Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g28237 Nelumbo nucifera HOM05D003347 ORTHO05D003821 5.6e-73 278.5 275 100.0
TAR381G0729 Trochodendron aralioides HOM05D003347 ORTHO05D003821 6.2e-48 195.3 274 75.9
TAR376G0009 Trochodendron aralioides HOM05D003347 ORTHO05D003821 4.3e-41 172.6 274 60.6
ATR0684G168 Amborella trichopoda HOM05D003347 ORTHO05D003821 4.1e-39 166.0 274 73.7
TAR628G0882 Trochodendron aralioides HOM05D003347 ORTHO05D003821 5.3e-39 165.6 274 73.4
PSO063G2612 Papaver somniferum HOM05D003347 ORTHO05D003821 2.0e-38 163.7 272 66.9
TWI14G1287 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.9e-36 157.1 275 67.3
CDE06G2684 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 2.1e-35 153.7 274 70.4
Nn1g08766 Nelumbo nucifera HOM05D003347 ORTHO05D003821 3.5e-35 152.9 276 76.1
Hund07201 Selenicereus undatus HOM05D003347 ORTHO05D003821 1.8e-34 150.6 270 58.9
Gohir.A04G127400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 3.0e-34 149.8 275 67.6
CSS0039803 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 5.1e-34 149.1 193 64.8
CDE08G0312 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 2.5e-33 146.7 288 61.1
Lj6g0014149 Lotus japonicus HOM05D003347 ORTHO05D003821 6.3e-32 142.1 277 62.1
HPP92_009365 Vanilla planifolia HOM05D003347 ORTHO05D003821 1.4e-31 141.0 201 61.2
PGR042G0677 Punica granatum HOM05D003347 ORTHO05D003821 1.8e-31 140.6 270 74.8
Atru.chr6.636 Acer truncatum HOM05D003347 ORTHO05D003821 2.4e-31 140.2 200 73.5
arahy.Tifrunner.gnm1.ann1.N22SFW Arachis hypogaea HOM05D003347 ORTHO05D003821 9.0e-31 138.3 270 70.4
CDE06G2842 Ceratophyllum demersum HOM05D003347 ORTHO05D003821 2.6e-30 136.7 274 73.4
Aqoxy6G00189 Aquilegia oxysepala HOM05D003347 ORTHO05D003821 4.5e-30 136.0 274 73.0
Gorai.008G042400 Gossypium raimondii HOM05D003347 ORTHO05D003821 4.5e-30 136.0 275 63.6
TWI31G0129 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 3.8e-29 132.9 205 57.1
MBI03_g33029_MAGBIO Magnolia biondii HOM05D003347 ORTHO05D003821 5.0e-29 132.5 274 60.9
Sed0005094 Sechium edule HOM05D003347 ORTHO05D003821 1.1e-28 131.3 269 68.8
PGR102G0439 Punica granatum HOM05D003347 ORTHO05D003821 1.4e-28 131.0 274 67.9
MELO3C014381.2 Cucumis melo HOM05D003347 ORTHO05D003821 2.5e-28 130.2 269 67.3
Hma1.2p1_0217F.1_g092040 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 3.2e-28 129.8 277 66.1
CSS0043936 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 4.2e-28 129.4 193 68.9
Gohir.D12G040600 Gossypium hirsutum HOM05D003347 ORTHO05D003821 4.2e-28 129.4 231 75.3
Haze_01671 Corylus avellana HOM05D003347 ORTHO05D003821 5.5e-28 129.0 229 72.1
Thecc.02G038200 Theobroma cacao HOM05D003347 ORTHO05D003821 5.5e-28 129.0 275 64.4
CsaV3_6G037360 Cucumis sativus L. HOM05D003347 ORTHO05D003821 1.2e-27 127.9 269 66.5
Gohir.D04G172100 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.2e-27 127.9 275 64.4
Duzib132G0710 Durio zibethinus HOM05D003347 ORTHO05D003821 1.6e-27 127.5 275 68.0
GSVIVG01022926001 Vitis vinifera HOM05D003347 ORTHO05D003821 3.6e-27 126.3 275 68.0
CSS0030084 Camellia sinensis var. sinensis HOM05D003347 ORTHO05D003821 1.4e-26 124.4 188 61.7
Dinv34344 Davidia involucrata HOM05D003347 ORTHO05D003821 1.4e-26 124.4 274 58.0
Cfa005522 Carpinus fangiana HOM05D003347 ORTHO05D003821 8.8e-26 121.7 229 73.4
AUR62014268 Chenopodium quinoa HOM05D003347 ORTHO05D003821 8.8e-26 121.7 199 72.4
Gohir.A12G031700 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.1e-25 121.3 275 65.8
Gorai.012G161200 Gossypium raimondii HOM05D003347 ORTHO05D003821 4.3e-25 119.4 296 59.1
Lalb_Chr18g0060901 Lupinus albus HOM05D003347 ORTHO05D003821 7.4e-25 118.6 268 66.4
Dinv24283 Davidia involucrata HOM05D003347 ORTHO05D003821 9.7e-25 118.2 231 66.7
arahy.Tifrunner.gnm1.ann1.CXB9HG Arachis hypogaea HOM05D003347 ORTHO05D003821 6.3e-24 115.5 231 73.6
HanXRQChr03g0071751 Helianthus annuus HOM05D003347 ORTHO05D003821 1.4e-23 114.4 200 68.5
Eucgr.H05071 Eucalyptus grandis HOM05D003347 ORTHO05D003821 1.2e-22 111.3 272 64.0
MD15G1423300 Malus domestica HOM05D003347 ORTHO05D003821 1.5e-22 110.9 163 75.5
Dinv19368 Davidia involucrata HOM05D003347 ORTHO05D003821 3.4e-22 109.8 272 70.2
TPR.G2109 Trifolium pratense HOM05D003347 ORTHO05D003821 3.4e-22 109.8 271 70.8
Medtr2g007150 Medicago truncatula HOM05D003347 ORTHO05D003821 5.9e-22 109.0 269 69.9
Duzib248G0125 Durio zibethinus HOM05D003347 ORTHO05D003821 7.7e-22 108.6 171 62.0
Phvul.006G214600 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 7.7e-22 108.6 231 66.7
SGA_v2.0_scaffold1G00306 Striga asiatica HOM05D003347 ORTHO05D003821 7.7e-22 108.6 200 68.5
TWI79G0161 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.7e-21 107.5 272 48.9
Rhsim10G0131200 Rhododendron simsii HOM05D003347 ORTHO05D003821 2.2e-21 107.1 283 59.7
Hma1.2p1_0930F.1_g238020 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 2.9e-21 106.7 180 67.8
Dinv05136 Davidia involucrata HOM05D000040 ORTHO05D000267 5.0e-21 105.9 260 68.1
CANSAT11G2200 Cannabis sativa HOM05D003347 ORTHO05D003821 8.5e-21 105.1 289 60.6
Lj9C306T9 Lonicera japonica HOM05D003347 ORTHO05D003821 1.1e-20 104.8 157 82.2
CiPaw.03G114900 Carya illinoinensis HOM05D003347 ORTHO05D003821 1.4e-20 104.4 190 68.4
Sc03g0004210 Simmondsia chinensis HOM05D003347 ORTHO05D003821 1.4e-20 104.4 283 61.1
AUR62042720 Chenopodium quinoa HOM05D003347 ORTHO05D003821 2.5e-20 103.6 231 64.1
Atru.chr4.1125 Acer truncatum HOM05D003347 ORTHO05D003821 3.2e-20 103.2 193 58.5
Manes.07G015700 Manihot esculenta HOM05D003347 ORTHO05D003821 3.2e-20 103.2 232 65.9
Cfa002207 Carpinus fangiana HOM05D003347 ORTHO05D003821 7.2e-20 102.1 182 46.2
Prupe.1G568600 Prunus persica HOM05D003347 ORTHO05D003821 1.2e-19 101.3 296 60.1
Zm00001eb197610 Zea mays HOM05D003347 ORTHO05D003821 1.6e-19 100.9 272 55.5
DCAR_029250 Daucus carota HOM05D003347 ORTHO05D003821 2.1e-19 100.5 233 72.5
Haze_25385 Corylus avellana HOM05D003347 ORTHO05D003821 4.7e-19 99.4 154 63.0
Potri.001G211000 Populus trichocarpa HOM05D003347 ORTHO05D003821 4.7e-19 99.4 175 56.0
VMungo0540G0141 Vigna mungo HOM05D003347 ORTHO05D003821 6.1e-19 99.0 270 60.7
TWI59G0889 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 1.4e-18 97.8 95 66.3
Zm00001eb113690 Zea mays HOM05D003347 ORTHO05D003821 2.3e-18 97.1 199 58.8
CiPaw.05G044400 Carya illinoinensis HOM05D003347 ORTHO05D003821 6.7e-18 95.5 269 53.2
FAN16G0856 Fragaria x ananassa HOM05D003347 ORTHO05D003821 8.8e-18 95.1 301 60.5
Actinidia26147 Actinidia chinensis HOM05D003347 ORTHO05D003821 4.4e-17 92.8 201 52.2
QL10p039663 Quercus lobata HOM05D003347 ORTHO05D003821 1.3e-16 91.3 135 48.9
Psat1g221480 Pisum sativum HOM05D003347 ORTHO05D003821 2.2e-16 90.5 296 54.1
RcHm_v2.0_Chr5g0049401 Rosa chinensis HOM05D003347 ORTHO05D003821 2.8e-16 90.1 202 67.8
A06p07670 Brassica napus HOM05D003347 ORTHO05D003821 1.1e-15 88.2 240 52.5
THA.LOC104819278 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 1.1e-15 88.2 202 56.9
Glyma.06G158900 Glycine max HOM05D003347 ORTHO05D003821 1.4e-15 87.8 159 62.9
Oeu008895.1 Olea europaea HOM05D003347 ORTHO05D003821 3.1e-15 86.7 157 68.8
THA.LOC104823661 Tarenaya hassleriana HOM05D003347 ORTHO05D003821 3.1e-15 86.7 270 56.7
Solyc05g056460.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 5.3e-15 85.9 192 50.0
Phvul.009G151400 Phaseolus vulgaris HOM05D003347 ORTHO05D003821 7.0e-15 85.5 164 76.2
ECA236G0662 Erigeron canadensis HOM05D003347 ORTHO05D003821 9.1e-15 85.1 280 53.6
Lalb_Chr11g0068781 Lupinus albus HOM05D003347 ORTHO05D003821 9.1e-15 85.1 84 67.9
Oeu037839.1 Olea europaea HOM05D003347 ORTHO05D003821 1.2e-14 84.7 196 55.1
vmacro01761 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 1.2e-14 84.7 71 69.0
Lsat_1_v5_gn_9_118960 Lactuca sativa HOM05D003347 ORTHO05D003821 1.6e-14 84.3 157 73.9
Nitab4.5_0000496g0140 Nicotiana tabacum HOM05D003347 ORTHO05D003821 1.6e-14 84.3 116 52.6
PGSC0003DMG400023323 Solanum tuberosum HOM05D003347 ORTHO05D003821 1.6e-14 84.3 204 49.5
MSTRG.23472 Avicennia marina HOM05D003347 ORTHO05D003821 2.6e-14 83.6 197 48.7
vmacro12779 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 7.7e-14 82.0 109 65.1
FAN21G3803 Fragaria x ananassa HOM05D003347 ORTHO05D003821 1.0e-13 81.6 202 67.3
BraA06t23968Z Brassica rapa HOM05D003347 ORTHO05D003821 1.3e-13 81.3 210 51.4
Oeu033124.1 Olea europaea HOM05D002729 ORTHO05D003163 1.7e-13 80.9 71 66.2
Cpa.g.sc37.62 Carica papaya HOM05D003347 ORTHO05D003821 2.2e-13 80.5 71 64.8
EL10Ac6g14071 Beta vulgaris HOM05D003347 ORTHO05D003821 2.9e-13 80.1 260 63.1
Sed0017913 Sechium edule HOM05D003347 ORTHO05D003821 2.9e-13 80.1 75 68.0
VMungo1309G3119 Vigna mungo HOM05D003347 ORTHO05D003821 2.9e-13 80.1 163 71.8
Oeu008894.1 Olea europaea HOM05D003347 ORTHO05D003821 6.5e-13 79.0 375 48.5
FvH4_3g26951 Fragaria vesca HOM05D003347 ORTHO05D003821 8.5e-13 78.6 299 63.5
Hma1.2p1_1197F.1_g266100 Hydrangea macrophylla HOM05D003347 ORTHO05D003821 1.1e-12 78.2 68 67.6
SEGI_15810 Sequoiadendron giganteum HOM05D003347 ORTHO05D003821 1.1e-12 78.2 263 65.0
BolC5t29665H Brassica oleracea HOM05D003347 ORTHO05D003821 1.5e-12 77.8 210 53.8
Lj1g0014274 Lotus japonicus HOM05D003347 ORTHO05D003821 1.5e-12 77.8 151 72.2
Manes.12G147600 Manihot esculenta HOM05D003347 ORTHO05D003821 1.5e-12 77.8 178 59.6
TPR.G28695 Trifolium pratense HOM05D003347 ORTHO05D003821 1.5e-12 77.8 114 50.9
COL.COLO4_17865 Corchorus olitorius HOM05D003347 ORTHO05D003821 1.9e-12 77.4 148 59.5
Lj4A831G75 Lonicera japonica HOM05D003347 ORTHO05D003821 2.5e-12 77.0 59 76.3
Actinidia06603 Actinidia chinensis HOM05D003347 ORTHO05D003821 4.2e-12 76.3 260 62.7
FAN11G2552 Fragaria x ananassa HOM05D003347 ORTHO05D003821 4.2e-12 76.3 201 66.2
Peaxi162Scf00152g01328 Petunia axillaris HOM05D003347 ORTHO05D003821 4.2e-12 76.3 214 56.5
Potri.019G001900 Populus trichocarpa HOM05D003347 ORTHO05D003821 4.2e-12 76.3 176 57.4
FAN28G2623 Fragaria x ananassa HOM05D003347 ORTHO05D003821 5.5e-12 75.9 100 56.0
Lsat_1_v5_gn_1_80721 Lactuca sativa HOM05D002427 ORTHO05D002818 5.5e-12 75.9 119 47.9
COL.COLO4_12116 Corchorus olitorius HOM05D012218 ORTHO05D003821 7.2e-12 75.5 192 56.8
QL11p018508 Quercus lobata HOM05D003347 ORTHO05D003821 7.2e-12 75.5 157 73.2
CAN.G1577.23 Capsicum annuum HOM05D003347 ORTHO05D003821 9.4e-12 75.1 305 48.9
FAN25G2408 Fragaria x ananassa HOM05D003347 ORTHO05D003821 1.2e-11 74.7 297 60.3
MD08G1229400 Malus domestica HOM05D003347 ORTHO05D003821 1.2e-11 74.7 155 76.1
AUR62006920 Chenopodium quinoa HOM05D003347 ORTHO05D003821 2.1e-11 73.9 153 55.6
CiPaw.06G147300 Carya illinoinensis HOM05D003347 ORTHO05D003821 2.7e-11 73.6 231 62.8
ClCG09G014210 Citrullus lanatus HOM05D003347 ORTHO05D003821 2.7e-11 73.6 302 52.0
Migut.H00863 Erythranthe guttata HOM05D003347 ORTHO05D003821 2.7e-11 73.6 203 42.4
Thhalv10008376m.g Eutrema salsugineum HOM05D003347 ORTHO05D003821 2.7e-11 73.6 239 57.3
Glyma.08G186200 Glycine max HOM05D003347 ORTHO05D003821 2.7e-11 73.6 270 58.9
Gorai.006G007100 Gossypium raimondii HOM05D003347 ORTHO05D003821 2.7e-11 73.6 190 52.1
HanXRQChr01g0017031 Helianthus annuus HOM05D003347 ORTHO05D003821 2.7e-11 73.6 96 53.1
vmacro19891 Vaccinium macrocarpon HOM05D003347 ORTHO05D003821 2.7e-11 73.6 231 59.7
Pp3c15_6590 Physcomitrium patens HOM05D003347 ORTHO05D003821 3.6e-11 73.2 182 64.3
Potri.001G306100 Populus trichocarpa HOM05D003347 ORTHO05D003821 3.6e-11 73.2 82 67.1
Hund12985 Selenicereus undatus HOM05D003347 ORTHO05D003821 3.6e-11 73.2 188 52.7
Gohir.A09G006400 Gossypium hirsutum HOM05D003347 ORTHO05D003821 4.7e-11 72.8 194 50.0
FAN19G3034 Fragaria x ananassa HOM05D003347 ORTHO05D003821 6.1e-11 72.4 72 59.7
Psat5g058160 Pisum sativum HOM05D003347 ORTHO05D003821 1.0e-10 71.6 73 58.9
Cc02_g22510 Coffea canephora HOM05D003347 ORTHO05D003821 1.4e-10 71.2 157 60.5
Prupe.4G280500 Prunus persica HOM05D003347 ORTHO05D003821 1.4e-10 71.2 103 56.3
Gohir.D09G005500 Gossypium hirsutum HOM05D003347 ORTHO05D003821 1.8e-10 70.9 272 52.9
Sopen05g034850 Solanum pennellii HOM05D003347 ORTHO05D003821 1.8e-10 70.9 200 48.0
Cpa.g.sc113.60 Carica papaya HOM05D003347 ORTHO05D003821 3.0e-10 70.1 231 59.7
Carub.0001s1045 Capsella rubella HOM05D003347 ORTHO05D003821 4.0e-10 69.7 210 53.3
Thecc.01G142300 Theobroma cacao HOM05D003347 ORTHO05D003821 5.2e-10 69.3 191 50.8
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 6.7e-10 68.9 155 73.5
EL10Ac4g09689 Beta vulgaris HOM05D003347 ORTHO05D003821 5.7e-09 65.9 261 40.2
Sc09g0002030 Simmondsia chinensis HOM05D003347 ORTHO05D003821 7.5e-09 65.5 75 57.3
Glyma.15G046600 Glycine max HOM05D003347 ORTHO05D003821 9.7e-09 65.1 283 55.5
Psat5g058080 Pisum sativum HOM05D003347 ORTHO05D003821 1.3e-08 64.7 69 56.5
arahy.Tifrunner.gnm1.ann1.X7GISI Arachis hypogaea HOM05D003347 ORTHO05D003821 1.7e-08 64.3 75 56.0
Os10g0214400 Oryza sativa ssp. japonica HOM05D003347 ORTHO05D003821 1.7e-08 64.3 176 50.0
BcaC05g24971 Brassica carinata HOM05D003347 ORTHO05D003821 2.2e-08 63.9 175 56.6
C05p09260 Brassica napus HOM05D003347 ORTHO05D003821 2.8e-08 63.5 190 55.3
Nitab4.5_0003344g0020 Nicotiana tabacum HOM05D003347 ORTHO05D003821 2.8e-08 63.5 129 74.4
THA.LOC104819474 Tarenaya hassleriana HOM05D012923 ORTHO05D014747 2.8e-08 63.5 86 50.0
CARHR051920 Cardamine hirsuta HOM05D003347 ORTHO05D003821 3.7e-08 63.2 155 59.4
FvH4_1g25270 Fragaria vesca HOM05D003347 ORTHO05D003821 4.8e-08 62.8 67 56.7
RcHm_v2.0_Chr2g0123211 Rosa chinensis HOM05D003347 ORTHO05D003821 4.8e-08 62.8 72 55.6
Solyc01g104160.4 Solanum lycopersicum HOM05D003347 ORTHO05D003821 4.8e-08 62.8 199 61.3
TWI23G0580 Tripterygium wilfordii HOM05D003347 ORTHO05D003821 4.8e-08 62.8 191 64.9
Sp1g09610 Schrenkiella parvula HOM05D003347 ORTHO05D003821 1.1e-07 61.6 132 49.2
Sabra19G0015000 Salix brachista HOM05D003347 ORTHO05D003821 1.8e-07 60.8 51 66.7
MELO3C023199.2 Cucumis melo HOM05D003347 ORTHO05D003821 2.4e-07 60.5 96 53.1
MD15G1137800 Malus domestica HOM05D003347 ORTHO05D003821 2.4e-07 60.5 189 52.9
SMO163G0068 Selaginella moellendorffii HOM05D003347 ORTHO05D003821 4.1e-07 59.7 157 51.0
Ciclev10002126m.g Citrus clementina HOM05D003347 ORTHO05D003821 5.3e-07 59.3 272 58.1
Pp3c9_6610 Physcomitrium patens HOM05D003347 ORTHO05D003821 7.0e-07 58.9 284 51.4
unitig_60.g25508 Utricularia gibba HOM05D003347 ORTHO05D003821 7.0e-07 58.9 132 41.7
SGA_v2.0_scaffold189G40392 Striga asiatica HOM05D000087 ORTHO05D000793 1.2e-06 58.2 110 44.5
Peaxi162Scf00011g00421 Petunia axillaris HOM05D003347 ORTHO05D003821 2.0e-06 57.4 145 51.7
Lj4A831G76 Lonicera japonica HOM05D003347 ORTHO05D003821 4.5e-06 56.2 71 76.1


User provided reference genes

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