Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g27369 Nelumbo nucifera HOM05D000554 ORTHO05D000860 3.5e-25 117.5 58 100.0
Aqoxy2G04105 Aquilegia oxysepala HOM05D000554 ORTHO05D000860 1.3e-08 62.4 35 80.0
Duzib151G0837 Durio zibethinus HOM05D000554 ORTHO05D000860 1.7e-08 62.0 33 84.8
Nn1g09599 Nelumbo nucifera HOM05D000554 ORTHO05D000860 2.3e-08 61.6 35 80.0
TAR362G1220 Trochodendron aralioides HOM05D000554 ORTHO05D000860 2.3e-08 61.6 35 80.0
TAR636G3407 Trochodendron aralioides HOM05D000554 ORTHO05D000860 2.3e-08 61.6 35 80.0
Gohir.A02G014600 Gossypium hirsutum HOM05D000554 ORTHO05D000860 5.1e-08 60.5 33 81.8
Gohir.D02G016200 Gossypium hirsutum HOM05D000554 ORTHO05D000860 5.1e-08 60.5 33 81.8
Gorai.005G019700 Gossypium raimondii HOM05D000554 ORTHO05D000860 5.1e-08 60.5 33 81.8
MBI08_g32103_MAGBIO Magnolia biondii HOM05D000554 ORTHO05D000860 5.1e-08 60.5 35 77.1
Potri.007G126900 Populus trichocarpa HOM05D000554 ORTHO05D000860 5.1e-08 60.5 33 81.8
Potri.010G180600 Populus trichocarpa HOM05D000554 ORTHO05D000860 5.1e-08 60.5 34 76.5
TWI18G1328 Tripterygium wilfordii HOM05D000554 ORTHO05D000860 5.1e-08 60.5 35 77.1
GSVIVG01003757001 Vitis vinifera HOM05D000554 ORTHO05D000860 5.1e-08 60.5 35 77.1
Dinv07468 Davidia involucrata HOM05D000554 ORTHO05D000860 6.6e-08 60.1 42 69.0
Dinv22719 Davidia involucrata HOM05D000554 ORTHO05D000860 6.6e-08 60.1 35 77.1
CiPaw.07G085500 Carya illinoinensis HOM05D000554 ORTHO05D000860 8.6e-08 59.7 35 74.3
Haze_04602 Corylus avellana HOM05D000554 ORTHO05D000860 8.6e-08 59.7 35 74.3
Dinv44203 Davidia involucrata HOM05D000554 ORTHO05D000860 8.6e-08 59.7 35 77.1
Manes.04G041500 Manihot esculenta HOM05D000554 ORTHO05D000860 1.1e-07 59.3 35 74.3
Manes.11G118300 Manihot esculenta HOM05D000554 ORTHO05D000860 1.1e-07 59.3 33 78.8
Manes.13G001300 Manihot esculenta HOM05D000554 ORTHO05D000860 1.1e-07 59.3 35 71.4
Sabra07G0103000 Salix brachista HOM05D000554 ORTHO05D000860 1.1e-07 59.3 33 78.8
Thecc.04G184600 Theobroma cacao HOM05D000554 ORTHO05D000860 1.1e-07 59.3 33 81.8
MD04G1248300 Malus domestica HOM05D000554 ORTHO05D000860 1.5e-07 58.9 35 68.6
Prupe.6G364600 Prunus persica HOM05D000554 ORTHO05D000860 1.5e-07 58.9 35 68.6
Actinidia35968 Actinidia chinensis HOM05D000554 ORTHO05D000860 1.9e-07 58.5 35 74.3
Rhsim09G0029200 Rhododendron simsii HOM05D000554 ORTHO05D000860 1.9e-07 58.5 35 74.3
Gohir.D13G099700 Gossypium hirsutum HOM05D000554 ORTHO05D000860 2.5e-07 58.2 34 70.6
Gorai.013G111600 Gossypium raimondii HOM05D000554 ORTHO05D000860 2.5e-07 58.2 34 70.6
MBI11_g40785_MAGBIO Magnolia biondii HOM05D000554 ORTHO05D000860 2.5e-07 58.2 35 74.3
Thecc.05G185100 Theobroma cacao HOM05D000554 ORTHO05D000860 2.5e-07 58.2 35 71.4
vmacro15644 Vaccinium macrocarpon HOM05D000554 ORTHO05D000860 2.5e-07 58.2 33 78.8
GSVIVG01010742001 Vitis vinifera HOM05D000554 ORTHO05D000860 2.5e-07 58.2 33 78.8
CSS0012969 Camellia sinensis var. sinensis HOM05D000554 ORTHO05D000860 3.3e-07 57.8 35 71.4
COL.COLO4_24399 Corchorus olitorius HOM05D000554 ORTHO05D000860 3.3e-07 57.8 35 68.6
Dinv21357 Davidia involucrata HOM05D000554 ORTHO05D000860 3.3e-07 57.8 35 71.4
Dinv29079 Davidia involucrata HOM05D000554 ORTHO05D000860 3.3e-07 57.8 35 71.4
FvH4_6g00130 Fragaria vesca HOM05D000554 ORTHO05D000860 3.3e-07 57.8 35 65.7
FAN09G1701 Fragaria x ananassa HOM05D000554 ORTHO05D000860 3.3e-07 57.8 35 65.7
FAN14G0758 Fragaria x ananassa HOM05D000554 ORTHO05D000860 3.3e-07 57.8 35 65.7
Gohir.A13G087900 Gossypium hirsutum HOM05D000554 ORTHO05D000860 3.3e-07 57.8 34 70.6
MD12G1262400 Malus domestica HOM05D000554 ORTHO05D000860 3.3e-07 57.8 35 68.6
Potri.017G032000 Populus trichocarpa HOM05D000554 ORTHO05D000860 3.3e-07 57.8 33 78.8
RcHm_v2.0_Chr3g0447471 Rosa chinensis HOM05D000554 ORTHO05D000860 3.3e-07 57.8 35 65.7
TWI36G0644 Tripterygium wilfordii HOM05D000554 ORTHO05D000860 3.3e-07 57.8 35 74.3
Actinidia34615 Actinidia chinensis HOM05D000554 ORTHO05D000860 4.3e-07 57.4 34 73.5
ATR0743G035 Amborella trichopoda HOM05D000554 ORTHO05D000860 4.3e-07 57.4 35 68.6
Migut.F01849 Erythranthe guttata HOM05D000554 ORTHO05D000860 4.3e-07 57.4 35 68.6
FAN02G2231 Fragaria x ananassa HOM05D000554 ORTHO05D000860 4.3e-07 57.4 34 67.6
Lj8A198G47 Lonicera japonica HOM05D000554 ORTHO05D000860 4.3e-07 57.4 35 68.6
Nn7g37647 Nelumbo nucifera HOM05D000554 ORTHO05D000860 4.3e-07 57.4 35 74.3
vmacro00609 Vaccinium macrocarpon HOM05D000554 ORTHO05D000860 4.3e-07 57.4 35 71.4
HPP92_004535 Vanilla planifolia HOM05D000554 ORTHO05D000860 4.3e-07 57.4 35 71.4
HPP92_004556 Vanilla planifolia HOM05D000554 ORTHO05D000860 4.3e-07 57.4 35 71.4
Ah.06g195280 Amaranthus hybridus HOM05D000554 ORTHO05D000860 5.6e-07 57.0 35 68.6
EL10Ac4g10019 Beta vulgaris HOM05D000554 ORTHO05D000860 5.6e-07 57.0 35 71.4
CANSAT54G0341 Cannabis sativa HOM05D000554 ORTHO05D000860 5.6e-07 57.0 35 68.6
Cpa.g.sc71.12 Carica papaya HOM05D000554 ORTHO05D000860 5.6e-07 57.0 33 72.7
Cc09_g04050 Coffea canephora HOM05D000554 ORTHO05D000860 5.6e-07 57.0 35 71.4
Potri.008G077100 Populus trichocarpa HOM05D000554 ORTHO05D000860 5.6e-07 57.0 34 70.6
Sabra08G0057500 Salix brachista HOM05D000554 ORTHO05D000860 5.6e-07 57.0 34 70.6
Sc06g0004950 Simmondsia chinensis HOM05D000554 ORTHO05D000860 5.6e-07 57.0 35 71.4
Atru.chr12.1655 Acer truncatum HOM05D000554 ORTHO05D000860 7.3e-07 56.6 35 68.6
Actinidia11306 Actinidia chinensis HOM05D000554 ORTHO05D000860 7.3e-07 56.6 34 70.6
arahy.Tifrunner.gnm1.ann1.4QB72P Arachis hypogaea HOM05D000554 ORTHO05D000860 7.3e-07 56.6 33 75.8
arahy.Tifrunner.gnm1.ann1.66EN6R Arachis hypogaea HOM05D000554 ORTHO05D000860 7.3e-07 56.6 33 75.8
CSS0006355 Camellia sinensis var. sinensis HOM05D000554 ORTHO05D000860 7.3e-07 56.6 35 68.6
CiPaw.01G101900 Carya illinoinensis HOM05D000554 ORTHO05D000860 7.3e-07 56.6 33 75.8
Ciclev10019506m.g Citrus clementina HOM05D000554 ORTHO05D000860 7.3e-07 56.6 33 72.7
Duzib128G0940 Durio zibethinus HOM05D000554 ORTHO05D000860 7.3e-07 56.6 35 68.6
Hma1.2p1_0754F.1_g213090 Hydrangea macrophylla HOM05D000554 ORTHO05D000860 7.3e-07 56.6 34 73.5
PSO017G5494 Papaver somniferum HOM05D000554 ORTHO05D000860 7.3e-07 56.6 34 67.6
PSO675G6654 Papaver somniferum HOM05D000554 ORTHO05D000860 7.3e-07 56.6 34 67.6
Actinidia39856 Actinidia chinensis HOM05D000554 ORTHO05D000860 9.5e-07 56.2 35 71.4
AL4G26770 Arabidopsis lyrata HOM05D000554 ORTHO05D000860 9.5e-07 56.2 34 70.6
BcaB01g04041 Brassica carinata HOM05D000554 ORTHO05D000860 9.5e-07 56.2 34 70.6
BcaC01g05948 Brassica carinata HOM05D000554 ORTHO05D000860 9.5e-07 56.2 34 70.6
BcaC02g07994 Brassica carinata HOM05D000554 ORTHO05D000860 9.5e-07 56.2 34 73.5
C03p20750 Brassica napus HOM05D000554 ORTHO05D000860 9.5e-07 56.2 34 70.6
BolC3t14448H Brassica oleracea HOM05D000554 ORTHO05D000860 9.5e-07 56.2 34 70.6
Cpa.g.sc99.47 Carica papaya HOM05D000554 ORTHO05D000860 9.5e-07 56.2 35 65.7
Migut.F02095 Erythranthe guttata HOM05D000554 ORTHO05D000860 9.5e-07 56.2 35 65.7
Hma1.2p1_0324F.1_g125320 Hydrangea macrophylla HOM05D000554 ORTHO05D000860 9.5e-07 56.2 35 68.6
Sp4g13970 Schrenkiella parvula HOM05D000554 ORTHO05D000860 9.5e-07 56.2 34 70.6
Zm00001eb078850 Zea mays HOM05D000554 ORTHO05D000860 9.5e-07 56.2 35 71.4
Actinidia03246 Actinidia chinensis HOM05D000554 ORTHO05D000860 1.2e-06 55.8 35 68.6
C04p60940 Brassica napus HOM05D000554 ORTHO05D000860 1.2e-06 55.8 34 70.6
BolC4t27585H Brassica oleracea HOM05D000554 ORTHO05D000860 1.2e-06 55.8 34 70.6
Cfa015134 Carpinus fangiana HOM05D000554 ORTHO05D000860 1.2e-06 55.8 33 75.8
AUR62000277 Chenopodium quinoa HOM05D000554 ORTHO05D000860 1.2e-06 55.8 35 68.6
AUR62006624 Chenopodium quinoa HOM05D000554 ORTHO05D000860 1.2e-06 55.8 35 68.6
Haze_01537 Corylus avellana HOM05D000554 ORTHO05D000860 1.2e-06 55.8 33 75.8
HanXRQChr16g0511861 Helianthus annuus HOM05D000554 ORTHO05D000860 1.2e-06 55.8 35 65.7
Rhsim02G0076100 Rhododendron simsii HOM05D000554 ORTHO05D000860 1.2e-06 55.8 35 71.4
Sc09g0001360 Simmondsia chinensis HOM05D000554 ORTHO05D000860 1.2e-06 55.8 34 70.6
SGA_v2.0_scaffold62G21492 Striga asiatica HOM05D000554 ORTHO05D000860 1.2e-06 55.8 35 65.7
TAR633G0921 Trochodendron aralioides HOM05D000554 ORTHO05D000860 1.2e-06 55.8 36 75.0
BraA04t17941Z Brassica rapa HOM05D000554 ORTHO05D000860 1.6e-06 55.5 34 70.6
ECA232G4534 Erigeron canadensis HOM05D000554 ORTHO05D000860 1.6e-06 55.5 35 65.7
Thhalv10016456m.g Eutrema salsugineum HOM05D000554 ORTHO05D000860 1.6e-06 55.5 33 69.7
Glyma.13G343300 Glycine max HOM05D000554 ORTHO05D000860 1.6e-06 55.5 33 75.8
Gohir.A11G305100 Gossypium hirsutum HOM05D000554 ORTHO05D000860 1.6e-06 55.5 35 65.7
Lsat_1_v5_gn_0_14601 Lactuca sativa HOM05D000554 ORTHO05D000860 1.6e-06 55.5 34 67.6
Lj3g0001003 Lotus japonicus HOM05D000554 ORTHO05D000860 1.6e-06 55.5 33 75.8
MD13G1275700 Malus domestica HOM05D000554 ORTHO05D000860 1.6e-06 55.5 33 72.7
VMungo1080G1202 Vigna mungo HOM05D000554 ORTHO05D000860 1.6e-06 55.5 33 75.8
MSTRG.9242 Avicennia marina HOM05D000554 ORTHO05D000860 2.1e-06 55.1 35 68.6
A03p17660 Brassica napus HOM05D000554 ORTHO05D000860 2.1e-06 55.1 34 67.6
BraA03t11031Z Brassica rapa HOM05D000554 ORTHO05D000860 2.1e-06 55.1 34 67.6
Ca_01267_v3 Cicer arietinum L. HOM05D000554 ORTHO05D000860 2.1e-06 55.1 33 72.7
Ciclev10012327m.g Citrus clementina HOM05D000554 ORTHO05D000860 2.1e-06 55.1 35 65.7
MELO3C008609.2 Cucumis melo HOM05D000554 ORTHO05D000860 2.1e-06 55.1 35 65.7
CsaV3_2G010310 Cucumis sativus L. HOM05D000554 ORTHO05D000860 2.1e-06 55.1 35 65.7
Eucgr.A00057 Eucalyptus grandis HOM05D000554 ORTHO05D000860 2.1e-06 55.1 33 72.7
Eucgr.A00261 Eucalyptus grandis HOM05D000554 ORTHO05D000860 2.1e-06 55.1 33 72.7
Os04g0492100 Oryza sativa ssp. japonica HOM05D000554 ORTHO05D000860 2.1e-06 55.1 35 68.6
Sed0009108 Sechium edule HOM05D000554 ORTHO05D000860 2.1e-06 55.1 35 65.7
SEGI_00984 Sequoiadendron giganteum HOM05D000554 ORTHO05D000860 2.1e-06 55.1 33 72.7
SEGI_19814 Sequoiadendron giganteum HOM05D000554 ORTHO05D000860 2.1e-06 55.1 35 65.7
THA.LOC104800899 Tarenaya hassleriana HOM05D000554 ORTHO05D000860 2.1e-06 55.1 33 72.7
TWI53G1547 Tripterygium wilfordii HOM05D000554 ORTHO05D000860 2.1e-06 55.1 33 72.7
Atru.chr3.1542 Acer truncatum HOM05D000554 ORTHO05D000860 2.8e-06 54.7 33 75.8
AT2G31510 Arabidopsis thaliana HOM05D000554 ORTHO05D000860 2.8e-06 54.7 34 67.6
BcaNung06829 Brassica carinata HOM05D000554 ORTHO05D000860 2.8e-06 54.7 34 67.6
A04p24210 Brassica napus HOM05D000554 ORTHO05D000860 2.8e-06 54.7 34 67.6
Hma1.2p1_0620F.1_g190550 Hydrangea macrophylla HOM05D000554 ORTHO05D000860 2.8e-06 54.7 35 62.9
Hma1.2p1_2339F.1_g320250 Hydrangea macrophylla HOM05D000554 ORTHO05D000860 2.8e-06 54.7 35 62.9
Rhsim09G0029300 Rhododendron simsii HOM05D000554 ORTHO05D000860 2.8e-06 54.7 35 68.6
Aa31LG5G5410 Aethionema arabicum HOM05D000554 ORTHO05D000860 3.6e-06 54.3 34 67.6
arahy.Tifrunner.gnm1.ann1.LX8RGZ Arachis hypogaea HOM05D000554 ORTHO05D000860 3.6e-06 54.3 33 72.7
arahy.Tifrunner.gnm1.ann1.SGE7CW Arachis hypogaea HOM05D000554 ORTHO05D000860 3.6e-06 54.3 33 72.7
CARHR125160 Cardamine hirsuta HOM05D000554 ORTHO05D000860 3.6e-06 54.3 33 69.7
COL.COLO4_24398 Corchorus olitorius HOM05D000554 ORTHO05D000860 3.6e-06 54.3 33 72.7
Glyma.15G031100 Glycine max HOM05D000554 ORTHO05D000860 3.6e-06 54.3 33 72.7
Gohir.D11G320500 Gossypium hirsutum HOM05D000554 ORTHO05D000860 3.6e-06 54.3 35 62.9
Gorai.007G350700 Gossypium raimondii HOM05D000554 ORTHO05D000860 3.6e-06 54.3 35 62.9
Psat1g007400 Pisum sativum HOM05D000554 ORTHO05D000860 3.6e-06 54.3 33 72.7
SalBow1G1978 Salvia bowleyana HOM05D000554 ORTHO05D000860 3.6e-06 54.3 33 69.7
SalBow1G5688 Salvia bowleyana HOM05D000554 ORTHO05D000860 3.6e-06 54.3 33 69.7
Hund21928 Selenicereus undatus HOM05D000554 ORTHO05D000860 3.6e-06 54.3 35 65.7
TPR.G18853 Trifolium pratense HOM05D000554 ORTHO05D000860 3.6e-06 54.3 33 72.7
TPR.G841 Trifolium pratense HOM05D000554 ORTHO05D000860 3.6e-06 54.3 33 72.7
Carub.0004s1283 Capsella rubella HOM05D000554 ORTHO05D000860 4.7e-06 53.9 33 69.7
CAN.G321.17 Capsicum annuum HOM05D000554 ORTHO05D000860 4.7e-06 53.9 35 60.0
CDE02G3725 Ceratophyllum demersum HOM05D000554 ORTHO05D000860 4.7e-06 53.9 35 65.7
CDE09G0511 Ceratophyllum demersum HOM05D000554 ORTHO05D010796 4.7e-06 53.9 35 65.7
PGR031G3809 Punica granatum HOM05D000554 ORTHO05D000860 4.7e-06 53.9 35 60.0
QL10p048265 Quercus lobata HOM05D000554 ORTHO05D000860 4.7e-06 53.9 33 72.7
Solyc11g008580.3 Solanum lycopersicum HOM05D000554 ORTHO05D000860 4.7e-06 53.9 35 60.0
Sopen11g004370 Solanum pennellii HOM05D000554 ORTHO05D000860 4.7e-06 53.9 35 60.0
Aa31LG9G17800 Aethionema arabicum HOM05D000554 ORTHO05D000860 6.2e-06 53.5 35 65.7
Cc00_g08700 Coffea canephora HOM05D000554 ORTHO05D000860 6.2e-06 53.5 35 65.7
Ca_20777_v3 Cicer arietinum L. HOM05D000554 ORTHO05D000860 8.1e-06 53.1 33 69.7
Duzib177G0989 Durio zibethinus HOM05D000554 ORTHO05D000860 8.1e-06 53.1 35 62.9
Eucgr.H02146 Eucalyptus grandis HOM05D000554 ORTHO05D000860 8.1e-06 53.1 33 69.7
Glyma.11G129000 Glycine max HOM05D000554 ORTHO05D000860 8.1e-06 53.1 33 69.7
Glyma.12G053500 Glycine max HOM05D000554 ORTHO05D000860 8.1e-06 53.1 33 69.7
Lsat_1_v5_gn_7_29680 Lactuca sativa HOM05D000554 ORTHO05D000860 8.1e-06 53.1 34 61.8
Lj6A57G43 Lonicera japonica HOM05D000554 ORTHO05D000860 8.1e-06 53.1 35 65.7
Lalb_Chr14g0372421 Lupinus albus HOM05D000554 ORTHO05D000860 8.1e-06 53.1 33 72.7
Lalb_Chr22g0352221 Lupinus albus HOM05D000554 ORTHO05D000860 8.1e-06 53.1 33 72.7
Phvul.005G152000 Phaseolus vulgaris HOM05D000554 ORTHO05D000860 8.1e-06 53.1 33 72.7
Phvul.011G055500 Phaseolus vulgaris HOM05D000554 ORTHO05D000860 8.1e-06 53.1 33 69.7
Pp3c23_14640 Physcomitrium patens HOM05D000554 ORTHO05D000860 8.1e-06 53.1 33 66.7
PGR083G1164 Punica granatum HOM05D000554 ORTHO05D000860 8.1e-06 53.1 33 72.7
Rhsim09G0029900 Rhododendron simsii HOM05D000554 ORTHO05D000860 8.1e-06 53.1 35 65.7
Zm00001eb383420 Zea mays HOM05D000554 ORTHO05D000860 8.1e-06 53.1 34 67.6
Zm00001eb425570 Zea mays HOM05D000554 ORTHO05D000860 8.1e-06 53.1 34 67.6


User provided reference genes

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