184G0001 Durio zibethinus HOM05D000311 ORTHO05D000183 4.0e-06 56.6 43 60.5
Duzib212G0223 Durio zibethinus HOM05D000311 ORTHO05D000183 4.0e-06 56.6 43 60.5
Duzib212G0464 Durio zibethinus HOM05D000311 ORTHO05D000183 4.0e-06 56.6 43 60.5
Duzib212G1037 Durio zibethinus HOM05D000311 ORTHO05D000183 4.0e-06 56.6 43 60.5
Duzib214G0001 Durio zibethinus HOM05D000311 ORTHO05D000183 4.0e-06 56.6 43 60.5
Gohir.A02G021301 Gossypium hirsutum HOM05D000311 ORTHO05D000183 4.0e-06 56.6 83 42.2
Gohir.D02G026300 Gossypium hirsutum HOM05D000311 ORTHO05D000183 4.0e-06 56.6 41 61.0
Oeu034160.1 Olea europaea HOM05D000311 ORTHO05D000183 4.0e-06 56.6 78 39.7
TAR626G1657 Trochodendron aralioides HOM05D000311 ORTHO05D000183 4.0e-06 56.6 63 47.6
arahy.Tifrunner.gnm1.ann1.7X7550 Arachis hypogaea HOM05D000311 ORTHO05D000183 5.2e-06 56.2 45 57.8
BcaC07g42465 Brassica carinata HOM05D000311 ORTHO05D000183 5.2e-06 56.2 56 44.6
Carub.0001s0670 Capsella rubella HOM05D000311 ORTHO05D000183 5.2e-06 56.2 40 57.5
Duzib212G0987 Durio zibethinus HOM05D000311 ORTHO05D000183 5.2e-06 56.2 43 60.5
HanXRQChr04g0097591 Helianthus annuus HOM05D000311 ORTHO05D000183 5.2e-06 56.2 246 36.6
Nn3g19255 Nelumbo nucifera HOM05D000071 ORTHO05D000183 5.2e-06 56.2 74 41.9
MELO3C023439.2 Cucumis melo HOM05D000311 ORTHO05D000183 6.8e-06 55.8 44 54.5
Duzib019G0001 Durio zibethinus HOM05D000311 ORTHO05D000183 6.8e-06 55.8 44 61.4
Duzib132G0733 Durio zibethinus HOM05D000311 ORTHO05D000183 6.8e-06 55.8 74 40.5
Duzib184G0004 Durio zibethinus HOM05D000311 ORTHO05D000183 6.8e-06 55.8 44 61.4
Duzib214G0002 Durio zibethinus HOM05D000311 ORTHO05D000183 6.8e-06 55.8 44 61.4
Gorai.005G031900 Gossypium raimondii HOM05D000311 ORTHO05D000183 6.8e-06 55.8 46 58.7
MBI18_g12153_MAGBIO Magnolia biondii HOM05D000311 ORTHO05D000183 6.8e-06 55.8 44 59.1
Phvul.008G109100 Phaseolus vulgaris HOM05D000311 ORTHO05D000183 6.8e-06 55.8 42 59.5
Thecc.07G116200 Theobroma cacao HOM05D000053 ORTHO05D000035 6.8e-06 55.8 95 40.0
TAR626G1355 Trochodendron aralioides HOM05D000311 ORTHO05D000183 6.8e-06 55.8 48 52.1
ATR0184G035 Amborella trichopoda HOM05D000311 ORTHO05D000183 8.9e-06 55.5 78 42.3
ATR0598G293 Amborella trichopoda HOM05D017909 ORTHO05D012563 8.9e-06 55.5 167 44.3
CARHR185740 Cardamine hirsuta HOM05D000311 ORTHO05D000183 8.9e-06 55.5 39 64.1
Ciclev10025050m.g Citrus clementina HOM05D000311 ORTHO05D000183 8.9e-06 55.5 82 39.0
Ciclev10025151m.g Citrus clementina HOM05D000311 ORTHO05D000183 8.9e-06 55.5 45 53.3
COL.COLO4_20182 Corchorus olitorius HOM05D000311 ORTHO05D000183 8.9e-06 55.5 46 54.3
CsaV3_7G032220 Cucumis sativus L. HOM05D000311 ORTHO05D000183 8.9e-06 55.5 45 53.3
Duzib212G0289 Durio zibethinus HOM05D000311 ORTHO05D000183 8.9e-06 55.5 43 60.5
Duzib212G0384 Durio zibethinus HOM05D000311 ORTHO05D000183 8.9e-06 55.5 43 60.5
Gohir.D02G025600 Gossypium hirsutum HOM05D000311 ORTHO05D000183 8.9e-06 55.5 46 58.7
Gohir.D02G026000 Gossypium hirsutum HOM05D000311 ORTHO05D000183 8.9e-06 55.5 46 58.7
Gohir.D02G027020 Gossypium hirsutum HOM05D000311 ORTHO05D000183 8.9e-06 55.5 46 58.7
Gohir.D02G027100 Gossypium hirsutum HOM05D000311 ORTHO05D000183 8.9e-06 55.5 46 58.7
Gohir.D02G027500 Gossypium hirsutum HOM05D000311 ORTHO05D000183 8.9e-06 55.5 46 58.7
Gohir.D02G027900 Gossypium hirsutum HOM05D000311 ORTHO05D000183 8.9e-06 55.5 46 58.7
MBI18_g17393_MAGBIO Magnolia biondii HOM05D000311 ORTHO05D000183 8.9e-06 55.5 44 59.1
Manes.04G022650 Manihot esculenta HOM05D000311 ORTHO05D000183 8.9e-06 55.5 45 57.8
Phvul.008G108400 Phaseolus vulgaris HOM05D000311 ORTHO05D000183 8.9e-06 55.5 211 27.5
QL02p090841 Quercus lobata HOM05D000311 ORTHO05D000183 8.9e-06 55.5 58 44.8


User provided reference genes

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