Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g28008 Nelumbo nucifera HOM05D026975 ORTHO05D000252 7.6e-128 460.7 263 100.0
Nn5g28012 Nelumbo nucifera HOM05D026975 ORTHO05D000252 4.6e-125 451.4 263 98.1
Nn5g28025 Nelumbo nucifera HOM05D026975 ORTHO05D000252 6.5e-79 298.1 183 98.9
Nn2g11738 Nelumbo nucifera HOM05D000401 ORTHO05D000252 1.5e-67 260.4 287 61.7
Nn4g22321 Nelumbo nucifera HOM05D000401 ORTHO05D000252 1.7e-66 256.9 251 68.5
Nn3g17829 Nelumbo nucifera HOM05D000401 ORTHO05D000252 4.1e-65 252.3 230 72.6
Nn3g18352 Nelumbo nucifera HOM05D000401 ORTHO05D000252 1.5e-43 180.6 280 53.2
Nn8g39175 Nelumbo nucifera HOM05D000401 ORTHO05D000252 9.9e-43 177.9 288 51.0
TAR624G0530 Trochodendron aralioides HOM05D000401 ORTHO05D000252 1.3e-34 151.0 297 39.1
Duzib168G1191 Durio zibethinus HOM05D000401 ORTHO05D000252 2.1e-32 143.7 315 37.8
Manes.16G115800 Manihot esculenta HOM05D000401 ORTHO05D000252 1.7e-26 124.0 301 36.2
Sabra18G0068000 Salix brachista HOM05D000401 ORTHO05D000252 2.2e-26 123.6 301 36.2
Duzib187G1081 Durio zibethinus HOM05D000401 ORTHO05D000252 3.8e-26 122.9 326 33.4
Thecc.09G110000 Theobroma cacao HOM05D000401 ORTHO05D000252 4.9e-26 122.5 319 33.9
Potri.018G080100 Populus trichocarpa HOM05D000401 ORTHO05D000252 2.1e-24 117.1 319 32.9
QL02p085275 Quercus lobata HOM05D000401 ORTHO05D000252 6.0e-24 115.5 300 36.0
Dinv41606 Davidia involucrata HOM05D000401 ORTHO05D000252 1.7e-23 114.0 289 37.4
Gohir.D06G061200 Gossypium hirsutum HOM05D000401 ORTHO05D000252 1.7e-23 114.0 305 34.1
Duzib150G0467 Durio zibethinus HOM05D000401 ORTHO05D000252 3.9e-23 112.8 320 32.2
Gorai.009G024900 Gossypium raimondii HOM05D000401 ORTHO05D000252 3.9e-23 112.8 320 34.4
Gorai.010G071300 Gossypium raimondii HOM05D000401 ORTHO05D000252 3.9e-23 112.8 305 33.8
Dinv36634 Davidia involucrata HOM05D000401 ORTHO05D000252 1.9e-22 110.5 286 33.2
Gohir.D05G024800 Gossypium hirsutum HOM05D000401 ORTHO05D000252 2.5e-22 110.2 320 34.1
Gohir.A06G062901 Gossypium hirsutum HOM05D000401 ORTHO05D000252 1.3e-21 107.8 307 33.6
TAR383G0966 Trochodendron aralioides HOM05D000401 ORTHO05D000252 3.6e-21 106.3 126 54.0
TAR636G3668 Trochodendron aralioides HOM05D026975 ORTHO05D000252 8.1e-21 105.1 219 36.1
CSS0043063 Camellia sinensis var. sinensis HOM05D000401 ORTHO05D000252 1.4e-20 104.4 289 36.7
Gohir.A05G023300 Gossypium hirsutum HOM05D000401 ORTHO05D000252 2.4e-20 103.6 307 34.2
CiPaw.03G231800 Carya illinoinensis HOM05D000401 ORTHO05D000252 5.3e-20 102.4 294 33.3
Aqoxy7G01661 Aquilegia oxysepala HOM05D000401 ORTHO05D000252 1.5e-19 100.9 296 35.8
CSS0040663 Camellia sinensis var. sinensis HOM05D000401 ORTHO05D000252 2.9e-18 96.7 291 35.4
Haze_25719 Corylus avellana HOM05D000401 ORTHO05D000252 3.8e-18 96.3 287 31.4
GSVIVG01015387001 Vitis vinifera HOM05D000193 ORTHO05D000402 3.8e-18 96.3 296 34.8
Haze_25726 Corylus avellana HOM05D000401 ORTHO05D000252 6.4e-18 95.5 287 30.3
Cfa021566 Carpinus fangiana HOM05D000401 ORTHO05D000252 1.9e-17 94.0 269 29.7
CiPaw.04G163900 Carya illinoinensis HOM05D000401 ORTHO05D000252 1.9e-17 94.0 298 30.5
Cpa.g.sc23.106 Carica papaya HOM05D000401 ORTHO05D000252 5.4e-17 92.4 316 30.7
Phvul.002G313000 Phaseolus vulgaris HOM05D000401 ORTHO05D000252 1.6e-16 90.9 296 33.4
MBI01_g06514_MAGBIO Magnolia biondii HOM05D000401 ORTHO05D000252 2.7e-16 90.1 292 32.2
Nn3g16346 Nelumbo nucifera HOM05D000401 ORTHO05D000252 2.7e-16 90.1 68 69.1
Gorai.001G005400 Gossypium raimondii HOM05D000401 ORTHO05D000252 6.0e-16 89.0 307 35.5
Manes.03G020900 Manihot esculenta HOM05D000401 ORTHO05D000252 6.0e-16 89.0 303 33.7
Gohir.A07G006200 Gossypium hirsutum HOM05D000401 ORTHO05D000252 7.9e-16 88.6 307 35.5
Cc06_g09690 Coffea canephora HOM05D000401 ORTHO05D000252 1.0e-15 88.2 301 35.9
Lalb_Chr05g0222871 Lupinus albus HOM05D000401 ORTHO05D000252 1.0e-15 88.2 289 31.1
MBI04_g22008_MAGBIO Magnolia biondii HOM05D000401 ORTHO05D000252 1.0e-15 88.2 287 32.4
VMungo0251G1019 Vigna mungo HOM05D000401 ORTHO05D000252 2.3e-15 87.0 296 31.8
Gohir.D07G005800 Gossypium hirsutum HOM05D000401 ORTHO05D000252 3.9e-15 86.3 307 34.9
Peaxi162Scf00546g00005 Petunia axillaris HOM05D000401 ORTHO05D000252 6.7e-15 85.5 283 35.3
AUR62021503 Chenopodium quinoa HOM05D000401 ORTHO05D000252 8.7e-15 85.1 240 36.2
Lalb_Chr16g0388201 Lupinus albus HOM05D000401 ORTHO05D000252 1.1e-14 84.7 290 30.7
Actinidia20371 Actinidia chinensis HOM05D000401 ORTHO05D000252 3.3e-14 83.2 255 31.8
FAN28G3032 Fragaria x ananassa HOM05D000401 ORTHO05D000252 4.0e-12 76.3 294 31.3
AUR62010992 Chenopodium quinoa HOM05D000401 ORTHO05D000252 2.0e-11 73.9 257 32.7
FAN26G3034 Fragaria x ananassa HOM05D000401 ORTHO05D000252 2.0e-11 73.9 114 44.7
Lj4g0024409 Lotus japonicus HOM05D000401 ORTHO05D000252 2.6e-11 73.6 296 31.8
Sabra06G0123700 Salix brachista HOM05D000401 ORTHO05D000252 3.4e-11 73.2 142 43.7
TWI34G0621 Tripterygium wilfordii HOM05D000401 ORTHO05D000252 3.4e-11 73.2 300 31.7
Lalb_Chr09g0331181 Lupinus albus HOM05D000401 ORTHO05D000252 5.8e-11 72.4 292 33.2
MD15G1184600 Malus domestica HOM05D000401 ORTHO05D000252 1.3e-10 71.2 293 28.7
PGSC0003DMG400000313 Solanum tuberosum HOM05D000401 ORTHO05D000252 2.2e-10 70.5 297 30.6
Oeu002235.1 Olea europaea HOM05D000401 ORTHO05D000252 2.9e-10 70.1 295 28.1
FAN19G0723 Fragaria x ananassa HOM05D000401 ORTHO05D000252 6.4e-10 68.9 113 42.5
FAN23G2499 Fragaria x ananassa HOM05D000401 ORTHO05D000252 6.4e-10 68.9 113 42.5
FvH4_1g04770 Fragaria vesca HOM05D000401 ORTHO05D000252 1.1e-09 68.2 293 30.0
Rhsim03G0242300 Rhododendron simsii HOM05D000401 ORTHO05D000252 2.4e-09 67.0 286 28.0
Nitab4.5_0002904g0110 Nicotiana tabacum HOM05D000401 ORTHO05D000252 4.2e-09 66.2 296 30.1
ATR0315G001 Amborella trichopoda HOM05D000401 ORTHO05D000252 7.1e-09 65.5 288 28.8
Medtr8g103520 Medicago truncatula HOM05D000401 ORTHO05D000252 7.1e-09 65.5 78 47.4
RhsimUnG0196700 Rhododendron simsii HOM05D000401 ORTHO05D000252 9.3e-09 65.1 286 27.6
Thecc.01G038700 Theobroma cacao HOM05D000401 ORTHO05D000252 9.3e-09 65.1 168 36.9
Solyc04g080210.1 Solanum lycopersicum HOM05D000401 ORTHO05D000252 1.2e-08 64.7 159 37.7
Glyma.08G038400 Glycine max HOM05D000401 ORTHO05D000252 1.6e-08 64.3 74 48.6
TWI09G1341 Tripterygium wilfordii HOM05D000401 ORTHO05D000252 1.6e-08 64.3 165 37.0
Glyma.05G230900 Glycine max HOM05D000401 ORTHO05D000252 2.7e-08 63.5 74 48.6
Psat7g013520 Pisum sativum HOM05D000401 ORTHO05D000252 2.7e-08 63.5 61 54.1
THA.LOC104811110 Tarenaya hassleriana HOM05D000401 ORTHO05D000252 2.7e-08 63.5 119 41.2
TPR.G21683 Trifolium pratense HOM05D000401 ORTHO05D000252 2.7e-08 63.5 74 47.3
Ah.14g082060 Amaranthus hybridus HOM05D000401 ORTHO05D000252 3.5e-08 63.2 61 54.1
PGSC0003DMG400044629 Solanum tuberosum HOM05D000401 ORTHO05D000252 3.5e-08 63.2 160 37.5
TAR628G1738 Trochodendron aralioides HOM05D000401 ORTHO05D000252 3.5e-08 63.2 169 39.1
Ca_17336_v3 Cicer arietinum L. HOM05D000401 ORTHO05D000252 4.6e-08 62.8 61 52.5
TAR376G0096 Trochodendron aralioides HOM05D000401 ORTHO05D000252 4.6e-08 62.8 159 38.4
Actinidia32681 Actinidia chinensis HOM05D000401 ORTHO05D000252 7.9e-08 62.0 121 43.0
Rhsim03G0242500 Rhododendron simsii HOM05D000401 ORTHO05D000252 7.9e-08 62.0 286 26.9
RhsimUnG0196900 Rhododendron simsii HOM05D000401 ORTHO05D000252 7.9e-08 62.0 286 26.9
Duzib147G1137 Durio zibethinus HOM05D000401 ORTHO05D000252 1.3e-07 61.2 165 38.2
TAR628G1031 Trochodendron aralioides HOM05D000401 ORTHO05D000252 1.3e-07 61.2 169 38.5
vmacro06216 Vaccinium macrocarpon HOM05D000401 ORTHO05D000252 1.3e-07 61.2 148 35.8
FAN19G2628 Fragaria x ananassa HOM05D000401 ORTHO05D000252 1.8e-07 60.8 145 37.9
THA.LOC104799076 Tarenaya hassleriana HOM05D000401 ORTHO05D000252 2.3e-07 60.5 178 38.2
CANSAT56G0932 Cannabis sativa HOM05D000401 ORTHO05D000252 3.0e-07 60.1 309 33.3
Ciclev10008914m.g Citrus clementina HOM05D000401 ORTHO05D000252 3.0e-07 60.1 61 50.8
FvH4_1g13640 Fragaria vesca HOM05D000401 ORTHO05D000252 3.0e-07 60.1 145 37.9
FAN23G0605 Fragaria x ananassa HOM05D000401 ORTHO05D000252 3.0e-07 60.1 145 37.9
FAN26G0682 Fragaria x ananassa HOM05D000401 ORTHO05D000252 3.0e-07 60.1 145 37.9
FAN28G2367 Fragaria x ananassa HOM05D000401 ORTHO05D000252 3.0e-07 60.1 145 37.9
ATR0733G013 Amborella trichopoda HOM05D000401 ORTHO05D000252 3.9e-07 59.7 316 27.8
BcaB05g23409 Brassica carinata HOM05D000401 ORTHO05D000252 3.9e-07 59.7 148 34.5
CSS0035609 Camellia sinensis var. sinensis HOM05D000401 ORTHO05D000252 3.9e-07 59.7 285 30.9
GSVIVG01009691001 Vitis vinifera HOM05D000401 ORTHO05D000252 3.9e-07 59.7 190 35.3
PSO782G1873 Papaver somniferum HOM05D000401 ORTHO05D000252 5.1e-07 59.3 307 26.4
MBI16_g36973_MAGBIO Magnolia biondii HOM05D000401 ORTHO05D000252 6.7e-07 58.9 173 35.3
Peaxi162Scf00690g00016 Petunia axillaris HOM05D000401 ORTHO05D000252 6.7e-07 58.9 168 32.1
RcHm_v2.0_Chr2g0090371 Rosa chinensis HOM05D000401 ORTHO05D000252 6.7e-07 58.9 88 43.2
Sed0024420 Sechium edule HOM05D000401 ORTHO05D000252 6.7e-07 58.9 74 45.9
AT5G19650 Arabidopsis thaliana HOM05D000401 ORTHO05D000252 8.7e-07 58.5 75 48.0
A10p20070 Brassica napus HOM05D000401 ORTHO05D000252 8.7e-07 58.5 162 32.7
C09p56540 Brassica napus HOM05D000401 ORTHO05D000252 8.7e-07 58.5 162 32.7
BolC9t58519H Brassica oleracea HOM05D000401 ORTHO05D000252 8.7e-07 58.5 162 32.7
BraA10t44081Z Brassica rapa HOM05D000401 ORTHO05D000252 8.7e-07 58.5 162 32.7
Thhalv10015317m.g Eutrema salsugineum HOM05D000401 ORTHO05D000252 8.7e-07 58.5 75 46.7
Lj7P651T21 Lonicera japonica HOM05D000401 ORTHO05D000252 8.7e-07 58.5 114 36.0
Nitab4.5_0004721g0060 Nicotiana tabacum HOM05D000401 ORTHO05D000252 8.7e-07 58.5 162 37.0
QL06p045539 Quercus lobata HOM05D000401 ORTHO05D000252 8.7e-07 58.5 155 37.4
Sp6g24740 Schrenkiella parvula HOM05D000401 ORTHO05D000252 8.7e-07 58.5 75 46.7
RcHm_v2.0_Chr2g0101991 Rosa chinensis HOM05D000401 ORTHO05D000252 1.1e-06 58.2 145 37.2
SalBow1G4624 Salvia bowleyana HOM05D000401 ORTHO05D000252 1.5e-06 57.8 63 50.8
Sc08g0007570 Simmondsia chinensis HOM05D000401 ORTHO05D000252 1.5e-06 57.8 283 33.2
Actinidia19174 Actinidia chinensis HOM05D000401 ORTHO05D000252 1.9e-06 57.4 69 49.3
EL10Ac6g14923 Beta vulgaris HOM05D000401 ORTHO05D000252 1.9e-06 57.4 68 48.5
Dinv36068 Davidia involucrata HOM05D000401 ORTHO05D000252 1.9e-06 57.4 70 50.0
AL6G31160 Arabidopsis lyrata HOM05D000401 ORTHO05D000252 2.5e-06 57.0 145 35.2
CsaV3_2G002260 Cucumis sativus L. HOM05D000401 ORTHO05D000252 2.5e-06 57.0 126 38.9
Hma1.2p1_0203F.1_g086460 Hydrangea macrophylla HOM05D000401 ORTHO05D000252 2.5e-06 57.0 93 40.9
Nitab4.5_0000110g0570 Nicotiana tabacum HOM05D000401 ORTHO05D000252 2.5e-06 57.0 161 34.2
PSO832G2898 Papaver somniferum HOM05D000401 ORTHO05D000252 2.5e-06 57.0 309 28.2
Sed0026207 Sechium edule HOM05D000401 ORTHO05D000252 3.3e-06 56.6 81 44.4
ATR0315G032 Amborella trichopoda HOM05D000401 ORTHO05D000252 5.6e-06 55.8 299 26.4
EL10Ac8g18493 Beta vulgaris HOM05D000401 ORTHO05D000252 5.6e-06 55.8 247 28.3
Lsat_1_v5_gn_5_102560 Lactuca sativa HOM05D000401 ORTHO05D000252 5.6e-06 55.8 125 39.2
Potri.007G028000 Populus trichocarpa HOM05D000401 ORTHO05D000252 5.6e-06 55.8 169 34.3
Carub.0006s1800 Capsella rubella HOM05D000401 ORTHO05D000252 9.6e-06 55.1 66 50.0
CARHR193260 Cardamine hirsuta HOM05D000401 ORTHO05D000252 9.6e-06 55.1 66 50.0
Cfa004285 Carpinus fangiana HOM05D000401 ORTHO05D000252 9.6e-06 55.1 169 38.5
MD02G1151100 Malus domestica HOM05D000401 ORTHO05D000252 9.6e-06 55.1 60 51.7
Nitab4.5_0003783g0020 Nicotiana tabacum HOM05D000401 ORTHO05D000252 9.6e-06 55.1 150 36.0


User provided reference genes

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