Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g28224 Nelumbo nucifera HOM05D003827 ORTHO05D004518 4.9e-137 491.1 245 100.0
Nn1g02509 Nelumbo nucifera HOM05D003827 ORTHO05D004518 2.8e-92 342.4 247 75.3
Nn3g19462 Nelumbo nucifera HOM05D003827 ORTHO05D004518 1.2e-74 283.9 236 63.6
TAR633G1445 Trochodendron aralioides HOM05D003827 ORTHO05D004518 1.1e-59 234.2 246 57.7
TAR362G1025 Trochodendron aralioides HOM05D003827 ORTHO05D004518 2.4e-59 233.0 251 56.6
GSVIVG01003137001 Vitis vinifera HOM05D003827 ORTHO05D004518 2.3e-49 199.9 228 56.1
Dinv22492 Davidia involucrata HOM05D003827 ORTHO05D004518 8.9e-46 188.0 248 51.6
Atru.chr5.1540 Acer truncatum HOM05D003827 ORTHO05D004518 1.2e-45 187.6 237 50.6
ClCG07G000540 Citrullus lanatus HOM05D003827 ORTHO05D004518 3.4e-45 186.0 229 48.9
COL.COLO4_06099 Corchorus olitorius HOM05D003827 ORTHO05D004518 9.8e-45 184.5 205 58.5
MELO3C014319.2 Cucumis melo HOM05D003827 ORTHO05D004518 1.3e-44 184.1 229 48.9
CSS0001059 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 2.4e-43 179.9 237 46.4
Aqoxy5G00378 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 4.1e-43 179.1 241 50.2
Haze_04629 Corylus avellana HOM05D003827 ORTHO05D004518 7.8e-42 174.9 251 45.0
Duzib138G1561 Durio zibethinus HOM05D003827 ORTHO05D004518 7.8e-42 174.9 226 50.9
CiPaw.07G086100 Carya illinoinensis HOM05D003827 ORTHO05D004518 1.0e-41 174.5 241 46.1
MBI04_g36520_MAGBIO Magnolia biondii HOM05D003827 ORTHO05D004518 1.0e-41 174.5 228 47.4
Manes.05G082700 Manihot esculenta HOM05D003827 ORTHO05D004518 1.3e-41 174.1 220 49.1
Sed0018560 Sechium edule HOM05D003827 ORTHO05D004518 1.7e-41 173.7 220 48.2
Prupe.8G233400 Prunus persica HOM05D003827 ORTHO05D004518 2.3e-41 173.3 221 50.2
Cfa006213 Carpinus fangiana HOM05D003827 ORTHO05D004518 3.0e-41 172.9 246 46.3
Thecc.01G269500 Theobroma cacao HOM05D003827 ORTHO05D004518 3.0e-41 172.9 209 55.5
Duzib133G0640 Durio zibethinus HOM05D003827 ORTHO05D004518 6.6e-41 171.8 200 56.0
Gohir.D11G131801 Gossypium hirsutum HOM05D003827 ORTHO05D004518 8.6e-41 171.4 198 55.6
Gohir.A11G126200 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.9e-40 170.2 199 55.3
CANSAT25G1147 Cannabis sativa HOM05D003827 ORTHO05D004518 2.5e-40 169.9 236 48.7
Potri.005G216300 Populus trichocarpa HOM05D003827 ORTHO05D004518 2.5e-40 169.9 213 48.4
Manes.01G203100 Manihot esculenta HOM05D003827 ORTHO05D004518 3.3e-40 169.5 225 48.0
MD03G1256300 Malus domestica HOM05D003827 ORTHO05D004518 5.6e-40 168.7 241 46.5
Gorai.007G140900 Gossypium raimondii HOM05D003827 ORTHO05D004518 1.2e-39 167.5 199 54.3
FAN15G1200 Fragaria x ananassa HOM05D003827 ORTHO05D004518 1.6e-39 167.2 227 48.0
FvH4_2g22810 Fragaria vesca HOM05D003827 ORTHO05D004518 2.8e-39 166.4 227 48.5
FAN24G2611 Fragaria x ananassa HOM05D003827 ORTHO05D004518 2.8e-39 166.4 227 48.5
Sabra05G0165800 Salix brachista HOM05D003827 ORTHO05D004518 2.8e-39 166.4 213 48.8
Solyc07g008670.3 Solanum lycopersicum HOM05D003827 ORTHO05D004518 1.8e-38 163.7 199 49.7
Sopen07g004600 Solanum pennellii HOM05D003827 ORTHO05D004518 1.8e-38 163.7 199 49.7
CSS0010046 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 2.0e-37 160.2 231 48.1
Potri.002G046700 Populus trichocarpa HOM05D003827 ORTHO05D004518 2.6e-37 159.8 222 49.5
FAN20G2722 Fragaria x ananassa HOM05D003827 ORTHO05D004518 4.4e-37 159.1 227 47.6
Sabra02G0037600 Salix brachista HOM05D003827 ORTHO05D004518 2.2e-36 156.8 245 44.9
Ciclev10018911m.g Citrus clementina HOM05D003827 ORTHO05D004518 2.9e-36 156.4 240 44.6
Cc00_g27210 Coffea canephora HOM05D003827 ORTHO05D004518 3.7e-36 156.0 214 50.0
RcHm_v2.0_Chr6g0289731 Rosa chinensis HOM05D003827 ORTHO05D004518 3.7e-36 156.0 172 54.1
MSTRG.21519 Avicennia marina HOM05D003827 ORTHO05D004518 2.4e-35 153.3 218 48.2
Nitab4.5_0010556g0020 Nicotiana tabacum HOM05D003827 ORTHO05D004518 2.4e-35 153.3 237 43.9
Peaxi162Scf01038g00148 Petunia axillaris HOM05D003827 ORTHO05D004518 5.4e-35 152.1 231 45.0
FAN27G1464 Fragaria x ananassa HOM05D003827 ORTHO05D004518 1.6e-34 150.6 170 52.9
CsaV3_2G013800 Cucumis sativus L. HOM05D003827 ORTHO05D004518 2.0e-34 150.2 220 45.9
Cpa.g.c31397 Carica papaya HOM05D003827 ORTHO05D004518 4.6e-34 149.1 253 44.7
Lj1A56T63 Lonicera japonica HOM05D003827 ORTHO05D004518 6.0e-34 148.7 172 55.2
Duzib211G0278 Durio zibethinus HOM05D003827 ORTHO05D004518 7.8e-34 148.3 231 46.8
Nitab4.5_0000617g0200 Nicotiana tabacum HOM05D003827 ORTHO05D004518 7.8e-34 148.3 244 43.4
MD11G1277100 Malus domestica HOM05D003827 ORTHO05D004518 1.7e-33 147.1 222 45.5
Nn1g00777 Nelumbo nucifera HOM05D003827 ORTHO05D004518 3.9e-33 146.0 115 64.3
Actinidia21149 Actinidia chinensis HOM05D003827 ORTHO05D004518 8.6e-33 144.8 237 43.9
Actinidia24929 Actinidia chinensis HOM05D003827 ORTHO05D004518 8.6e-33 144.8 234 41.9
Aqoxy2G03489 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 1.2e-31 141.0 171 51.5
Gohir.A07G207900 Gossypium hirsutum HOM05D003827 ORTHO05D004518 2.8e-31 139.8 225 46.7
Eucgr.B01477 Eucalyptus grandis HOM05D003827 ORTHO05D004518 4.7e-31 139.0 185 51.9
Migut.D00347 Erythranthe guttata HOM05D003827 ORTHO05D004518 8.9e-30 134.8 190 48.9
Oeu058798.1 Olea europaea HOM05D003827 ORTHO05D004518 1.5e-29 134.0 150 55.3
SalBow6G3195 Salvia bowleyana HOM05D003827 ORTHO05D004518 2.6e-29 133.3 162 51.9
Lalb_Chr06g0162731 Lupinus albus HOM05D003827 ORTHO05D004518 4.4e-29 132.5 190 47.9
THA.LOC104817570 Tarenaya hassleriana HOM05D003827 ORTHO05D004518 1.3e-28 131.0 168 51.2
CDE07G1346 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 2.2e-28 130.2 181 43.1
Oeu011513.1 Olea europaea HOM05D003827 ORTHO05D004518 2.9e-28 129.8 169 48.5
Lsat_1_v5_gn_5_184780 Lactuca sativa HOM05D003827 ORTHO05D004518 4.9e-28 129.0 226 42.0
MSTRG.12545 Avicennia marina HOM05D003827 ORTHO05D004518 1.1e-27 127.9 202 46.0
QL12p042499 Quercus lobata HOM05D003827 ORTHO05D004518 1.4e-27 127.5 216 44.9
PGSC0003DMG400022986 Solanum tuberosum HOM05D003827 ORTHO05D004518 1.4e-27 127.5 187 45.5
Actinidia19972 Actinidia chinensis HOM05D003827 ORTHO05D004518 5.4e-27 125.6 130 57.7
SalBow4G1883 Salvia bowleyana HOM05D003827 ORTHO05D004518 5.4e-27 125.6 147 52.4
SalBow4G1898 Salvia bowleyana HOM05D003827 ORTHO05D004518 1.2e-26 124.4 147 52.4
Gohir.D08G071700 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.6e-26 124.0 200 47.0
MSTRG.18275 Avicennia marina HOM05D003827 ORTHO05D004518 2.7e-26 123.2 202 42.6
Gorai.004G075700 Gossypium raimondii HOM05D003827 ORTHO05D004518 3.5e-26 122.9 217 44.2
HanXRQChr01g0006931 Helianthus annuus HOM05D003827 ORTHO05D004518 3.5e-26 122.9 229 38.4
Oeu002272.1 Olea europaea HOM05D003827 ORTHO05D004518 1.0e-25 121.3 206 43.2
Gohir.A08G062500 Gossypium hirsutum HOM05D003827 ORTHO05D004518 2.3e-25 120.2 200 45.5
Aa31LG10G17280 Aethionema arabicum HOM05D003827 ORTHO05D004518 6.6e-25 118.6 248 37.1
PGR119G2143 Punica granatum HOM05D003827 ORTHO05D004518 6.6e-25 118.6 215 44.7
ECA248G3364 Erigeron canadensis HOM05D003827 ORTHO05D004518 1.9e-24 117.1 167 47.3
Migut.N02178 Erythranthe guttata HOM05D003827 ORTHO05D004518 1.9e-24 117.1 205 40.5
vmacro02620 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 4.3e-24 115.9 176 47.7
MSTRG.17468 Avicennia marina HOM05D003827 ORTHO05D004518 1.6e-23 114.0 200 40.5
HanXRQChr06g0177881 Helianthus annuus HOM05D003827 ORTHO05D004518 3.6e-23 112.8 212 42.9
PSO210G6408 Papaver somniferum HOM05D003827 ORTHO05D004518 3.6e-23 112.8 210 41.0
PSO832G0360 Papaver somniferum HOM05D003827 ORTHO05D004518 1.8e-22 110.5 209 40.7
Sc05g0001120 Simmondsia chinensis HOM05D003827 ORTHO05D004518 3.1e-22 109.8 234 38.9
arahy.Tifrunner.gnm1.ann1.735JS3 Arachis hypogaea HOM05D003827 ORTHO05D004518 1.5e-21 107.5 169 46.2
Nn2g11247 Nelumbo nucifera HOM05D003827 ORTHO05D004518 5.8e-21 105.5 70 78.6
Ca_08637_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 7.6e-21 105.1 168 44.6
VMungo0720G1763 Vigna mungo HOM05D003827 ORTHO05D004518 2.2e-20 103.6 207 41.1
Phvul.007G175800 Phaseolus vulgaris HOM05D003827 ORTHO05D004518 2.9e-20 103.2 207 41.1
arahy.Tifrunner.gnm1.ann1.900HG3 Arachis hypogaea HOM05D003827 ORTHO05D004518 6.4e-20 102.1 181 43.6
CARHR291540 Cardamine hirsuta HOM05D003827 ORTHO05D004518 1.4e-19 100.9 171 42.1
CDE06G2016 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 2.4e-19 100.1 181 37.6
Lj5g0023922 Lotus japonicus HOM05D003827 ORTHO05D004518 4.1e-19 99.4 148 46.6
SHI10022 Sapria himalayana HOM05D003827 ORTHO05D004518 5.4e-19 99.0 157 42.7
Hund02868 Selenicereus undatus HOM05D003827 ORTHO05D004518 1.2e-18 97.8 151 45.7
Ca_09721_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 2.1e-18 97.1 146 45.2
Medtr1g071070 Medicago truncatula HOM05D003827 ORTHO05D004518 2.1e-18 97.1 178 40.4
Glyma.10G031000 Glycine max HOM05D003827 ORTHO05D004518 4.6e-18 95.9 166 45.8
Rhsim01G0271400 Rhododendron simsii HOM05D003827 ORTHO05D004518 1.0e-17 94.7 231 35.5
Psat3g061520 Pisum sativum HOM05D003827 ORTHO05D004518 1.7e-17 94.0 165 40.0
Glyma.02G143400 Glycine max HOM05D003827 ORTHO05D004518 3.0e-17 93.2 188 42.6
Ah.02g111340 Amaranthus hybridus HOM05D003827 ORTHO05D004518 8.7e-17 91.7 170 42.4
DCAR_002692 Daucus carota HOM05D003827 ORTHO05D004518 8.7e-17 91.7 184 38.6
EL10Ac5g10483 Beta vulgaris HOM05D003827 ORTHO05D004518 1.1e-16 91.3 170 47.1
Nn1g04862 Nelumbo nucifera HOM05D003827 ORTHO05D004518 1.9e-16 90.5 59 79.7
vmacro14883 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 2.5e-16 90.1 182 39.0
AUR62011961 Chenopodium quinoa HOM05D003827 ORTHO05D004518 3.3e-16 89.7 196 39.8
DCAR_005854 Daucus carota HOM05D003827 ORTHO05D004518 4.3e-16 89.4 167 38.3
Nn1g04863 Nelumbo nucifera HOM05D003827 ORTHO05D004518 9.6e-16 88.2 53 83.0
Psat6g058320 Pisum sativum HOM05D003827 ORTHO05D004518 1.6e-15 87.4 135 44.4
AUR62032274 Chenopodium quinoa HOM05D003827 ORTHO05D004518 2.8e-15 86.7 164 42.1
DCAR_012508 Daucus carota HOM05D003827 ORTHO05D004518 2.8e-15 86.7 225 34.7
Lj1g0025199 Lotus japonicus HOM05D003827 ORTHO05D004518 2.8e-15 86.7 193 36.3
TPR.G39068 Trifolium pratense HOM05D003827 ORTHO05D000002 2.8e-15 86.7 155 40.0
Medtr7g095890 Medicago truncatula HOM05D003827 ORTHO05D004518 8.1e-15 85.1 164 40.9
SGA_v2.0_scaffold81G26054 Striga asiatica HOM05D003827 ORTHO05D004518 5.2e-14 82.4 185 37.8
TPR.G19092 Trifolium pratense HOM05D003827 ORTHO05D004518 1.2e-13 81.3 248 34.3
SEGI_41162 Sequoiadendron giganteum HOM05D001693 ORTHO05D001588 2.0e-13 80.5 144 42.4
HPP92_024347 Vanilla planifolia HOM05D003827 ORTHO05D004518 2.6e-13 80.1 143 37.1
arahy.Tifrunner.gnm1.ann1.S69P4W Arachis hypogaea HOM05D003827 ORTHO05D004518 4.4e-13 79.3 135 39.3
arahy.Tifrunner.gnm1.ann1.X14VTN Arachis hypogaea HOM05D003827 ORTHO05D004518 5.8e-13 79.0 135 39.3
Lsat_1_v5_gn_9_7940 Lactuca sativa HOM05D003827 ORTHO05D004518 7.6e-13 78.6 214 30.8
Rhsim13G0030000 Rhododendron simsii HOM05D003827 ORTHO05D004518 2.9e-12 76.6 224 34.8
Dinv34555 Davidia involucrata HOM05D003827 ORTHO05D004518 3.8e-12 76.3 109 49.5
Carub.0005s3005 Capsella rubella HOM05D003827 ORTHO05D004518 4.9e-12 75.9 143 39.2
BcaC07g40810 Brassica carinata HOM05D003827 ORTHO05D004518 6.4e-12 75.5 185 37.3
C08p38040 Brassica napus HOM05D003827 ORTHO05D004518 6.4e-12 75.5 185 37.3
BraA09t40917Z Brassica rapa HOM05D003827 ORTHO05D004518 6.4e-12 75.5 195 35.4
BcaC07g42691 Brassica carinata HOM05D003827 ORTHO05D004518 8.4e-12 75.1 172 36.6
A09p55100 Brassica napus HOM05D003827 ORTHO05D004518 8.4e-12 75.1 195 35.4
BolC8t51378H Brassica oleracea HOM05D003827 ORTHO05D004518 8.4e-12 75.1 164 39.0
ECA247G1386 Erigeron canadensis HOM05D003827 ORTHO05D004518 1.4e-11 74.3 159 37.1
ATR0665G375 Amborella trichopoda HOM05D003827 ORTHO05D004518 3.2e-11 73.2 156 35.3
Zm00001eb200650 Zea mays HOM05D003827 ORTHO05D004518 3.2e-11 73.2 163 39.3
AL5G46290 Arabidopsis lyrata HOM05D003827 ORTHO05D004518 2.7e-10 70.1 157 40.1
HanXRQChr10g0282171 Helianthus annuus HOM05D003827 ORTHO05D004518 7.8e-10 68.6 181 32.0
Os11g0587300 Oryza sativa ssp. japonica HOM05D003827 ORTHO05D004518 1.3e-09 67.8 190 36.8
AT3G63430 Arabidopsis thaliana HOM05D003827 ORTHO05D004518 1.1e-08 64.7 144 36.1
Sp5g00120 Schrenkiella parvula HOM05D003827 ORTHO05D004518 3.3e-08 63.2 120 42.5
TAR622G1027 Trochodendron aralioides HOM05D001693 ORTHO05D001588 6.2e-07 58.9 215 30.2
Cfa019350 Carpinus fangiana HOM05D001693 ORTHO05D001588 3.1e-06 56.6 179 31.8
Potri.015G058900 Populus trichocarpa HOM05D001693 ORTHO05D001588 5.3e-06 55.8 105 38.1
CANSAT80G0093 Cannabis sativa HOM05D001693 ORTHO05D001588 9.0e-06 55.1 85 36.5
Thhalv10005863m.g Eutrema salsugineum HOM05D003827 ORTHO05D004518 9.0e-06 55.1 126 37.3
TAR371G0403 Trochodendron aralioides HOM05D001693 ORTHO05D001588 9.0e-06 55.1 147 33.3


User provided reference genes

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