Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.8e-122 442.6 220 100.0
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.2e-81 307.0 204 78.9
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 5.1e-77 291.6 199 76.4
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 3.0e-69 265.8 198 71.2
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 6.7e-69 264.6 203 67.0
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 1.9e-68 263.1 207 67.6
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 7.4e-68 261.2 205 66.3
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 4.2e-63 245.4 184 71.7
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 7.2e-63 244.6 224 61.6
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 1.6e-62 243.4 208 63.9
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 1.0e-61 240.7 206 63.6
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 3.3e-60 235.7 214 59.8
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 3.3e-60 235.7 224 58.5
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 7.4e-60 234.6 237 59.1
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 6.3e-59 231.5 215 60.0
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 1.1e-58 230.7 214 59.8
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 3.1e-58 229.2 213 60.1
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 3.1e-58 229.2 212 60.4
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 1.2e-57 227.3 210 60.0
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 2.0e-57 226.5 213 59.6
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 1.0e-56 224.2 216 56.9
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 1.3e-56 223.8 218 59.2
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 1.3e-56 223.8 185 66.5
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 1.7e-56 223.4 203 60.1
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 2.9e-56 222.6 211 59.7
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.8e-56 222.2 209 61.7
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 3.8e-56 222.2 209 61.7
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 3.8e-56 222.2 204 60.3
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 6.5e-56 221.5 203 57.6
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.1e-55 220.7 204 60.3
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.9e-55 219.9 204 60.3
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 2.5e-55 219.5 209 56.9
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 2.5e-55 219.5 204 59.3
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 2.5e-55 219.5 231 54.1
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 7.2e-55 218.0 204 59.8
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 2.7e-54 216.1 205 60.0
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.7e-54 216.1 209 59.8
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 2.7e-54 216.1 222 56.3
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.4e-53 213.8 214 54.2
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 1.8e-53 213.4 213 54.9
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 6.7e-53 211.5 209 55.5
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.1e-52 210.7 214 54.2
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 2.6e-52 209.5 203 57.1
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.4e-52 208.8 214 52.8
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 5.7e-52 208.4 203 57.1
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 5.7e-52 208.4 209 58.4
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 7.4e-52 208.0 179 60.9
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 1.7e-51 206.8 205 56.1
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 6.3e-51 204.9 230 54.8
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.1e-50 204.1 200 53.5
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 1.6e-49 200.3 146 72.6
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 2.6e-49 199.5 202 55.4
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 3.8e-48 195.7 188 54.8
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 5.0e-48 195.3 211 55.9
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 5.0e-48 195.3 208 54.3
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 6.5e-48 194.9 186 54.3
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 1.1e-47 194.1 204 52.9
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 2.5e-47 193.0 202 55.0
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.5e-47 193.0 213 53.5
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 3.2e-47 192.6 204 52.5
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 4.2e-47 192.2 209 54.1
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 4.2e-47 192.2 217 51.6
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 7.2e-47 191.4 206 53.9
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 9.4e-47 191.0 209 54.1
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 3.6e-46 189.1 198 52.0
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 8.0e-46 188.0 199 52.3
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 8.0e-46 188.0 205 54.6
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.8e-45 186.8 210 51.4
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 1.8e-45 186.8 219 53.0
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 3.0e-45 186.0 206 52.4
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.2e-44 184.1 181 54.7
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 3.3e-44 182.6 210 50.5
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 3.3e-44 182.6 199 51.3
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 5.7e-44 181.8 214 53.7
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 7.5e-44 181.4 228 47.8
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 9.7e-44 181.0 211 52.6
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.3e-43 180.6 201 50.7
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 1.3e-43 180.6 247 47.4
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 1.3e-43 180.6 221 49.8
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 2.2e-43 179.9 226 47.8
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 2.2e-43 179.9 210 51.4
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 2.8e-43 179.5 203 49.8
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 2.8e-43 179.5 204 53.9
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 3.7e-43 179.1 188 52.1
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 4.1e-42 175.6 204 51.0
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 4.1e-42 175.6 204 51.0
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 4.1e-42 175.6 204 51.0
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 5.3e-42 175.3 217 46.5
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 9.1e-42 174.5 199 48.2
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 9.1e-42 174.5 199 48.2
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.2e-41 174.1 202 49.5
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 1.2e-41 174.1 201 50.7
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 1.6e-41 173.7 199 48.2
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 1.6e-41 173.7 199 48.2
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 2.0e-41 173.3 214 50.9
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 2.7e-41 172.9 209 46.9
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 3.5e-41 172.6 194 53.1
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 5.9e-41 171.8 220 49.1
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 5.9e-41 171.8 220 49.1
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 5.9e-41 171.8 208 51.0
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 7.7e-41 171.4 204 49.5
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 7.7e-41 171.4 204 49.5
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 7.7e-41 171.4 223 49.8
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 1.3e-40 170.6 206 48.5
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 2.9e-40 169.5 203 49.8
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 2.9e-40 169.5 193 51.8
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 6.5e-40 168.3 196 47.4
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 8.5e-40 167.9 237 48.1
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 2.5e-39 166.4 211 47.9
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 4.2e-39 165.6 225 45.3
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 9.4e-39 164.5 193 53.9
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 1.2e-38 164.1 224 44.6
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 1.2e-38 164.1 202 47.0
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 1.2e-38 164.1 202 47.0
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 1.2e-38 164.1 202 47.0
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 2.1e-38 163.3 202 47.5
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 2.7e-38 162.9 202 47.0
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 3.6e-38 162.5 202 46.5
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 4.7e-38 162.2 200 47.5
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 6.1e-38 161.8 211 45.0
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 8.0e-38 161.4 204 49.5
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 1.4e-37 160.6 215 49.3
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 4.0e-37 159.1 232 47.0
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 2.6e-36 156.4 252 43.3
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 7.5e-36 154.8 200 46.0
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 1.3e-35 154.1 200 50.5
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 2.2e-35 153.3 259 42.9
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 1.4e-34 150.6 192 45.8
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 2.4e-34 149.8 177 49.2
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 2.4e-34 149.8 169 49.7
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 1.6e-33 147.1 202 44.1
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 3.5e-33 146.0 182 46.2
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 5.5e-31 138.7 183 47.0
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 3.6e-30 136.0 177 46.9
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 3.0e-29 132.9 160 53.1
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.0e-29 132.5 176 45.5
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 5.2e-29 132.1 199 41.2
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 7.5e-28 128.3 226 44.2
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 4.9e-27 125.6 183 43.2
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 3.1e-26 122.9 200 40.5
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 1.6e-25 120.6 115 56.5
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.5e-25 119.4 169 43.2
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 7.8e-25 118.2 199 39.7
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 3.8e-24 115.9 180 46.1
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.9e-23 113.6 207 37.2
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 9.5e-23 111.3 195 40.0
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 6.1e-22 108.6 161 42.9
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 3.0e-21 106.3 217 36.4
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 5.2e-21 105.5 105 52.4
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 2.0e-20 103.6 201 37.3
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 5.7e-20 102.1 200 36.0
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 2.2e-19 100.1 99 56.6
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 2.2e-19 100.1 98 57.1
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 4.9e-19 99.0 197 37.6
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 5.4e-18 95.5 126 50.8
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 5.4e-18 95.5 184 34.8
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 4.6e-17 92.4 183 35.5
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 5.9e-17 92.0 166 38.0
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.3e-16 90.1 120 47.5
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 3.9e-16 89.4 250 31.2
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 5.0e-16 89.0 83 57.8
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 1.9e-15 87.0 167 35.3
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 1.9e-15 87.0 167 35.3
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 2.5e-15 86.7 167 35.3
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 2.5e-15 86.7 167 35.3
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 3.3e-15 86.3 167 34.7
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 2.1e-14 83.6 161 37.3
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 4.0e-13 79.3 94 47.9
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 7.5e-12 75.1 159 31.4
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 3.2e-10 69.7 95 44.2
Zm00001eb076410 Zea mays HOM05D004006 ORTHO05D004585 2.0e-09 67.0 99 39.4
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 2.7e-09 66.6 172 32.0
Nn5g27936 Nelumbo nucifera HOM05D004006 ORTHO05D004585 2.5e-07 60.1 113 35.4


User provided reference genes

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