Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g27934 Nelumbo nucifera HOM05D008117 ORTHO05D010265 1.7e-42 175.6 89 100.0
ClCG08G010860 Citrullus lanatus HOM05D008117 ORTHO05D010265 1.7e-23 112.5 93 64.5
CsaV3_6G035660 Cucumis sativus L. HOM05D008117 ORTHO05D010265 6.5e-23 110.5 92 64.1
Sed0012248 Sechium edule HOM05D008117 ORTHO05D010265 1.2e-21 106.3 93 62.4
QL12p035434 Quercus lobata HOM05D008117 ORTHO05D010265 2.1e-21 105.5 75 68.0
CSS0024149 Camellia sinensis var. sinensis HOM05D008117 ORTHO05D010265 6.1e-21 104.0 75 68.0
CiPaw.05G230200 Carya illinoinensis HOM05D008117 ORTHO05D010265 1.4e-20 102.8 88 60.2
Ciclev10002965m.g Citrus clementina HOM05D008117 ORTHO05D010265 2.3e-20 102.1 93 58.1
arahy.Tifrunner.gnm1.ann1.V815ZK Arachis hypogaea HOM05D008117 ORTHO05D010265 5.2e-20 100.9 81 61.7
arahy.Tifrunner.gnm1.ann1.J5UY3S Arachis hypogaea HOM05D008117 ORTHO05D010265 6.8e-20 100.5 81 60.5
Manes.18G072200 Manihot esculenta HOM05D008117 ORTHO05D010265 6.8e-20 100.5 87 59.8
Lj1g0006954 Lotus japonicus HOM05D008117 ORTHO05D010265 1.5e-19 99.4 81 61.7
Sabra02G0071000 Salix brachista HOM05D008117 ORTHO05D010265 1.5e-19 99.4 84 61.9
MELO3C030294.2 Cucumis melo HOM05D008117 ORTHO05D010265 4.4e-19 97.8 79 67.1
Oeu002001.1 Olea europaea HOM05D008117 ORTHO05D010265 4.4e-19 97.8 87 59.8
vmacro12526 Vaccinium macrocarpon HOM05D008117 ORTHO05D010265 4.4e-19 97.8 87 59.8
Phvul.008G168800 Phaseolus vulgaris HOM05D008117 ORTHO05D010265 7.5e-19 97.1 80 60.0
Rhsim13G0192300 Rhododendron simsii HOM05D008117 ORTHO05D010265 7.5e-19 97.1 85 61.2
MD15G1359700 Malus domestica HOM05D008117 ORTHO05D010265 9.8e-19 96.7 78 57.7
EL10Ac5g11972 Beta vulgaris HOM05D008117 ORTHO05D010265 2.2e-18 95.5 77 62.3
CAN.G61.2 Capsicum annuum HOM05D008117 ORTHO05D010265 2.2e-18 95.5 93 54.8
Glyma.13G084800 Glycine max HOM05D008117 ORTHO05D010265 2.2e-18 95.5 81 61.7
Glyma.14G166600 Glycine max HOM05D008117 ORTHO05D010265 2.2e-18 95.5 78 62.8
Sc23g0000960 Simmondsia chinensis HOM05D008117 ORTHO05D010265 2.2e-18 95.5 79 58.2
Thecc.08G115700 Theobroma cacao HOM05D008117 ORTHO05D010265 2.2e-18 95.5 88 56.8
Prupe.1G507400 Prunus persica HOM05D008117 ORTHO05D010265 2.8e-18 95.1 89 55.1
Psat5g111920 Pisum sativum HOM05D008117 ORTHO05D010265 3.7e-18 94.7 78 61.5
Gohir.A05G231100 Gossypium hirsutum HOM05D008117 ORTHO05D010265 4.8e-18 94.4 87 59.8
Duzib041G0298 Durio zibethinus HOM05D008117 ORTHO05D010265 6.3e-18 94.0 88 56.8
AUR62002978 Chenopodium quinoa HOM05D008117 ORTHO05D010265 1.4e-17 92.8 81 58.0
Medtr5g062750 Medicago truncatula HOM05D008117 ORTHO05D010265 3.1e-17 91.7 71 62.0
FAN08G2903 Fragaria x ananassa HOM05D008117 ORTHO05D010265 4.1e-17 91.3 90 52.2
DCAR_028229 Daucus carota HOM05D008117 ORTHO05D010265 5.4e-17 90.9 72 65.3
Eucgr.F03736 Eucalyptus grandis HOM05D008117 ORTHO05D010265 5.4e-17 90.9 71 66.2
Hund16816 Selenicereus undatus HOM05D008117 ORTHO05D010265 2.0e-16 89.0 71 57.7
Sopen11g008360 Solanum pennellii HOM05D008117 ORTHO05D010265 2.0e-16 89.0 93 54.8
PGSC0003DMG400006546 Solanum tuberosum HOM05D008117 ORTHO05D010265 2.7e-16 88.6 92 55.4
FAN13G1450 Fragaria x ananassa HOM05D008117 ORTHO05D010265 3.5e-16 88.2 80 56.2
Potri.002G090100 Populus trichocarpa HOM05D008117 ORTHO05D010265 3.5e-16 88.2 82 59.8
MSTRG.24141 Avicennia marina HOM05D008117 ORTHO05D010265 4.5e-16 87.8 85 56.5
SGA_v2.0_scaffold25G11087 Striga asiatica HOM05D008117 ORTHO05D010265 5.9e-16 87.4 85 55.3
FvH4_5g38460 Fragaria vesca HOM05D008117 ORTHO05D010265 1.0e-15 86.7 76 57.9
RcHm_v2.0_Chr7g0240501 Rosa chinensis HOM05D008117 ORTHO05D010265 1.7e-15 85.9 79 54.4
Gohir.D05G233600 Gossypium hirsutum HOM05D008117 ORTHO05D010265 2.9e-15 85.1 63 65.1
Gorai.009G241700 Gossypium raimondii HOM05D008117 ORTHO05D010265 2.9e-15 85.1 63 65.1
Lalb_Chr04g0253261 Lupinus albus HOM05D008117 ORTHO05D010265 2.9e-15 85.1 84 53.6
HPP92_011399 Vanilla planifolia HOM05D008117 ORTHO05D010265 5.0e-15 84.3 71 57.7
Potri.005G171000 Populus trichocarpa HOM05D008117 ORTHO05D010265 1.1e-14 83.2 79 58.2
Lsat_1_v5_gn_1_112940 Lactuca sativa HOM05D006309 ORTHO05D007937 1.9e-14 82.4 70 61.4
PGR042G1408 Punica granatum HOM05D008117 ORTHO05D010265 1.9e-14 82.4 81 59.3
EL10Ac1g00048 Beta vulgaris HOM05D008117 ORTHO05D010265 2.5e-14 82.0 69 58.0
FAN04G0767 Fragaria x ananassa HOM05D008117 ORTHO05D010265 5.5e-14 80.9 87 51.7
A01p25940 Brassica napus HOM05D008117 ORTHO05D010265 2.1e-13 79.0 72 55.6
C01p32870 Brassica napus HOM05D008117 ORTHO05D010265 2.1e-13 79.0 73 54.8
CANSAT35G0099 Cannabis sativa HOM05D008117 ORTHO05D010265 2.1e-13 79.0 82 56.1
Thhalv10009847m.g Eutrema salsugineum HOM05D008117 ORTHO05D010265 3.6e-13 78.2 75 53.3
BolC1t03228H Brassica oleracea HOM05D008117 ORTHO05D010265 4.7e-13 77.8 73 53.4
Carub.0001s3375 Capsella rubella HOM05D008117 ORTHO05D010265 1.4e-12 76.3 74 54.1
CARHR035030 Cardamine hirsuta HOM05D008117 ORTHO05D010265 5.2e-12 74.3 84 51.2
Os02g0552400 Oryza sativa ssp. japonica HOM05D008117 ORTHO05D010265 8.9e-12 73.6 74 50.0
AT1G36380 Arabidopsis thaliana HOM05D008117 ORTHO05D010265 1.2e-11 73.2 76 52.6
CDE08G1486 Ceratophyllum demersum HOM05D008117 ORTHO05D010265 1.3e-10 69.7 62 58.1
A05p19980 Brassica napus HOM05D008117 ORTHO05D010265 1.7e-10 69.3 73 52.1
BraA05t20905Z Brassica rapa HOM05D008117 ORTHO05D010265 1.7e-10 69.3 73 52.1
VMungo0647G2241 Vigna mungo HOM05D008117 ORTHO05D010265 1.7e-10 69.3 49 65.3
Zm00001eb227210 Zea mays HOM05D008117 ORTHO05D010265 2.8e-10 68.6 74 45.9
Aa31LG6G9030 Aethionema arabicum HOM05D008117 ORTHO05D010265 8.3e-10 67.0 75 53.3
Zm00001eb243570 Zea mays HOM05D008117 ORTHO05D010265 2.4e-09 65.5 64 50.0
AagrBONN_evm.TU.Sc2ySwM_117.1449 Anthoceros agrestis HOM05D008117 ORTHO05D010265 1.6e-08 62.8 69 44.9
SalBow6G0993 Salvia bowleyana HOM05D008117 ORTHO05D010265 3.9e-07 58.2 47 59.6
SEGI_19848 Sequoiadendron giganteum HOM05D008117 ORTHO05D010265 8.6e-07 57.0 61 55.7
CDE06G1754 Ceratophyllum demersum HOM05D000001 ORTHO05D011242 1.1e-06 56.6 49 61.2


User provided reference genes

Program Settings