Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 4.9e-263 910.6 463 100.0
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 1.7e-183 646.4 476 70.4
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 1.8e-177 626.3 507 65.9
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.3e-159 566.2 460 65.0
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.0e-159 565.8 460 65.0
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 2.8e-157 559.3 504 59.5
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 2.9e-154 549.3 472 61.9
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 8.3e-154 547.7 470 61.3
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 3.2e-153 545.8 484 60.3
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 7.1e-153 544.7 496 59.1
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 2.1e-152 543.1 495 59.0
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.1e-152 543.1 507 57.4
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 2.7e-152 542.7 514 57.0
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 6.0e-152 541.6 477 59.5
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 7.8e-152 541.2 484 61.2
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 1.3e-151 540.4 501 58.1
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 2.3e-151 539.7 494 58.9
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 3.3e-150 535.8 523 57.0
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 1.2e-149 533.9 521 55.7
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 1.6e-149 533.5 475 59.8
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 3.6e-149 532.3 489 59.1
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 1.1e-148 530.8 459 61.4
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 1.4e-148 530.4 472 59.1
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 3.1e-148 529.3 506 57.9
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 3.1e-148 529.3 484 57.0
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 8.9e-148 527.7 465 60.2
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 1.5e-147 526.9 455 61.5
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 2.6e-147 526.2 484 57.0
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 3.4e-147 525.8 465 58.9
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 3.4e-147 525.8 516 56.6
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 4.4e-147 525.4 483 58.2
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 5.8e-147 525.0 460 60.2
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 7.6e-147 524.6 521 55.1
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 9.9e-147 524.2 475 58.7
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 9.9e-147 524.2 500 57.2
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 9.9e-147 524.2 470 57.9
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 1.3e-146 523.9 484 57.0
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 1.3e-146 523.9 460 59.3
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 1.7e-146 523.5 509 57.0
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 2.9e-146 522.7 470 59.1
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 3.7e-146 522.3 452 58.6
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 1.1e-145 520.8 482 57.7
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 1.4e-145 520.4 501 56.1
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 1.9e-145 520.0 457 60.4
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 2.4e-145 519.6 512 55.3
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 7.1e-145 518.1 509 56.2
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 1.2e-144 517.3 507 55.8
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 2.1e-144 516.5 475 57.7
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 2.7e-144 516.2 460 58.9
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 6.0e-144 515.0 489 58.1
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 7.8e-144 514.6 474 58.2
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 7.8e-144 514.6 478 56.3
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 1.0e-143 514.2 509 56.0
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 1.3e-143 513.8 473 57.7
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 1.3e-143 513.8 444 59.9
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 2.3e-143 513.1 480 56.7
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 8.6e-143 511.1 473 57.5
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 8.6e-143 511.1 451 58.5
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 8.6e-143 511.1 452 60.2
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 1.5e-142 510.4 476 56.7
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.5e-142 510.4 476 56.7
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 2.5e-142 509.6 475 58.9
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 4.3e-142 508.8 476 56.5
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 5.6e-142 508.4 476 56.3
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 7.3e-142 508.1 494 55.7
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 9.6e-142 507.7 465 59.4
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 1.4e-140 503.8 500 55.0
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 1.8e-140 503.4 488 54.9
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 1.5e-139 500.4 472 57.0
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 2.6e-139 499.6 469 56.3
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 7.6e-139 498.0 490 53.5
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 6.4e-138 495.0 493 53.3
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 1.1e-137 494.2 495 53.5
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 1.1e-137 494.2 478 55.6
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 1.1e-137 494.2 478 55.6
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 1.9e-137 493.4 459 56.6
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 1.9e-137 493.4 453 57.8
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 2.4e-137 493.0 472 55.3
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 5.4e-137 491.9 495 53.9
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 7.1e-137 491.5 488 53.7
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 4.6e-136 488.8 482 54.1
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 6.0e-136 488.4 504 54.2
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 1.0e-135 487.6 497 53.3
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 1.0e-135 487.6 497 53.3
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.7e-135 486.9 414 61.4
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 5.1e-135 485.3 453 57.2
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 1.5e-134 483.8 463 54.9
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 2.8e-133 479.6 453 57.0
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 2.9e-130 469.5 567 49.6
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 6.6e-127 458.4 455 53.0
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 1.8e-124 450.3 549 49.5
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 1.5e-123 447.2 420 55.0
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 4.5e-123 445.7 487 50.7
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 4.9e-122 442.2 420 54.5
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 1.4e-116 424.1 488 49.2
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 1.9e-113 413.7 399 56.1
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.6e-112 410.6 398 55.8
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 5.3e-108 395.6 412 52.4
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 2.0e-107 393.7 498 45.8
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 5.0e-106 389.0 453 50.3
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 1.4e-105 387.5 487 44.1
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 3.0e-103 379.8 272 69.5
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 7.4e-102 375.2 495 46.7
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 4.8e-101 372.5 231 77.1
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 7.7e-99 365.2 462 43.7
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 5.1e-95 352.4 327 58.1
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 4.5e-91 339.3 243 66.7
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 4.5e-91 339.3 243 66.7
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 1.6e-88 330.9 254 66.1
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 2.7e-88 330.1 204 77.0
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 5.2e-87 325.9 199 77.9
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 6.1e-72 275.8 196 67.9
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 8.5e-66 255.4 178 71.3
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 1.1e-65 255.0 287 45.6
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 9.5e-65 251.9 175 68.0
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 1.0e-63 248.4 325 44.6
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 1.2e-59 235.0 319 42.0
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 2.7e-51 207.2 168 62.5
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 3.0e-50 203.8 167 62.3
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 6.6e-50 202.6 293 43.7
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.3e-49 199.9 156 67.9
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.4e-47 194.9 171 59.6
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 4.9e-45 186.4 251 45.4
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 3.6e-40 170.2 146 58.9
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.4e-36 158.3 143 56.6
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 4.6e-35 153.3 256 39.1
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 1.7e-34 151.4 502 24.7
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.8e-31 141.4 163 48.5
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 4.4e-30 136.7 107 58.9
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 5.8e-30 136.3 210 43.8
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.3e-29 135.2 149 52.3
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 1.0e-26 125.6 98 62.2
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 3.9e-26 123.6 143 48.3
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.5e-22 111.7 100 53.0
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 6.0e-19 99.8 55 83.6
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 1.3e-13 82.0 298 28.9
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 3.8e-13 80.5 165 37.0
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 1.9e-12 78.2 150 37.3
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 2.1e-11 74.7 53 60.4
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 6.0e-11 73.2 78 50.0
Cfa022134 Carpinus fangiana HOM05D005286 ORTHO05D006348 1.8e-10 71.6 260 29.2
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 1.5e-09 68.6 53 67.9
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.6e-08 65.1 66 51.5


User provided reference genes

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