Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g27969 Nelumbo nucifera HOM05D000535 ORTHO05D000427 5.5e-110 401.0 203 100.0
Nn3g18575 Nelumbo nucifera HOM05D000535 ORTHO05D000427 2.2e-82 309.3 241 71.0
Nn5g28809 Nelumbo nucifera HOM05D000535 ORTHO05D000427 6.6e-79 297.7 241 69.3
TAR629G0853 Trochodendron aralioides HOM05D000535 ORTHO05D000427 3.4e-43 179.1 247 47.8
Nn3g18980 Nelumbo nucifera HOM05D000535 ORTHO05D000427 6.4e-42 174.9 129 69.0
Nn5g28810 Nelumbo nucifera HOM05D000535 ORTHO05D000427 7.9e-40 167.9 129 67.4
Nn3g18117 Nelumbo nucifera HOM05D000535 ORTHO05D000427 2.5e-33 146.4 235 39.6
Nn6g34814 Nelumbo nucifera HOM05D000535 ORTHO05D000427 9.3e-33 144.4 235 40.0
Nn3g18120 Nelumbo nucifera HOM05D000535 ORTHO05D000427 4.6e-32 142.1 232 40.5
Nn4g23055 Nelumbo nucifera HOM05D000535 ORTHO05D000427 6.0e-32 141.7 238 38.7
Nn3g18118 Nelumbo nucifera HOM05D000535 ORTHO05D000427 1.3e-31 140.6 233 39.1
Nn4g23054 Nelumbo nucifera HOM05D000535 ORTHO05D000427 1.1e-30 137.5 238 38.7
Nn2g13123 Nelumbo nucifera HOM05D000535 ORTHO05D000427 5.7e-30 135.2 237 41.4
Nn3g18577 Nelumbo nucifera HOM05D000535 ORTHO05D000427 4.8e-29 132.1 139 60.4
Nn3g18116 Nelumbo nucifera HOM05D000535 ORTHO05D000427 4.5e-27 125.6 238 36.1
Nn1g09445 Nelumbo nucifera HOM05D000535 ORTHO05D000427 4.1e-20 102.4 233 34.8
MBI03_g13456_MAGBIO Magnolia biondii HOM05D000535 ORTHO05D000427 5.3e-12 75.5 102 41.2
Dinv08278 Davidia involucrata HOM05D000535 ORTHO05D000427 9.1e-12 74.7 204 30.9
MSTRG.11561 Avicennia marina HOM05D000535 ORTHO05D000427 3.4e-11 72.8 207 29.0
Lj6P734T41 Lonicera japonica HOM05D000535 ORTHO05D000427 1.0e-10 71.2 159 30.8
ClCG01G014760 Citrullus lanatus HOM05D000535 ORTHO05D000427 2.2e-10 70.1 213 29.1
Lj2P607T10 Lonicera japonica HOM05D000535 ORTHO05D000427 2.2e-10 70.1 212 29.7
CSS0047130 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 2.9e-10 69.7 214 29.4
TAR374G0418 Trochodendron aralioides HOM05D000535 ORTHO05D000427 2.9e-10 69.7 220 28.2
TAR374G0927 Trochodendron aralioides HOM05D000535 ORTHO05D000427 2.9e-10 69.7 220 27.7
HanXRQChr16g0527271 Helianthus annuus HOM05D000535 ORTHO05D000427 6.5e-10 68.6 218 27.5
TWI15G1241 Tripterygium wilfordii HOM05D000535 ORTHO05D000427 1.1e-09 67.8 180 27.2
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 1.4e-09 67.4 205 28.3
DCAR_023555 Daucus carota HOM05D000535 ORTHO05D000427 1.9e-09 67.0 177 32.8
Sabra04G0045700 Salix brachista HOM05D000535 ORTHO05D000427 1.9e-09 67.0 211 28.9
TWI12G0051 Tripterygium wilfordii HOM05D000535 ORTHO05D000427 2.5e-09 66.6 181 28.2
SalBow3G2587 Salvia bowleyana HOM05D000535 ORTHO05D000427 3.2e-09 66.2 215 30.2
Ciclev10024002m.g Citrus clementina HOM05D000535 ORTHO05D000427 4.2e-09 65.9 224 26.8
MELO3C002177.2 Cucumis melo HOM05D000535 ORTHO05D000427 4.2e-09 65.9 207 27.1
Potri.004G067900 Populus trichocarpa HOM05D000535 ORTHO05D000427 4.2e-09 65.9 204 29.9
CSS0015346 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 5.5e-09 65.5 211 28.9
MELO3C002175.2 Cucumis melo HOM05D000535 ORTHO05D000427 5.5e-09 65.5 210 25.2
CSS0038986 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 7.2e-09 65.1 205 28.8
ECA234G1726 Erigeron canadensis HOM05D000535 ORTHO05D000427 7.2e-09 65.1 231 29.0
Migut.O00272 Erythranthe guttata HOM05D000535 ORTHO05D000427 7.2e-09 65.1 218 28.0
Gorai.011G254900 Gossypium raimondii HOM05D000535 ORTHO05D000427 1.6e-08 63.9 218 24.8
Oeu057516.1 Olea europaea HOM05D000535 ORTHO05D000427 1.6e-08 63.9 201 27.4
QL10p033926 Quercus lobata HOM05D000535 ORTHO05D000427 1.6e-08 63.9 170 28.8
TWI32G0636 Tripterygium wilfordii HOM05D000535 ORTHO05D000427 1.6e-08 63.9 208 26.9
Dinv04609 Davidia involucrata HOM05D000535 ORTHO05D000427 2.1e-08 63.5 184 28.3
TWI15G0556 Tripterygium wilfordii HOM05D000535 ORTHO05D000427 2.1e-08 63.5 181 27.6
CsaV3_1G007570 Cucumis sativus L. HOM05D000535 ORTHO05D000427 2.7e-08 63.2 183 27.9
TAR629G0176 Trochodendron aralioides HOM05D000535 ORTHO05D000427 2.7e-08 63.2 195 30.3
Lju170C18T0 Lonicera japonica HOM05D000535 ORTHO05D000427 3.6e-08 62.8 205 28.8
MBI06_g27485_MAGBIO Magnolia biondii HOM05D000535 ORTHO05D000427 3.6e-08 62.8 179 27.4
Thecc.05G197900 Theobroma cacao HOM05D000535 ORTHO05D000427 3.6e-08 62.8 197 26.9
Ciclev10022276m.g Citrus clementina HOM05D000535 ORTHO05D000427 4.7e-08 62.4 202 24.3
Haze_18412 Corylus avellana HOM05D000535 ORTHO05D000427 4.7e-08 62.4 181 27.6
GSVIVG01012920001 Vitis vinifera HOM05D000535 ORTHO05D000427 4.7e-08 62.4 218 24.8
CAN.G929.11 Capsicum annuum HOM05D000535 ORTHO05D000427 6.1e-08 62.0 185 27.6
Solyc03g020010.1 Solanum lycopersicum HOM05D000535 ORTHO05D000427 6.1e-08 62.0 200 27.5
Aqoxy3G04312 Aquilegia oxysepala HOM05D000535 ORTHO05D000427 7.9e-08 61.6 168 27.4
Cfa017803 Carpinus fangiana HOM05D000535 ORTHO05D000427 7.9e-08 61.6 182 27.5
Ciclev10022211m.g Citrus clementina HOM05D000535 ORTHO05D000427 7.9e-08 61.6 220 25.0
Gohir.A10G214900 Gossypium hirsutum HOM05D000535 ORTHO05D000427 7.9e-08 61.6 218 27.1
MBI03_g13457_MAGBIO Magnolia biondii HOM05D000535 ORTHO05D000427 7.9e-08 61.6 161 29.8
Atru.chr10.1154 Acer truncatum HOM05D000535 ORTHO05D000427 1.0e-07 61.2 216 27.3
DCAR_011413 Daucus carota HOM05D000535 ORTHO05D000427 1.0e-07 61.2 218 25.7
CAN.G74.22 Capsicum annuum HOM05D000535 ORTHO05D000427 1.4e-07 60.8 223 27.4
Cc04_g08380 Coffea canephora HOM05D000535 ORTHO05D000427 1.4e-07 60.8 201 25.9
DCAR_011411 Daucus carota HOM05D000535 ORTHO05D000427 1.4e-07 60.8 182 27.5
Glyma.16G212200 Glycine max HOM05D000535 ORTHO05D000427 1.4e-07 60.8 194 29.9
Sabra04G0045500 Salix brachista HOM05D000535 ORTHO05D000427 1.4e-07 60.8 123 33.3
PGSC0003DMG400015219 Solanum tuberosum HOM05D000535 ORTHO05D000427 1.4e-07 60.8 205 27.3
Prupe.5G074500 Prunus persica HOM05D000535 ORTHO05D000427 1.8e-07 60.5 170 26.5
CSS0016167 Camellia sinensis var. sinensis HOM05D000535 ORTHO05D000427 2.3e-07 60.1 200 27.5
Cc00_g21930 Coffea canephora HOM05D000535 ORTHO05D000427 2.3e-07 60.1 165 29.1
PGR142G1324 Punica granatum HOM05D000535 ORTHO05D000427 2.3e-07 60.1 185 26.5
Ciclev10023257m.g Citrus clementina HOM05D000535 ORTHO05D000427 3.0e-07 59.7 202 24.3
Cc04_g08410 Coffea canephora HOM05D000535 ORTHO05D000427 3.0e-07 59.7 210 25.7
Duzib268G0986 Durio zibethinus HOM05D000535 ORTHO05D000427 3.0e-07 59.7 190 27.9
Sopen03g029620 Solanum pennellii HOM05D000535 ORTHO05D000427 3.0e-07 59.7 204 26.5
THA.LOC104812195 Tarenaya hassleriana HOM05D000535 ORTHO05D000427 3.0e-07 59.7 194 25.3
DCAR_026808 Daucus carota HOM05D000535 ORTHO05D000427 3.9e-07 59.3 202 27.7
Nitab4.5_0002771g0010 Nicotiana tabacum HOM05D000535 ORTHO05D000427 3.9e-07 59.3 170 26.5
Nitab4.5_0012105g0010 Nicotiana tabacum HOM05D000535 ORTHO05D000427 3.9e-07 59.3 201 28.4
Potri.004G067800 Populus trichocarpa HOM05D000535 ORTHO05D000427 3.9e-07 59.3 215 26.0
Prupe.5G074400 Prunus persica HOM05D000535 ORTHO05D000427 3.9e-07 59.3 180 24.4
CAN.G65.71 Capsicum annuum HOM05D000535 ORTHO05D000427 5.1e-07 58.9 204 26.5
Ciclev10022284m.g Citrus clementina HOM05D000535 ORTHO05D000427 5.1e-07 58.9 202 23.8
Ciclev10023572m.g Citrus clementina HOM05D000535 ORTHO05D000427 5.1e-07 58.9 202 23.3
MELO3C002176.2 Cucumis melo HOM05D000535 ORTHO05D000427 5.1e-07 58.9 213 28.2
MSTRG.11531 Avicennia marina HOM05D000535 ORTHO05D000427 6.7e-07 58.5 210 28.6
AUR62005780 Chenopodium quinoa HOM05D000535 ORTHO05D000427 6.7e-07 58.5 202 26.2
Gohir.A10G215064 Gossypium hirsutum HOM05D000535 ORTHO05D000427 6.7e-07 58.5 220 25.0
Sopen06g028550 Solanum pennellii HOM05D000535 ORTHO05D000427 6.7e-07 58.5 196 29.1
Ciclev10022282m.g Citrus clementina HOM05D000535 ORTHO05D000427 8.8e-07 58.2 202 23.8
Ciclev10023371m.g Citrus clementina HOM05D000535 ORTHO05D000427 8.8e-07 58.2 202 23.8
FAN13G2343 Fragaria x ananassa HOM05D000535 ORTHO05D000427 8.8e-07 58.2 182 26.9
Lju170C17T0 Lonicera japonica HOM05D000535 ORTHO05D000427 8.8e-07 58.2 201 28.9
CAN.G861.36 Capsicum annuum HOM05D000535 ORTHO05D000427 1.1e-06 57.8 206 27.2
CAN.G861.38 Capsicum annuum HOM05D000535 ORTHO05D000427 1.1e-06 57.8 211 25.6
Cc02_g29530 Coffea canephora HOM05D000535 ORTHO05D000427 1.1e-06 57.8 211 27.0
FvH4_5g18500 Fragaria vesca HOM05D000535 ORTHO05D000427 1.1e-06 57.8 188 25.5
Gohir.D10G223800 Gossypium hirsutum HOM05D000535 ORTHO05D000427 1.1e-06 57.8 219 25.1
Gohir.D10G224000 Gossypium hirsutum HOM05D000535 ORTHO05D000427 1.1e-06 57.8 216 24.1
Sed0020580 Sechium edule HOM05D000535 ORTHO05D000427 1.1e-06 57.8 210 26.2
Ciclev10021858m.g Citrus clementina HOM05D000535 ORTHO05D000427 1.5e-06 57.4 212 25.9
Duzib205G1520 Durio zibethinus HOM05D000535 ORTHO05D000427 1.5e-06 57.4 190 28.9
Gohir.D10G223900 Gossypium hirsutum HOM05D000535 ORTHO05D000427 1.5e-06 57.4 218 23.4
Gohir.A05G392100 Gossypium hirsutum HOM05D000535 ORTHO05D000427 2.0e-06 57.0 198 27.3
Lj9C411T7 Lonicera japonica HOM05D000535 ORTHO05D000427 2.0e-06 57.0 194 27.8
Lju170C15T10 Lonicera japonica HOM05D000535 ORTHO05D000427 2.0e-06 57.0 214 27.6
Nitab4.5_0007717g0030 Nicotiana tabacum HOM05D000535 ORTHO05D010923 2.0e-06 57.0 160 25.0
Ciclev10023320m.g Citrus clementina HOM05D000535 ORTHO05D000427 2.6e-06 56.6 202 23.3
Duzib268G0791 Durio zibethinus HOM05D000535 ORTHO05D000427 2.6e-06 56.6 216 25.5
Gohir.D04G025000 Gossypium hirsutum HOM05D000535 ORTHO05D000427 2.6e-06 56.6 198 27.3
Gorai.012G027600 Gossypium raimondii HOM05D000535 ORTHO05D000427 2.6e-06 56.6 198 27.3
Nitab4.5_0000477g0200 Nicotiana tabacum HOM05D000535 ORTHO05D000427 2.6e-06 56.6 195 26.7
AT1G17860 Arabidopsis thaliana HOM05D000535 ORTHO05D000427 3.3e-06 56.2 193 25.4
FvH4_5g18510 Fragaria vesca HOM05D000535 ORTHO05D000427 3.3e-06 56.2 182 26.4
FAN04G0905 Fragaria x ananassa HOM05D002264 ORTHO05D002413 3.3e-06 56.2 183 25.7
FAN18G1447 Fragaria x ananassa HOM05D002264 ORTHO05D000427 3.3e-06 56.2 182 26.9
VMungo0464G1451 Vigna mungo HOM05D000535 ORTHO05D000427 3.3e-06 56.2 190 25.8
CiPaw.16G075200 Carya illinoinensis HOM05D000535 ORTHO05D000427 4.4e-06 55.8 170 27.6
Glyma.09G162700 Glycine max HOM05D000535 ORTHO05D000427 4.4e-06 55.8 190 27.9
PGSC0003DMG400027052 Solanum tuberosum HOM05D000535 ORTHO05D000427 4.4e-06 55.8 197 28.9
Peaxi162Scf00643g00538 Petunia axillaris HOM05D000535 ORTHO05D000427 5.7e-06 55.5 169 26.0
Cc00_g23760 Coffea canephora HOM05D000535 ORTHO05D000427 7.4e-06 55.1 201 26.9
Cc04_g08330 Coffea canephora HOM05D000535 ORTHO05D000427 7.4e-06 55.1 191 24.1
Eucgr.L01961 Eucalyptus grandis HOM05D000535 ORTHO05D000427 7.4e-06 55.1 197 26.9
FAN08G0118 Fragaria x ananassa HOM05D000535 ORTHO05D000427 7.4e-06 55.1 187 25.1
PSO782G5179 Papaver somniferum HOM05D000535 ORTHO05D000427 7.4e-06 55.1 206 27.2
PGSC0003DMG400027053 Solanum tuberosum HOM05D000535 ORTHO05D000427 7.4e-06 55.1 173 27.2
arahy.Tifrunner.gnm1.ann1.20IV4T Arachis hypogaea HOM05D000535 ORTHO05D000427 9.7e-06 54.7 172 28.5
Ciclev10022156m.g Citrus clementina HOM05D000535 ORTHO05D000427 9.7e-06 54.7 222 25.2
Lju170C20T6 Lonicera japonica HOM05D000535 ORTHO05D000427 9.7e-06 54.7 210 28.6
Medtr7g037410 Medicago truncatula HOM05D000535 ORTHO05D000427 9.7e-06 54.7 201 24.9
Sp1g15940 Schrenkiella parvula HOM05D000535 ORTHO05D000427 9.7e-06 54.7 166 26.5


User provided reference genes

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