Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g27765 Nelumbo nucifera HOM05D007616 ORTHO05D008751 1.9e-122 442.6 234 100.0
Nn1g08457 Nelumbo nucifera HOM05D007616 ORTHO05D008751 1.0e-43 181.0 225 53.8
Potri.004G222800 Populus trichocarpa HOM05D007616 ORTHO05D008751 1.7e-41 173.7 245 51.0
Eucgr.I02753 Eucalyptus grandis HOM05D007616 ORTHO05D008751 3.7e-41 172.6 225 51.6
MSTRG.20315 Avicennia marina HOM05D007616 ORTHO05D008751 4.1e-40 169.1 230 51.3
Gohir.A01G182700 Gossypium hirsutum HOM05D007616 ORTHO05D008751 4.1e-40 169.1 244 49.2
Gohir.D01G173800 Gossypium hirsutum HOM05D007616 ORTHO05D008751 5.3e-40 168.7 243 49.4
Gorai.002G215900 Gossypium raimondii HOM05D007616 ORTHO05D008751 5.3e-40 168.7 243 49.4
Thecc.02G023400 Theobroma cacao HOM05D007616 ORTHO05D008751 2.0e-39 166.8 243 46.9
Duzib132G0975 Durio zibethinus HOM05D007616 ORTHO05D008751 1.0e-38 164.5 247 46.6
Potri.003G009400 Populus trichocarpa HOM05D007616 ORTHO05D008751 3.8e-38 162.5 238 50.0
COL.COLO4_17740 Corchorus olitorius HOM05D007616 ORTHO05D008751 6.5e-38 161.8 244 45.5
Manes.10G119800 Manihot esculenta HOM05D007616 ORTHO05D008751 1.1e-37 161.0 218 50.0
Duzib248G0210 Durio zibethinus HOM05D007616 ORTHO05D008751 1.0e-35 154.5 208 50.5
CiPaw.05G005800 Carya illinoinensis HOM05D007616 ORTHO05D008751 3.0e-35 152.9 224 52.2
QL02p100178 Quercus lobata HOM05D007616 ORTHO05D008751 3.9e-35 152.5 251 44.6
Glyma.12G167600 Glycine max HOM05D007616 ORTHO05D008751 5.2e-35 152.1 217 47.9
Oeu000131.1 Olea europaea HOM05D007616 ORTHO05D008751 5.2e-35 152.1 219 49.8
DCAR_025356 Daucus carota HOM05D007616 ORTHO05D008751 8.8e-35 151.4 237 46.0
Nitab4.5_0002596g0080 Nicotiana tabacum HOM05D007616 ORTHO05D008751 1.1e-34 151.0 262 44.7
FvH4_6g51930 Fragaria vesca HOM05D007616 ORTHO05D008751 2.0e-34 150.2 255 44.7
FAN14G2995 Fragaria x ananassa HOM05D007616 ORTHO05D008751 2.0e-34 150.2 255 44.7
Cc02_g23010 Coffea canephora HOM05D007616 ORTHO05D008751 5.7e-34 148.7 227 47.6
FAN09G2205 Fragaria x ananassa HOM05D007616 ORTHO05D008751 7.4e-34 148.3 253 44.7
Peaxi162Scf00011g00934 Petunia axillaris HOM05D007616 ORTHO05D008751 1.3e-33 147.5 269 45.0
Sabra03G0004800 Salix brachista HOM05D007616 ORTHO05D008751 1.7e-33 147.1 243 46.5
PSO170G4229 Papaver somniferum HOM05D007616 ORTHO05D008751 2.8e-33 146.4 258 43.4
PSO782G2099 Papaver somniferum HOM05D007616 ORTHO05D008751 2.8e-33 146.4 260 42.3
ClCG11G013320 Citrullus lanatus HOM05D007616 ORTHO05D008751 3.7e-33 146.0 222 46.8
Aqoxy6G00124 Aquilegia oxysepala HOM05D007616 ORTHO05D008751 4.8e-33 145.6 215 48.4
arahy.Tifrunner.gnm1.ann1.D7HVAZ Arachis hypogaea HOM05D007616 ORTHO05D008751 1.4e-32 144.1 223 44.8
CSS0021835 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 1.4e-32 144.1 232 44.8
PGSC0003DMG400024897 Solanum tuberosum HOM05D007616 ORTHO05D008751 4.1e-32 142.5 232 47.0
Sed0008181 Sechium edule HOM05D007616 ORTHO05D008751 5.3e-32 142.1 218 46.3
CSS0006253 Camellia sinensis var. sinensis HOM05D007616 ORTHO05D008751 9.1e-32 141.4 236 45.3
arahy.Tifrunner.gnm1.ann1.4HSG2Y Arachis hypogaea HOM05D007616 ORTHO05D008751 1.2e-31 141.0 224 43.8
Atru.chr4.2705 Acer truncatum HOM05D007616 ORTHO05D008751 2.6e-31 139.8 234 44.4
Nitab4.5_0000948g0040 Nicotiana tabacum HOM05D007616 ORTHO05D008751 2.6e-31 139.8 260 43.8
RcHm_v2.0_Chr2g0173411 Rosa chinensis HOM05D007616 ORTHO05D008751 2.6e-31 139.8 257 42.4
Prupe.1G577200 Prunus persica HOM05D007616 ORTHO05D008751 3.5e-31 139.4 254 45.3
Sopen01g046110 Solanum pennellii HOM05D007616 ORTHO05D008751 3.5e-31 139.4 219 47.5
Solyc01g103700.3 Solanum lycopersicum HOM05D007616 ORTHO05D008751 4.5e-31 139.0 226 46.9
Phvul.006G218400 Phaseolus vulgaris HOM05D007616 ORTHO05D008751 5.9e-31 138.7 214 46.3
MD08G1240500 Malus domestica HOM05D007616 ORTHO05D008751 2.2e-30 136.7 245 43.7
Actinidia06472 Actinidia chinensis HOM05D007616 ORTHO05D008751 2.9e-30 136.3 199 47.7
Migut.B00786 Erythranthe guttata HOM05D007616 ORTHO05D008751 8.5e-30 134.8 245 42.9
CiPaw.06G173100 Carya illinoinensis HOM05D007616 ORTHO05D008751 1.1e-29 134.4 218 47.7
Psat1g223480 Pisum sativum HOM05D007616 ORTHO05D008751 1.5e-29 134.0 263 39.5
Lalb_Chr18g0061041 Lupinus albus HOM05D007616 ORTHO05D008751 4.2e-29 132.5 236 40.3
CAN.G798.53 Capsicum annuum HOM05D007616 ORTHO05D008751 1.6e-28 130.6 238 42.4
MELO3C011824.2 Cucumis melo HOM05D007616 ORTHO05D008751 1.6e-28 130.6 202 45.5
Oeu058636.1 Olea europaea HOM05D007616 ORTHO05D008751 1.0e-27 127.9 216 46.8
CANSAT54G0672 Cannabis sativa HOM05D007616 ORTHO05D008751 1.4e-27 127.5 239 42.3
Sabra01G0168700 Salix brachista HOM05D007616 ORTHO05D008751 3.0e-27 126.3 239 41.8
Manes.07G023000 Manihot esculenta HOM05D007616 ORTHO05D008751 6.7e-27 125.2 223 43.5
VMungo0540G1916 Vigna mungo HOM05D007616 ORTHO05D008751 6.7e-27 125.2 213 42.3
TPR.G2142 Trifolium pratense HOM05D007616 ORTHO05D008751 1.5e-26 124.0 231 42.0
Lj6g0028114 Lotus japonicus HOM05D007616 ORTHO05D008751 7.5e-26 121.7 284 36.3
Lsat_1_v5_gn_9_120740 Lactuca sativa HOM05D007616 ORTHO05D008751 8.2e-25 118.2 223 39.9
Sc20g0001190 Simmondsia chinensis HOM05D007616 ORTHO05D008751 8.2e-25 118.2 158 50.6
SGA_v2.0_scaffold272G46374 Striga asiatica HOM05D007616 ORTHO05D008751 8.2e-25 118.2 225 40.4
Medtr2g005910 Medicago truncatula HOM05D007616 ORTHO05D008751 9.1e-24 114.8 202 42.1
Rhsim05G0186200 Rhododendron simsii HOM05D007616 ORTHO05D008751 1.6e-23 114.0 210 41.9
HanXRQChr06g0181301 Helianthus annuus HOM05D007616 ORTHO05D008751 4.5e-23 112.5 233 42.5
MD15G1433700 Malus domestica HOM05D007616 ORTHO05D008751 5.9e-23 112.1 249 39.8
HPP92_005665 Vanilla planifolia HOM05D007616 ORTHO05D008751 5.9e-23 112.1 222 40.5
Ca_00046_v3 Cicer arietinum L. HOM05D001654 ORTHO05D002773 1.7e-22 110.5 138 52.9
ECA236G1993 Erigeron canadensis HOM05D007616 ORTHO05D008751 1.5e-21 107.5 224 43.8
THA.LOC104816807 Tarenaya hassleriana HOM05D007616 ORTHO05D008751 1.9e-21 107.1 252 37.3
AL2G17970 Arabidopsis lyrata HOM05D012662 ORTHO05D008751 2.5e-21 106.7 302 32.8
Potri.019G021000 Populus trichocarpa HOM05D007616 ORTHO05D008751 3.2e-21 106.3 240 40.4
AUR62034500 Chenopodium quinoa HOM05D007616 ORTHO05D008751 1.8e-19 100.5 264 31.8
TAR624G1080 Trochodendron aralioides HOM05D007616 ORTHO05D008751 3.0e-19 99.8 113 54.9
PGR142G0501 Punica granatum HOM05D007616 ORTHO05D008751 4.0e-19 99.4 180 41.7
CsaV3_5G029830 Cucumis sativus L. HOM05D001654 ORTHO05D002773 9.8e-18 94.7 185 43.8
ATR0090G002 Amborella trichopoda HOM05D007616 ORTHO05D008751 2.2e-17 93.6 173 41.0
BcaC02g10705 Brassica carinata HOM05D007616 ORTHO05D008751 3.7e-17 92.8 221 35.7
ECA240G3878 Erigeron canadensis HOM05D007616 ORTHO05D008751 2.4e-16 90.1 243 33.3
AUR62037671 Chenopodium quinoa HOM05D002239 ORTHO05D002408 7.0e-16 88.6 105 53.3
Cfa004508 Carpinus fangiana HOM05D007616 ORTHO05D008751 9.1e-16 88.2 214 37.9
Zm00001eb202050 Zea mays HOM05D007616 ORTHO05D008751 1.3e-14 84.3 262 30.5
Os11g0195800 Oryza sativa ssp. japonica HOM05D007616 ORTHO05D008751 2.9e-14 83.2 268 30.6
Ah.06g187740 Amaranthus hybridus HOM05D007616 ORTHO05D008751 3.8e-14 82.8 121 44.6
GSVIVG01023272001 Vitis vinifera HOM05D007616 ORTHO05D008751 5.0e-14 82.4 236 36.0
unitig_21.g20913 Utricularia gibba HOM05D007616 ORTHO05D008751 1.5e-13 80.9 202 33.7
C01p35720 Brassica napus HOM05D007616 ORTHO05D008751 7.2e-13 78.6 144 40.3
BolC1t03530H Brassica oleracea HOM05D007616 ORTHO05D008751 7.2e-13 78.6 144 40.3
Haze_10065 Corylus avellana HOM05D001654 ORTHO05D002773 9.5e-13 78.2 226 35.0
Hma1.2p1_0427F.1_g150730 Hydrangea macrophylla HOM05D007616 ORTHO05D008751 1.6e-12 77.4 135 48.1
SalBow3G1194 Salvia bowleyana HOM05D007616 ORTHO05D008751 1.6e-12 77.4 231 34.2
Carub.0002s0656 Capsella rubella HOM05D012662 ORTHO05D008751 2.8e-12 76.6 277 28.5
TWI14G0953 Tripterygium wilfordii HOM05D007616 ORTHO05D008751 4.7e-12 75.9 241 32.8
Lsat_1_v5_gn_7_76421 Lactuca sativa HOM05D007616 ORTHO05D008751 2.0e-10 70.5 239 29.3
A09p18580 Brassica napus HOM05D012662 ORTHO05D008751 3.4e-10 69.7 200 33.5
C04p26930 Brassica napus HOM05D007616 ORTHO05D008751 5.7e-10 68.9 132 41.7
BolC4t24105H Brassica oleracea HOM05D007616 ORTHO05D008751 5.7e-10 68.9 132 41.7
vmacro19869 Vaccinium macrocarpon HOM05D007616 ORTHO05D008751 5.7e-10 68.9 90 50.0
Ciclev10002504m.g Citrus clementina HOM05D002661 ORTHO05D002786 1.7e-09 67.4 212 32.1
Dinv07475 Davidia involucrata HOM05D001654 ORTHO05D002773 2.8e-09 66.6 188 35.6
Aqoxy4G02812 Aquilegia oxysepala HOM05D002661 ORTHO05D002786 3.1e-08 63.2 210 29.0
QL02p011493 Quercus lobata HOM05D002661 ORTHO05D002786 3.1e-08 63.2 208 32.7
Sopen02g028700 Solanum pennellii HOM05D002661 ORTHO05D002786 3.1e-08 63.2 225 28.0
Haze_22627 Corylus avellana HOM05D002661 ORTHO05D002786 4.1e-08 62.8 208 31.2
MSTRG.2712 Avicennia marina HOM05D002661 ORTHO05D002786 7.0e-08 62.0 221 29.4
Nitab4.5_0003271g0010 Nicotiana tabacum HOM05D002661 ORTHO05D002786 7.0e-08 62.0 227 26.0
Rhsim05G0130500 Rhododendron simsii HOM05D007616 ORTHO05D008751 1.2e-07 61.2 107 45.8
Actinidia16982 Actinidia chinensis HOM05D002661 ORTHO05D002786 1.6e-07 60.8 123 38.2
Zm00001eb391910 Zea mays HOM05D036147 ORTHO05D008751 1.6e-07 60.8 217 28.1
Sopen03g006340 Solanum pennellii HOM05D002661 ORTHO05D002786 2.0e-07 60.5 214 27.6
vmacro04348 Vaccinium macrocarpon HOM05D002661 ORTHO05D002786 2.0e-07 60.5 199 29.6
Hma1.2p1_1108F.1_g257940 Hydrangea macrophylla HOM05D007616 ORTHO05D008751 3.5e-07 59.7 216 31.0
TAR381G1099 Trochodendron aralioides HOM05D002661 ORTHO05D002786 3.5e-07 59.7 202 31.7
BraA09t37484Z Brassica rapa HOM05D012662 ORTHO05D008751 4.5e-07 59.3 112 38.4
Cfa006970 Carpinus fangiana HOM05D002668 ORTHO05D003295 5.9e-07 58.9 222 28.8
AUR62003372 Chenopodium quinoa HOM05D002661 ORTHO05D002786 5.9e-07 58.9 210 30.0
Duzib041G0251 Durio zibethinus HOM05D002661 ORTHO05D002786 5.9e-07 58.9 209 30.6
Solyc03g033550.3 Solanum lycopersicum HOM05D002661 ORTHO05D002786 5.9e-07 58.9 214 27.6
Nitab4.5_0006119g0020 Nicotiana tabacum HOM05D002661 ORTHO05D002786 7.8e-07 58.5 219 26.0
AUR62029460 Chenopodium quinoa HOM05D002661 ORTHO05D002786 1.0e-06 58.2 217 30.4
PGSC0003DMG400022533 Solanum tuberosum HOM05D002661 ORTHO05D002786 1.0e-06 58.2 214 27.6
Gorai.009G270100 Gossypium raimondii HOM05D002661 ORTHO05D002786 2.9e-06 56.6 212 28.3
Cfa013943 Carpinus fangiana HOM05D002661 ORTHO05D002786 3.8e-06 56.2 224 28.1
Dinv31838 Davidia involucrata HOM05D002661 ORTHO05D002786 3.8e-06 56.2 223 28.3
Gohir.A05G257100 Gossypium hirsutum HOM05D002661 ORTHO05D002786 3.8e-06 56.2 212 28.3
MD08G1013500 Malus domestica HOM05D002661 ORTHO05D002786 5.0e-06 55.8 209 30.1
Nitab4.5_0006286g0080 Nicotiana tabacum HOM05D002661 ORTHO05D002786 5.0e-06 55.8 234 25.2
ATR0481G008 Amborella trichopoda HOM05D002661 ORTHO05D002786 6.6e-06 55.5 236 28.0
COL.COLO4_26155 Corchorus olitorius HOM05D002661 ORTHO05D002786 8.6e-06 55.1 209 28.2


User provided reference genes

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