Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 1.2e-136 490.0 262 100.0
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 2.6e-104 382.5 310 69.4
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.7e-103 379.8 310 69.4
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 8.4e-103 377.5 262 76.7
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 9.3e-102 374.0 309 68.6
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 8.7e-100 367.5 310 67.4
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 1.5e-99 366.7 317 67.2
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 1.5e-99 366.7 317 67.2
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 2.5e-99 365.9 310 67.1
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 5.7e-99 364.8 318 66.7
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 1.3e-98 363.6 310 67.7
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.6e-98 363.2 310 67.1
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 2.2e-98 362.8 318 66.4
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 6.3e-98 361.3 312 67.0
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 1.8e-97 359.8 310 67.1
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 6.9e-97 357.8 310 65.5
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 9.0e-97 357.5 310 65.5
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 1.5e-96 356.7 318 67.0
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 5.9e-96 354.8 310 65.8
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 5.9e-96 354.8 309 66.3
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 1.0e-95 354.0 310 65.2
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 1.0e-95 354.0 318 65.7
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 1.3e-95 353.6 310 65.2
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 1.3e-95 353.6 310 65.8
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 1.3e-95 353.6 310 65.5
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 2.2e-95 352.8 310 64.5
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 2.2e-95 352.8 310 65.8
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 2.2e-95 352.8 309 66.0
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 2.9e-95 352.4 312 66.0
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 3.8e-95 352.1 310 64.8
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 3.8e-95 352.1 311 64.0
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 8.5e-95 350.9 311 65.3
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 1.1e-94 350.5 310 64.8
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 1.4e-94 350.1 318 65.4
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 3.2e-94 349.0 310 63.9
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 9.4e-94 347.4 318 64.8
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 9.4e-94 347.4 310 65.5
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.6e-93 346.7 318 64.8
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 2.1e-93 346.3 319 63.6
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 2.1e-93 346.3 310 65.2
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 2.1e-93 346.3 310 63.2
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 2.7e-93 345.9 311 63.3
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 3.6e-93 345.5 310 64.2
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 4.6e-93 345.1 310 63.9
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 7.9e-93 344.4 319 64.6
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 1.0e-92 344.0 318 64.2
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 1.0e-92 344.0 311 63.7
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.4e-92 343.6 310 64.2
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.4e-92 343.6 318 64.2
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 3.0e-92 342.4 310 63.5
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 3.0e-92 342.4 318 64.2
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 3.9e-92 342.0 318 64.2
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 5.1e-92 341.7 318 64.2
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 6.7e-92 341.3 310 63.2
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 1.1e-91 340.5 309 63.4
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 2.0e-91 339.7 309 64.1
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 2.5e-91 339.3 304 63.2
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 2.5e-91 339.3 310 63.2
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 3.3e-91 339.0 311 62.4
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 3.3e-91 339.0 309 63.1
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 3.3e-91 339.0 309 63.4
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 3.3e-91 339.0 311 64.3
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 5.7e-91 338.2 310 62.6
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 2.2e-90 336.3 311 63.7
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 2.8e-90 335.9 319 61.1
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 2.8e-90 335.9 310 61.3
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 3.7e-90 335.5 310 61.3
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 4.8e-90 335.1 318 61.3
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 4.8e-90 335.1 316 61.7
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 6.3e-90 334.7 318 61.9
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 8.2e-90 334.3 309 62.5
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 1.1e-89 334.0 311 61.7
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 1.8e-89 333.2 318 61.3
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 3.1e-89 332.4 318 60.7
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 5.3e-89 331.6 310 61.6
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 6.9e-89 331.3 296 63.9
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 6.9e-89 331.3 310 62.3
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 6.9e-89 331.3 362 56.1
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 1.5e-88 330.1 310 61.3
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 2.0e-88 329.7 310 60.6
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 2.6e-88 329.3 311 60.8
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 4.5e-88 328.6 310 61.6
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 4.5e-88 328.6 309 60.8
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 1.0e-87 327.4 318 60.4
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 1.3e-87 327.0 310 60.3
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.3e-87 327.0 310 60.6
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 5.0e-87 325.1 310 61.0
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 3.2e-86 322.4 312 59.6
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 1.8e-84 316.6 307 60.6
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 1.8e-84 316.6 313 61.3
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 1.8e-84 316.6 313 61.3
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 2.0e-83 313.2 317 58.0
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 7.4e-83 311.2 316 57.9
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.3e-82 310.5 316 57.9
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.7e-82 308.9 345 53.9
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 1.2e-80 303.9 294 59.9
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 5.9e-80 301.6 294 59.5
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 5.9e-80 301.6 285 62.1
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 7.7e-80 301.2 294 59.2
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 1.3e-79 300.4 297 59.3
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 1.7e-79 300.1 277 62.5
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 5.0e-79 298.5 312 58.0
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 7.2e-78 294.7 321 54.8
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 6.1e-77 291.6 281 62.6
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 6.7e-76 288.1 313 55.6
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 1.5e-75 287.0 279 60.6
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.0e-75 286.6 319 57.7
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 4.4e-75 285.4 286 58.0
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 9.7e-75 284.3 286 57.7
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 1.4e-73 280.4 314 52.5
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 7.0e-73 278.1 262 61.5
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 1.3e-71 273.9 314 54.5
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 6.5e-71 271.6 262 59.5
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 3.2e-70 269.2 265 62.3
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 5.5e-70 268.5 271 59.4
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 4.7e-69 265.4 310 53.2
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 1.8e-68 263.5 173 83.2
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 6.8e-68 261.5 276 56.5
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.5e-67 260.4 256 59.4
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 1.8e-65 253.4 256 59.8
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 2.0e-64 250.0 262 55.7
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 3.6e-61 239.2 235 59.6
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 4.0e-60 235.7 179 75.4
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 1.7e-55 220.3 318 44.7
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 2.3e-55 219.9 242 56.2
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 5.5e-54 215.3 346 45.1
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 2.8e-53 213.0 218 59.6
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 4.7e-53 212.2 303 45.9
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 8.0e-53 211.5 221 55.7
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 1.8e-49 200.3 316 40.2
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 2.7e-48 196.4 182 63.7
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 6.6e-47 191.8 157 68.2
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.4e-44 184.1 121 84.3
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 6.8e-44 181.8 146 71.9
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 4.9e-42 175.6 120 82.5
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 1.4e-41 174.1 290 40.0
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 5.0e-39 165.6 219 51.6
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 6.8e-36 155.2 140 65.7
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 7.3e-30 135.2 90 76.7
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 2.3e-28 130.2 128 61.7
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.4e-25 120.2 154 52.6
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 3.2e-25 119.8 112 61.6
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 1.2e-24 117.9 261 34.1
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 2.7e-24 116.7 119 54.6
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 5.1e-23 112.5 86 73.3
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 5.1e-23 112.5 196 41.3
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 7.3e-22 108.6 89 59.6
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 8.9e-20 101.7 300 29.3
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 2.1e-16 90.5 58 81.0
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 2.3e-15 87.0 123 45.5
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 3.3e-14 83.2 57 73.7
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 2.4e-09 67.0 104 38.5
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 4.2e-09 66.2 87 47.1


User provided reference genes

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