Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g28529 Nelumbo nucifera HOM05D001448 ORTHO05D007592 5.4e-53 210.7 104 100.0
Nn2g14127 Nelumbo nucifera HOM05D001448 ORTHO05D007592 1.3e-33 146.4 111 71.2
GSVIVG01036149001 Vitis vinifera HOM05D001448 ORTHO05D007592 4.2e-29 131.3 111 64.9
Potri.009G143900 Populus trichocarpa HOM05D001448 ORTHO05D007592 1.6e-28 129.4 111 57.7
Dinv29466 Davidia involucrata HOM05D001448 ORTHO05D007592 2.7e-28 128.6 111 60.4
Sabra09G0111600 Salix brachista HOM05D001448 ORTHO05D007592 3.5e-28 128.3 111 57.7
Sabra09G0114300 Salix brachista HOM05D001448 ORTHO05D007592 3.5e-28 128.3 111 57.7
PSO384G2079 Papaver somniferum HOM05D001448 ORTHO05D007592 2.3e-27 125.6 111 58.6
Ca_19400_v3 Cicer arietinum L. HOM05D001448 ORTHO05D007592 5.1e-27 124.4 111 57.7
Atru.chr3.3289 Acer truncatum HOM05D001448 ORTHO05D007592 1.1e-26 123.2 111 55.9
Eucgr.J00484 Eucalyptus grandis HOM05D001448 ORTHO05D007592 1.1e-26 123.2 111 56.8
Oeu002382.1 Olea europaea HOM05D001448 ORTHO05D007592 1.1e-26 123.2 111 55.0
PSO339G5873 Papaver somniferum HOM05D001448 ORTHO05D007592 1.5e-26 122.9 111 57.7
EL10Ac7g15809 Beta vulgaris HOM05D001448 ORTHO05D007592 1.9e-26 122.5 111 55.0
CANSAT54G0007 Cannabis sativa HOM05D001448 ORTHO05D007592 1.9e-26 122.5 110 56.4
TAR623G0709 Trochodendron aralioides HOM05D001448 ORTHO05D007592 3.3e-26 121.7 111 55.0
Aqoxy4G02800 Aquilegia oxysepala HOM05D001448 ORTHO05D007592 4.3e-26 121.3 111 56.8
Lalb_Chr19g0136561 Lupinus albus HOM05D001448 ORTHO05D007592 4.3e-26 121.3 111 56.8
Psat7g189040 Pisum sativum HOM05D001448 ORTHO05D007592 4.3e-26 121.3 111 55.9
Prupe.6G127600 Prunus persica HOM05D001448 ORTHO05D007592 4.3e-26 121.3 111 55.0
PGR119G1891 Punica granatum HOM05D001448 ORTHO05D007592 4.3e-26 121.3 111 56.8
Ciclev10027891m.g Citrus clementina HOM05D001448 ORTHO05D007592 5.7e-26 120.9 111 55.0
Lj3g0013381 Lotus japonicus HOM05D001448 ORTHO05D007592 5.7e-26 120.9 111 55.9
Medtr4g053530 Medicago truncatula HOM05D001448 ORTHO05D007592 5.7e-26 120.9 111 55.9
ECA233G0362 Erigeron canadensis HOM05D001448 ORTHO05D007592 7.4e-26 120.6 111 53.2
FvH4_3g24670 Fragaria vesca HOM05D001448 ORTHO05D007592 1.3e-25 119.8 111 53.2
FAN11G3386 Fragaria x ananassa HOM05D001448 ORTHO05D007592 1.3e-25 119.8 111 53.2
FAN21G2771 Fragaria x ananassa HOM05D001448 ORTHO05D007592 1.3e-25 119.8 111 53.2
FAN25G3414 Fragaria x ananassa HOM05D001448 ORTHO05D007592 1.3e-25 119.8 111 53.2
arahy.Tifrunner.gnm1.ann1.3B7Z7B Arachis hypogaea HOM05D001448 ORTHO05D007592 1.6e-25 119.4 111 55.0
Lj2A980T11 Lonicera japonica HOM05D001448 ORTHO05D007592 2.8e-25 118.6 111 54.1
TPR.G17213 Trifolium pratense HOM05D001448 ORTHO05D007592 3.7e-25 118.2 111 54.1
TAR633G2006 Trochodendron aralioides HOM05D001448 ORTHO05D007592 3.7e-25 118.2 111 54.1
COL.COLO4_19902 Corchorus olitorius HOM05D001448 ORTHO05D007592 4.8e-25 117.9 110 53.6
TWI31G0173 Tripterygium wilfordii HOM05D001448 ORTHO05D007592 4.8e-25 117.9 111 54.1
AUR62009776 Chenopodium quinoa HOM05D001448 ORTHO05D007592 6.2e-25 117.5 111 52.3
AUR62039221 Chenopodium quinoa HOM05D001448 ORTHO05D007592 6.2e-25 117.5 111 52.3
Migut.D02355 Erythranthe guttata HOM05D001448 ORTHO05D007592 6.2e-25 117.5 111 50.5
Rhsim13G0110500 Rhododendron simsii HOM05D001448 ORTHO05D007592 6.2e-25 117.5 110 52.7
Phvul.011G093100 Phaseolus vulgaris HOM05D001448 ORTHO05D007592 8.2e-25 117.1 111 54.1
RcHm_v2.0_Chr5g0044231 Rosa chinensis HOM05D001448 ORTHO05D007592 8.2e-25 117.1 111 50.5
Nitab4.5_0000227g0200 Nicotiana tabacum HOM05D001448 ORTHO05D007592 1.1e-24 116.7 111 50.5
Sc12g0004430 Simmondsia chinensis HOM05D001448 ORTHO05D007592 1.4e-24 116.3 111 53.2
Nitab4.5_0002914g0020 Nicotiana tabacum HOM05D001448 ORTHO05D007592 1.8e-24 115.9 111 50.5
BraA10t43915Z Brassica rapa HOM05D001448 ORTHO05D007592 2.4e-24 115.5 110 51.8
Manes.11G160900 Manihot esculenta HOM05D001448 ORTHO05D007592 2.4e-24 115.5 111 51.4
Glyma.11G184100 Glycine max HOM05D001448 ORTHO05D007592 3.1e-24 115.2 111 53.2
Glyma.12G088300 Glycine max HOM05D001448 ORTHO05D007592 4.1e-24 114.8 111 53.2
MD03G1142500 Malus domestica HOM05D001448 ORTHO05D007592 5.3e-24 114.4 108 52.8
VMungo1127G0024 Vigna mungo HOM05D001448 ORTHO05D007592 5.3e-24 114.4 111 53.2
HanXRQChr13g0397241 Helianthus annuus HOM05D001448 ORTHO05D007592 6.9e-24 114.0 111 49.5
CsaV3_6G015040 Cucumis sativus L. HOM05D001448 ORTHO05D007592 9.0e-24 113.6 111 54.1
Gorai.009G086300 Gossypium raimondii HOM05D001448 ORTHO05D007592 9.0e-24 113.6 105 56.2
Peaxi162Scf00757g00223 Petunia axillaris HOM05D001448 ORTHO05D007592 9.0e-24 113.6 111 50.5
Thecc.09G285700 Theobroma cacao HOM05D001448 ORTHO05D007592 9.0e-24 113.6 109 53.2
Gohir.D05G084400 Gossypium hirsutum HOM05D001448 ORTHO05D007592 1.2e-23 113.2 105 56.2
Carub.0006s2021 Capsella rubella HOM05D001448 ORTHO05D007592 1.5e-23 112.8 110 51.8
BcaC04g19576 Brassica carinata HOM05D001448 ORTHO05D007592 2.0e-23 112.5 110 50.9
A10p18350 Brassica napus HOM05D001448 ORTHO05D007592 2.0e-23 112.5 110 50.9
Gohir.A05G081400 Gossypium hirsutum HOM05D001448 ORTHO05D007592 2.0e-23 112.5 105 55.2
Peaxi162Scf01281g00019 Petunia axillaris HOM05D001448 ORTHO05D007592 2.0e-23 112.5 111 49.5
C09p54120 Brassica napus HOM05D001448 ORTHO05D007592 2.6e-23 112.1 110 50.9
Actinidia24207 Actinidia chinensis HOM05D001448 ORTHO05D007592 3.4e-23 111.7 110 50.9
Thhalv10015477m.g Eutrema salsugineum HOM05D001448 ORTHO05D007592 3.4e-23 111.7 110 50.9
Sp6g22780 Schrenkiella parvula HOM05D001448 ORTHO05D007592 3.4e-23 111.7 110 50.9
Hund20878 Selenicereus undatus HOM05D001448 ORTHO05D007592 3.4e-23 111.7 111 49.5
Sed0012598 Sechium edule HOM05D001448 ORTHO05D007592 4.5e-23 111.3 109 53.2
AL6G33490 Arabidopsis lyrata HOM05D001448 ORTHO05D007592 5.8e-23 110.9 110 50.9
BcaB08g36428 Brassica carinata HOM05D001448 ORTHO05D007592 5.8e-23 110.9 110 50.9
AT5G22470 Arabidopsis thaliana HOM05D001448 ORTHO05D007592 7.6e-23 110.5 110 51.8
BolC9t58283H Brassica oleracea HOM05D001448 ORTHO05D007592 1.3e-22 109.8 110 50.0
CARHR191060 Cardamine hirsuta HOM05D001448 ORTHO05D007592 1.3e-22 109.8 110 50.9
Cpa.g.sc32.96 Carica papaya HOM05D001448 ORTHO05D007592 1.3e-22 109.8 111 47.7
Haze_23395 Corylus avellana HOM05D001448 ORTHO05D007592 1.3e-22 109.8 104 56.7
MELO3C021418.2 Cucumis melo HOM05D001448 ORTHO05D007592 1.3e-22 109.8 111 52.3
ClCG02G022180 Citrullus lanatus HOM05D001448 ORTHO05D007592 1.7e-22 109.4 111 50.5
Solyc01g009470.2 Solanum lycopersicum HOM05D001448 ORTHO05D007592 2.9e-22 108.6 111 46.8
Aa31LG1G13100 Aethionema arabicum HOM05D001448 ORTHO05D007592 5.0e-22 107.8 109 48.6
Lsat_1_v5_gn_6_40440 Lactuca sativa HOM05D001448 ORTHO05D007592 8.4e-22 107.1 112 49.1
Nitab4.5_0017202g0010 Nicotiana tabacum HOM05D001448 ORTHO05D007592 8.4e-22 107.1 111 46.8
Sopen01g005000 Solanum pennellii HOM05D001448 ORTHO05D007592 1.1e-21 106.7 111 45.9
CiPaw.13G137200 Carya illinoinensis HOM05D001448 ORTHO05D007592 1.4e-21 106.3 113 48.7
THA.LOC104799546 Tarenaya hassleriana HOM05D001448 ORTHO05D007592 2.5e-21 105.5 108 49.1
Nitab4.5_0000234g0160 Nicotiana tabacum HOM05D001448 ORTHO05D007592 7.2e-21 104.0 111 45.0
Potri.004G184100 Populus trichocarpa HOM05D001448 ORTHO05D007592 7.2e-21 104.0 90 57.8
CAN.G942.10 Capsicum annuum HOM05D001448 ORTHO05D007592 9.3e-21 103.6 111 46.8
Hma1.2p1_0578F.1_g182380 Hydrangea macrophylla HOM05D001448 ORTHO05D007592 9.3e-21 103.6 111 48.6
PGSC0003DMG400007402 Solanum tuberosum HOM05D001448 ORTHO05D007592 2.7e-20 102.1 111 43.2
Sopen11g026940 Solanum pennellii HOM05D001448 ORTHO05D007592 4.6e-20 101.3 111 42.3
FAN16G1878 Fragaria x ananassa HOM05D001448 ORTHO05D007592 7.9e-20 100.5 112 49.1
Solyc11g067250.3 Solanum lycopersicum HOM05D001448 ORTHO05D007592 1.3e-19 99.8 111 42.3
unitig_747.g21947 Utricularia gibba HOM05D001448 ORTHO05D007592 1.3e-19 99.8 111 42.3
Os02g0530600 Oryza sativa ssp. japonica HOM05D001448 ORTHO05D007592 1.1e-18 96.7 111 47.7
SalBow6G6699 Salvia bowleyana HOM05D001448 ORTHO05D007592 8.2e-17 90.5 110 43.6
Sc21g0007170 Simmondsia chinensis HOM05D001448 ORTHO05D007592 3.1e-16 88.6 93 52.7
SGA_v2.0_scaffold22G09874 Striga asiatica HOM05D001448 ORTHO05D007592 5.3e-16 87.8 111 43.2
Zm00001eb242720 Zea mays HOM05D001448 ORTHO05D007592 9.0e-16 87.0 107 45.8
CDE02G4747 Ceratophyllum demersum HOM05D001448 ORTHO05D007592 1.4e-13 79.7 101 42.6
vmacro03310 Vaccinium macrocarpon HOM05D001448 ORTHO05D007592 1.8e-11 72.8 47 66.0
SMO367G0269 Selaginella moellendorffii HOM05D001448 ORTHO05D007592 2.3e-11 72.4 107 36.4
DCAR_012186 Daucus carota HOM05D001448 ORTHO05D007592 1.5e-10 69.7 46 60.9
Pp3c1_22640 Physcomitrium patens HOM05D001448 ORTHO05D007592 3.3e-10 68.6 108 35.2
ATR0081G030 Amborella trichopoda HOM05D001448 ORTHO05D007592 2.2e-09 65.9 54 50.0
AagrBONN_evm.TU.Sc2ySwM_228.538 Anthoceros agrestis HOM05D001448 ORTHO05D007592 2.2e-09 65.9 108 32.4
CSS0006332 Camellia sinensis var. sinensis HOM05D001448 ORTHO05D007592 8.2e-09 63.9 54 55.6
arahy.Tifrunner.gnm1.ann1.350PIT Arachis hypogaea HOM05D001448 ORTHO05D007592 1.1e-08 63.5 90 41.1
MD11G1163000 Malus domestica HOM05D001448 ORTHO05D007592 2.9e-06 55.5 33 69.7
QL01p012508 Quercus lobata HOM05D001448 ORTHO05D007592 8.5e-06 53.9 34 61.8


User provided reference genes

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