Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g28465 Nelumbo nucifera HOM05D004531 ORTHO05D005484 3.4e-124 448.4 230 100.0
GSVIVG01029836001 Vitis vinifera HOM05D004531 ORTHO05D005484 9.4e-98 360.5 230 77.4
Dinv37065 Davidia involucrata HOM05D004531 ORTHO05D005484 2.6e-95 352.4 230 78.3
PGR042G0151 Punica granatum HOM05D004531 ORTHO05D005484 2.6e-95 352.4 230 77.4
Thecc.05G127100 Theobroma cacao HOM05D004531 ORTHO05D005484 1.3e-94 350.1 230 74.8
CSS0023033 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 2.8e-94 349.0 230 75.7
Hma1.2p1_0341F.1_g130530 Hydrangea macrophylla HOM05D004531 ORTHO05D005484 2.8e-94 349.0 230 76.1
Prupe.8G106900 Prunus persica HOM05D004531 ORTHO05D005484 1.1e-93 347.1 230 75.7
TWI77G0822 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 1.1e-93 347.1 230 74.8
Duzib248G1029 Durio zibethinus HOM05D004531 ORTHO05D005484 4.1e-93 345.1 230 74.8
Eucgr.A02172 Eucalyptus grandis HOM05D004531 ORTHO05D005484 9.1e-93 344.0 230 75.2
Prupe.4G200900 Prunus persica HOM05D004531 ORTHO05D005484 9.1e-93 344.0 230 75.7
Lj7A661T48 Lonicera japonica HOM05D004531 ORTHO05D005484 2.6e-92 342.4 230 75.7
Gorai.011G260100 Gossypium raimondii HOM05D004531 ORTHO05D005484 4.5e-92 341.7 230 74.3
Gohir.D10G227700 Gossypium hirsutum HOM05D004531 ORTHO05D005484 1.3e-91 340.1 230 73.9
MBI13_g30229_MAGBIO Magnolia biondii HOM05D004531 ORTHO05D005484 2.9e-91 339.0 239 72.8
Gohir.A06G180300 Gossypium hirsutum HOM05D004531 ORTHO05D005484 3.8e-91 338.6 230 74.3
Ciclev10012657m.g Citrus clementina HOM05D004531 ORTHO05D005484 6.5e-91 337.8 230 73.9
Manes.11G057800 Manihot esculenta HOM05D004531 ORTHO05D005484 6.5e-91 337.8 230 73.9
Potri.016G024300 Populus trichocarpa HOM05D004531 ORTHO05D005484 2.5e-90 335.9 230 73.5
CANSAT56G3883 Cannabis sativa HOM05D004531 ORTHO05D005484 5.5e-90 334.7 230 73.9
Sc15g0002670 Simmondsia chinensis HOM05D004531 ORTHO05D005484 5.5e-90 334.7 230 73.0
Ciclev10010418m.g Citrus clementina HOM05D004531 ORTHO05D005484 7.2e-90 334.3 230 72.6
CAN.G641.37 Capsicum annuum HOM05D004531 ORTHO05D005484 1.6e-89 333.2 230 71.3
Sabra16G0021800 Salix brachista HOM05D004531 ORTHO05D005484 2.7e-89 332.4 230 73.0
MD11G1228700 Malus domestica HOM05D004531 ORTHO05D005484 3.6e-89 332.0 229 72.9
ClCG11G010890 Citrullus lanatus HOM05D004531 ORTHO05D005484 4.7e-89 331.6 230 73.0
Atru.chr2.471 Acer truncatum HOM05D004531 ORTHO05D005484 6.1e-89 331.3 230 73.0
MELO3C008757.2 Cucumis melo HOM05D004531 ORTHO05D005484 8.0e-89 330.9 230 72.6
HanXRQChr14g0437741 Helianthus annuus HOM05D004531 ORTHO05D005484 1.0e-88 330.5 230 70.0
CiPaw.08G117500 Carya illinoinensis HOM05D004531 ORTHO05D005484 1.4e-88 330.1 230 71.7
Nitab4.5_0000646g0260 Nicotiana tabacum HOM05D004531 ORTHO05D005484 1.8e-88 329.7 230 70.9
RcHm_v2.0_Chr5g0037141 Rosa chinensis HOM05D004531 ORTHO05D005484 1.8e-88 329.7 230 71.7
MD15G1425000 Malus domestica HOM05D004531 ORTHO05D005484 2.3e-88 329.3 230 72.6
Cc06_g18540 Coffea canephora HOM05D004531 ORTHO05D005484 3.9e-88 328.6 230 70.9
CsaV3_2G009570 Cucumis sativus L. HOM05D004531 ORTHO05D005484 6.7e-88 327.8 230 72.2
Solyc10g079430.2 Solanum lycopersicum HOM05D004531 ORTHO05D005484 6.7e-88 327.8 230 70.0
Nitab4.5_0010736g0010 Nicotiana tabacum HOM05D004531 ORTHO05D005484 8.8e-88 327.4 230 70.9
COL.COLO4_07074 Corchorus olitorius HOM05D004531 ORTHO05D005484 1.1e-87 327.0 230 70.9
ECA238G4589 Erigeron canadensis HOM05D004531 ORTHO05D005484 2.6e-87 325.9 230 70.9
Sed0018245 Sechium edule HOM05D004531 ORTHO05D005484 2.6e-87 325.9 230 70.9
PGSC0003DMG400008162 Solanum tuberosum HOM05D004531 ORTHO05D005484 4.4e-87 325.1 230 70.0
Nitab4.5_0000082g0350 Nicotiana tabacum HOM05D004531 ORTHO05D005484 7.4e-87 324.3 230 69.6
TAR374G0360 Trochodendron aralioides HOM05D004531 ORTHO05D005484 4.8e-86 321.6 230 71.7
FvH4_3g21660 Fragaria vesca HOM05D004531 ORTHO05D005484 1.1e-85 320.5 230 68.7
Glyma.08G077300 Glycine max HOM05D004531 ORTHO05D005484 1.1e-85 320.5 231 70.1
MD11G1228500 Malus domestica HOM05D004531 ORTHO05D005484 1.4e-85 320.1 250 66.8
Os01g0810000 Oryza sativa ssp. japonica HOM05D004531 ORTHO05D005484 1.4e-85 320.1 230 69.1
SalBow6G4182 Salvia bowleyana HOM05D004531 ORTHO05D005484 5.3e-85 318.2 230 68.7
vmacro07599 Vaccinium macrocarpon HOM05D004531 ORTHO05D005484 5.3e-85 318.2 230 68.3
EL10Ac1g01672 Beta vulgaris HOM05D004531 ORTHO05D005484 9.1e-85 317.4 230 70.9
VMungo0251G1523 Vigna mungo HOM05D004531 ORTHO05D005484 1.2e-84 317.0 230 68.7
DCAR_020613 Daucus carota HOM05D004531 ORTHO05D005484 1.6e-84 316.6 230 69.1
EL10Ac9g22646 Beta vulgaris HOM05D004531 ORTHO05D005484 2.0e-84 316.2 230 70.9
Migut.J01686 Erythranthe guttata HOM05D004531 ORTHO05D005484 2.0e-84 316.2 232 68.1
Lalb_Chr13g0291551 Lupinus albus HOM05D004531 ORTHO05D005484 2.0e-84 316.2 230 68.7
Glyma.05G122300 Glycine max HOM05D004531 ORTHO05D005484 2.6e-84 315.8 231 70.6
MSTRG.6389 Avicennia marina HOM05D004531 ORTHO05D005484 5.9e-84 314.7 230 69.1
Phvul.002G203400 Phaseolus vulgaris HOM05D004531 ORTHO05D005484 5.9e-84 314.7 230 69.1
RhsimUnG0021500 Rhododendron simsii HOM05D004531 ORTHO05D005484 1.3e-83 313.5 254 64.6
Medtr4g094380 Medicago truncatula HOM05D004531 ORTHO05D005484 1.7e-83 313.2 231 69.3
Sabra16G0030200 Salix brachista HOM05D004531 ORTHO05D005484 5.0e-83 311.6 220 71.4
AUR62034356 Chenopodium quinoa HOM05D004531 ORTHO05D005484 1.1e-82 310.5 230 69.1
Aqoxy2G03324 Aquilegia oxysepala HOM05D004531 ORTHO05D005484 1.5e-82 310.1 230 67.8
FAN11G1137 Fragaria x ananassa HOM05D004531 ORTHO05D005484 7.2e-82 307.8 252 62.7
SGA_v2.0_scaffold69G23138 Striga asiatica HOM05D004531 ORTHO05D005484 7.2e-82 307.8 232 66.8
arahy.Tifrunner.gnm1.ann1.8UG22X Arachis hypogaea HOM05D004531 ORTHO05D005484 9.4e-82 307.4 232 66.8
HPP92_027481 Vanilla planifolia HOM05D004531 ORTHO05D005484 1.6e-81 306.6 230 68.7
arahy.Tifrunner.gnm1.ann1.35U2WI Arachis hypogaea HOM05D004531 ORTHO05D005484 2.1e-81 306.2 232 66.4
Lj6g0006960 Lotus japonicus HOM05D004531 ORTHO05D005484 2.1e-81 306.2 231 68.4
Cpa.g.sc115.24 Carica papaya HOM05D004531 ORTHO05D005484 3.6e-81 305.4 230 68.3
AUR62022353 Chenopodium quinoa HOM05D004531 ORTHO05D005484 4.7e-81 305.1 230 68.3
Ca_18320_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 6.1e-81 304.7 230 66.1
Lsat_1_v5_gn_2_52561 Lactuca sativa HOM05D004531 ORTHO05D005484 1.2e-79 300.4 220 66.8
TPR.G23804 Trifolium pratense HOM05D004531 ORTHO05D005484 1.5e-79 300.1 231 67.1
THA.LOC104820245 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 2.6e-79 299.3 232 66.8
unitig_746.g26802 Utricularia gibba HOM05D004531 ORTHO05D005484 2.6e-79 299.3 230 64.8
Psat7g095600 Pisum sativum HOM05D004531 ORTHO05D005484 3.3e-79 298.9 230 67.0
Peaxi162Scf00002g10416 Petunia axillaris HOM05D004531 ORTHO05D005484 1.3e-78 297.0 263 58.6
arahy.Tifrunner.gnm1.ann1.JM9XLQ Arachis hypogaea HOM05D004531 ORTHO05D005484 2.8e-78 295.8 232 65.5
PSO210G4508 Papaver somniferum HOM05D004531 ORTHO05D005484 2.8e-78 295.8 230 65.2
Gohir.A08G129500 Gossypium hirsutum HOM05D004531 ORTHO05D005484 6.3e-78 294.7 230 66.5
BcaC02g10151 Brassica carinata HOM05D004531 ORTHO05D005484 2.4e-77 292.7 230 62.6
BcaB02g08172 Brassica carinata HOM05D004531 ORTHO05D005484 3.1e-77 292.4 230 61.7
A04p01660 Brassica napus HOM05D004531 ORTHO05D005484 7.0e-77 291.2 230 62.6
BraA09t40693Z Brassica rapa HOM05D004531 ORTHO05D005484 7.0e-77 291.2 230 62.6
C04p32210 Brassica napus HOM05D004531 ORTHO05D005484 9.1e-77 290.8 230 62.2
Aa31LG3G11700 Aethionema arabicum HOM05D004531 ORTHO05D005484 1.6e-76 290.0 231 65.8
A09p52640 Brassica napus HOM05D004531 ORTHO05D005484 1.6e-76 290.0 230 62.6
PSO210G2223 Papaver somniferum HOM05D004531 ORTHO05D005484 1.6e-76 290.0 230 63.9
BolC8t51130H Brassica oleracea HOM05D004531 ORTHO05D005484 2.0e-76 289.7 230 62.2
C08p35370 Brassica napus HOM05D004531 ORTHO05D005484 5.9e-76 288.1 230 61.7
Haze_23723 Corylus avellana HOM05D004531 ORTHO05D005484 7.7e-76 287.7 307 54.1
AL5G42600 Arabidopsis lyrata HOM05D004531 ORTHO05D005484 1.7e-75 286.6 230 63.5
BcaC07g42771 Brassica carinata HOM05D004531 ORTHO05D005484 1.7e-75 286.6 230 60.9
MELO3C023654.2 Cucumis melo HOM05D004531 ORTHO05D005484 1.7e-75 286.6 236 62.7
Sp5g02860 Schrenkiella parvula HOM05D004531 ORTHO05D005484 5.0e-75 285.0 230 61.7
SpUn0080_0040 Schrenkiella parvula HOM05D004531 ORTHO05D005484 5.0e-75 285.0 230 61.7
Carub.0005s2711 Capsella rubella HOM05D004531 ORTHO05D005484 1.5e-74 283.5 230 62.2
CARHR170680 Cardamine hirsuta HOM05D004531 ORTHO05D005484 3.2e-74 282.3 230 61.3
Thhalv10006222m.g Eutrema salsugineum HOM05D004531 ORTHO05D005484 4.2e-74 282.0 230 61.3
AT3G60360 Arabidopsis thaliana HOM05D004531 ORTHO05D005484 5.5e-74 281.6 230 61.7
ClCG09G010350 Citrullus lanatus HOM05D004531 ORTHO05D005484 1.6e-73 280.0 220 63.6
Zm00001eb369240 Zea mays HOM05D004531 ORTHO05D005484 2.1e-73 279.6 213 65.3
RhsimUnG0117400 Rhododendron simsii HOM05D004531 ORTHO05D005484 4.0e-72 275.4 318 50.6
QL09p051267 Quercus lobata HOM05D004531 ORTHO05D005484 7.5e-71 271.2 361 46.3
TAR636G0629 Trochodendron aralioides HOM05D004531 ORTHO05D005484 7.5e-71 271.2 182 76.4
SGA_v2.0_scaffold105G30334 Striga asiatica HOM05D004531 ORTHO05D005484 8.3e-70 267.7 199 65.8
CsaV3_7G024290 Cucumis sativus L. HOM05D004531 ORTHO05D005484 2.0e-68 263.1 230 60.0
CDE07G2032 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 7.5e-63 244.6 180 70.0
SMO367G0994 Selaginella moellendorffii HOM05D004531 ORTHO05D005484 2.2e-62 243.0 230 52.6
Duzib052G0496 Durio zibethinus HOM05D004531 ORTHO05D005484 3.7e-62 242.3 166 71.1
AagrBONN_evm.TU.Sc2ySwM_228.1021 Anthoceros agrestis HOM05D004531 ORTHO05D005484 7.3e-58 228.0 234 53.4
Mapoly0074s0052 Marchantia polymorpha HOM05D004531 ORTHO05D005484 1.8e-56 223.4 231 52.4
Sopen10g030070 Solanum pennellii HOM05D004531 ORTHO05D005484 2.3e-56 223.0 164 65.2
Cfa002196 Carpinus fangiana HOM05D004531 ORTHO05D005484 1.2e-55 220.7 140 77.9
Nitab4.5_0002805g0150 Nicotiana tabacum HOM05D004531 ORTHO05D005484 1.2e-55 220.7 164 64.6
Hund15691 Selenicereus undatus HOM05D004531 ORTHO05D005484 1.2e-55 220.7 141 78.0
Hund22289 Selenicereus undatus HOM05D004531 ORTHO05D005484 1.4e-53 213.8 283 47.3
Ah.13g077510 Amaranthus hybridus HOM05D004531 ORTHO05D005484 3.5e-52 209.1 229 55.0
FAN16G0044 Fragaria x ananassa HOM05D004531 ORTHO05D005484 2.3e-51 206.5 164 62.8
Pp3c3_27620 Physcomitrium patens HOM05D004531 ORTHO05D005484 6.6e-51 204.9 234 47.4
FAN21G3808 Fragaria x ananassa HOM05D004531 ORTHO05D005484 2.1e-49 199.9 149 65.1
ATR1096G053 Amborella trichopoda HOM05D004531 ORTHO05D005484 3.4e-47 192.6 138 68.1
Dinv14546 Davidia involucrata HOM05D004531 ORTHO05D005484 4.4e-47 192.2 117 81.2
CBR_g26482 Chara braunii HOM05D004531 ORTHO05D005484 3.2e-45 186.0 245 44.5
MCO16G699 Micromonas commoda HOM05D004531 ORTHO05D005484 1.7e-43 180.3 243 45.3
Oeu020249.1 Olea europaea HOM05D004531 ORTHO05D005484 3.6e-41 172.6 111 78.4
CDE07G0548 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 4.7e-41 172.2 139 61.9
Carub.0007s2695 Capsella rubella HOM05D004531 ORTHO05D005484 5.2e-40 168.7 176 51.1
BraA04t15890Z Brassica rapa HOM05D004531 ORTHO05D005484 9.9e-39 164.5 139 58.3
PRCOL_00003072 Prasinoderma coloniale HOM05D004531 ORTHO05D005484 2.4e-37 159.8 266 40.2
Ca_08745_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 5.4e-37 158.7 216 44.9
Pp3s222_10 Physcomitrium patens HOM05D004531 ORTHO05D005484 1.2e-36 157.5 152 53.3
Cre13.g573050 Chlamydomonas reinhardtii HOM05D004531 ORTHO05D005484 2.3e-35 153.3 292 38.0
FAN25G0149 Fragaria x ananassa HOM05D004531 ORTHO05D005484 3.3e-34 149.4 118 61.0
Potri.006G026002 Populus trichocarpa HOM05D004531 ORTHO05D005484 6.4e-30 135.2 92 72.8
MD11G1228400 Malus domestica HOM05D004531 ORTHO05D005484 6.2e-25 118.6 122 54.1
CSS0027948 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 5.3e-24 115.5 97 61.9
Psat3g051800 Pisum sativum HOM05D004531 ORTHO05D005484 6.9e-24 115.2 122 54.1
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 4.6e-20 102.4 70 67.1
CDE07G1261 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 2.3e-19 100.1 66 74.2
Zm00001eb262530 Zea mays HOM05D000031 ORTHO05D445172 3.0e-19 99.8 71 59.2
Cfa023089 Carpinus fangiana HOM05D004531 ORTHO05D005484 3.3e-18 96.3 132 44.7
TWI38G0613 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 5.6e-18 95.5 124 44.4
Zm00001eb180730 Zea mays HOM05D004531 ORTHO05D005484 4.0e-16 89.4 63 63.5
ATR1096G046 Amborella trichopoda HOM05D004531 ORTHO05D005484 6.9e-16 88.6 65 66.2
Gohir.A06G180400 Gossypium hirsutum HOM05D004531 ORTHO05D005484 6.9e-16 88.6 54 83.3
PSO210G0815 Papaver somniferum HOM05D004531 ORTHO05D005484 1.5e-15 87.4 94 51.1
ECA238G1549 Erigeron canadensis HOM05D004531 ORTHO05D005484 1.9e-13 80.5 58 62.1
Haze_26248 Corylus avellana HOM05D004531 ORTHO05D005484 2.4e-13 80.1 129 37.2
SalBow8G3341 Salvia bowleyana HOM05D004531 ORTHO05D005484 4.2e-13 79.3 85 48.2
Oeu059360.1 Olea europaea HOM05D004531 ORTHO05D005484 4.8e-09 65.9 89 41.6
MD03G1213700 Malus domestica HOM05D004531 ORTHO05D005484 1.4e-08 64.3 48 64.6
Oeu059364.1 Olea europaea HOM05D004531 ORTHO05D290784 1.8e-08 63.9 61 49.2
TAR633G0556 Trochodendron aralioides HOM05D004531 ORTHO05D005484 1.2e-07 61.2 37 73.0
Oeu059357.1 Olea europaea HOM05D004531 ORTHO05D005484 1.5e-07 60.8 41 68.3
PSO210G7246 Papaver somniferum HOM05D000014 ORTHO05D000016 1.7e-06 57.4 40 67.5


User provided reference genes

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