Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g27987 Nelumbo nucifera HOM05D008075 ORTHO05D010208 0.0e+00 2558.5 1284 100.0
Nn1g08564 Nelumbo nucifera HOM05D008075 ORTHO05D010208 3.6e-223 779.6 1421 39.5
TAR376G0152 Trochodendron aralioides HOM05D008075 ORTHO05D010208 5.5e-155 553.1 1414 33.0
Nn5g27982 Nelumbo nucifera HOM05D008075 ORTHO05D010208 4.9e-127 460.3 302 81.1
MBI03_g11141_MAGBIO Magnolia biondii HOM05D008075 ORTHO05D010208 4.4e-96 357.5 267 70.4
PSO170G3563 Papaver somniferum HOM05D008075 ORTHO05D010208 5.3e-81 307.4 382 49.0
PSO782G2813 Papaver somniferum HOM05D008075 ORTHO05D010208 5.3e-81 307.4 419 45.3
Aqoxy2G00609 Aquilegia oxysepala HOM05D008075 ORTHO05D010208 4.2e-78 297.7 271 60.9
Dinv08171 Davidia involucrata HOM05D008075 ORTHO05D010208 6.0e-77 293.9 565 37.3
GSVIVG01022404001 Vitis vinifera HOM05D008075 ORTHO05D010208 7.9e-77 293.5 256 63.3
CSS0037312 Camellia sinensis var. sinensis HOM05D008075 ORTHO05D010208 9.9e-72 276.6 256 59.4
HPP92_002184 Vanilla planifolia HOM05D008075 ORTHO05D010208 1.7e-71 275.8 303 54.8
Oeu011019.1 Olea europaea HOM05D002427 ORTHO05D002818 3.8e-71 274.6 391 44.0
Rhsim08G0001000 Rhododendron simsii HOM05D008075 ORTHO05D010208 4.2e-70 271.2 283 54.4
CiPaw.03G254600 Carya illinoinensis HOM05D008075 ORTHO05D010208 7.1e-70 270.4 239 61.1
Cc02_g33950 Coffea canephora HOM05D008075 ORTHO05D010208 3.5e-69 268.1 268 57.1
ATR0171G010 Amborella trichopoda HOM05D008075 ORTHO05D010208 3.0e-68 265.0 254 60.2
QL10p040186 Quercus lobata HOM05D008075 ORTHO05D010208 3.9e-68 264.6 209 65.6
Potri.004G140000 Populus trichocarpa HOM05D008075 ORTHO05D010208 9.6e-67 260.0 288 52.4
Sabra04G0092100 Salix brachista HOM05D008075 ORTHO05D010208 6.2e-66 257.3 414 43.0
Os03g0703300 Oryza sativa ssp. japonica HOM05D008075 ORTHO05D010208 3.1e-65 255.0 239 58.6
Glyma.05G197100 Glycine max HOM05D008075 ORTHO05D010208 3.4e-64 251.5 234 59.0
Nitab4.5_0005586g0040 Nicotiana tabacum HOM05D008075 ORTHO05D010208 2.2e-63 248.8 308 49.7
TWI75G0788 Tripterygium wilfordii HOM05D008075 ORTHO05D010208 6.5e-63 247.3 247 55.1
Peaxi162Scf00658g00065 Petunia axillaris HOM05D008075 ORTHO05D010208 2.5e-62 245.4 213 60.1
Sc09g0004370 Simmondsia chinensis HOM05D008075 ORTHO05D010208 4.2e-62 244.6 236 57.2
Solyc08g080000.3 Solanum lycopersicum HOM05D008075 ORTHO05D010208 7.1e-62 243.8 219 59.4
Migut.H00807 Erythranthe guttata HOM05D008075 ORTHO05D010208 2.1e-61 242.3 260 55.8
Zm00001eb054280 Zea mays HOM05D008075 ORTHO05D010208 2.7e-61 241.9 214 60.3
THA.LOC104819473 Tarenaya hassleriana HOM05D008075 ORTHO05D010208 4.6e-61 241.1 230 54.8
Sopen08g028360 Solanum pennellii HOM05D008075 ORTHO05D010208 1.0e-60 240.0 278 50.4
ECA233G5565 Erigeron canadensis HOM05D008075 ORTHO05D010208 1.3e-60 239.6 215 58.6
Ciclev10024878m.g Citrus clementina HOM05D008075 ORTHO05D010208 2.3e-60 238.8 251 54.2
arahy.Tifrunner.gnm1.ann1.F3CBX5 Arachis hypogaea HOM05D008075 ORTHO05D010208 3.9e-60 238.0 261 54.0
Lj4g0013275 Lotus japonicus HOM05D008075 ORTHO05D010208 3.9e-60 238.0 254 53.5
SGA_v2.0_scaffold54G19596 Striga asiatica HOM05D008075 ORTHO05D010208 6.7e-60 237.3 273 52.4
Glyma.08G004500 Glycine max HOM05D008075 ORTHO05D010208 8.7e-60 236.9 234 56.8
PGSC0003DMG400022727 Solanum tuberosum HOM05D008075 ORTHO05D010208 8.7e-60 236.9 219 58.4
TPR.G33422 Trifolium pratense HOM05D008075 ORTHO05D010208 1.9e-59 235.7 229 56.8
Medtr8g095160 Medicago truncatula HOM05D008075 ORTHO05D010208 3.3e-59 235.0 217 58.5
HanXRQChr15g0468991 Helianthus annuus HOM05D008075 ORTHO05D010208 4.3e-59 234.6 217 56.2
Manes.12G084200 Manihot esculenta HOM05D008075 ORTHO05D010208 4.3e-59 234.6 266 51.9
VMungo0251G2353 Vigna mungo HOM05D008075 ORTHO05D010208 7.4e-59 233.8 184 65.8
Lsat_1_v5_gn_5_69300 Lactuca sativa HOM05D008075 ORTHO05D010208 3.7e-58 231.5 218 56.9
Nn5g27981 Nelumbo nucifera HOM05D008075 ORTHO05D010208 4.8e-58 231.1 153 78.4
arahy.Tifrunner.gnm1.ann1.BIR6X5 Arachis hypogaea HOM05D008075 ORTHO05D010208 4.1e-57 228.0 286 49.7
Psat7g041720 Pisum sativum HOM05D008075 ORTHO05D010208 1.7e-55 222.6 245 52.2
Nitab4.5_0000947g0070 Nicotiana tabacum HOM05D008075 ORTHO05D010208 2.9e-55 221.9 222 57.2
Phvul.002G277500 Phaseolus vulgaris HOM05D008075 ORTHO05D010208 2.9e-55 221.9 189 60.8
Ca_17596_v3 Cicer arietinum L. HOM05D000484 ORTHO05D010208 7.2e-54 217.2 222 55.0
Hund06889 Selenicereus undatus HOM05D008075 ORTHO05D010208 2.7e-53 215.3 216 55.1
EL10Ac4g08956 Beta vulgaris HOM05D008075 ORTHO05D010208 1.8e-52 212.6 233 51.1
AUR62039042 Chenopodium quinoa HOM05D008075 ORTHO05D010208 6.7e-52 210.7 278 46.0
SalBow1G7185 Salvia bowleyana HOM05D008075 ORTHO05D010208 3.3e-51 208.4 257 50.2
Lalb_Chr12g0202841 Lupinus albus HOM05D008075 ORTHO05D010208 3.4e-48 198.4 225 49.8
Ah.06g191710 Amaranthus hybridus HOM05D008075 ORTHO05D010208 1.0e-47 196.8 215 49.8
SEGI_31365 Sequoiadendron giganteum HOM05D008075 ORTHO05D010208 1.7e-42 179.5 278 42.1
AUR62004796 Chenopodium quinoa HOM05D008075 ORTHO05D010208 1.7e-39 169.5 263 42.2
CAN.G630.6 Capsicum annuum HOM05D008075 ORTHO05D010208 6.1e-37 161.0 159 56.0
SMO266G0073 Selaginella moellendorffii HOM05D008075 ORTHO05D010208 9.7e-35 153.7 184 47.8
Mapoly0089s0038 Marchantia polymorpha HOM05D008075 ORTHO05D010208 3.6e-29 135.2 163 42.9
Pp3c16_21630 Physcomitrium patens HOM05D008075 ORTHO05D010208 8.8e-28 130.6 181 42.0
Pp3c6_3110 Physcomitrium patens HOM05D008075 ORTHO05D010208 7.5e-27 127.5 260 33.5
Pp3c6_900 Physcomitrium patens HOM05D008075 ORTHO05D010208 3.8e-23 115.2 174 40.2
Pp3c6_920 Physcomitrium patens HOM05D008075 ORTHO05D010208 3.8e-23 115.2 174 40.2
Nn5g28099 Nelumbo nucifera HOM05D004492 ORTHO05D005602 2.7e-16 92.4 177 41.2
CBR_g31168 Chara braunii HOM05D008075 ORTHO05D010208 1.1e-14 87.0 141 33.3
VMungo0251G2339 Vigna mungo HOM05D008075 ORTHO05D010208 1.0e-12 80.5 74 56.8
AagrBONN_evm.TU.Sc2ySwM_362.1056 Anthoceros agrestis HOM05D008075 ORTHO05D010208 2.8e-10 72.4 143 32.2
CBR_g10951 Chara braunii HOM05D008075 ORTHO05D010208 2.8e-10 72.4 132 28.8
HanXRQChr07g0199571 Helianthus annuus HOM05D008075 ORTHO05D010208 5.4e-09 68.2 47 70.2
HanXRQChr10g0307451 Helianthus annuus HOM05D008075 ORTHO05D010208 3.8e-07 62.0 48 62.5
MSTRG.23496 Avicennia marina HOM05D008075 ORTHO05D010208 2.5e-06 59.3 70 50.0


User provided reference genes

Program Settings