Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g27360 Nelumbo nucifera HOM05D007587 ORTHO05D009657 3.8e-33 144.1 63 100.0
Nn5g27362 Nelumbo nucifera HOM05D007587 ORTHO05D009657 5.5e-24 113.6 63 76.2
TAR381G0827 Trochodendron aralioides HOM05D007587 ORTHO05D009657 9.6e-21 102.8 64 67.2
Nn5g27361 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.8e-19 98.6 55 67.3
Zm00001eb052110 Zea mays HOM05D007587 ORTHO05D009657 4.1e-19 97.4 66 63.6
CiPaw.15G043600 Carya illinoinensis HOM05D007587 ORTHO05D009657 1.5e-18 95.5 66 63.6
Nn4g24320 Nelumbo nucifera HOM05D007587 ORTHO05D009657 5.9e-18 93.6 55 69.1
Manes.18G051550 Manihot esculenta HOM05D007587 ORTHO05D009657 1.0e-17 92.8 63 61.9
Os03g0673700 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 1.3e-17 92.4 68 60.3
Hma1.2p1_2651F.1_g326150 Hydrangea macrophylla HOM05D007587 ORTHO05D009657 1.7e-17 92.0 70 54.3
CSS0045179 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 2.2e-17 91.7 68 57.4
CiPaw.15G043500 Carya illinoinensis HOM05D007587 ORTHO05D009657 2.2e-17 91.7 66 60.6
Cfa017911 Carpinus fangiana HOM05D007587 ORTHO05D009657 2.9e-17 91.3 66 56.1
CDE06G1347 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 1.1e-16 89.4 57 64.9
COL.COLO4_35374 Corchorus olitorius HOM05D007587 ORTHO05D009657 2.5e-16 88.2 63 55.6
vmacro04609 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 2.5e-16 88.2 71 57.7
MBI16_g05021_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 4.2e-16 87.4 68 54.4
Atru.chr13.897 Acer truncatum HOM05D007587 ORTHO05D009657 5.5e-16 87.0 69 50.7
vmacro04608 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 5.5e-16 87.0 71 53.5
GSVIVG01034787001 Vitis vinifera HOM05D007587 ORTHO05D009657 9.3e-16 86.3 58 58.6
Thecc.08G082100 Theobroma cacao HOM05D007587 ORTHO05D009657 1.6e-15 85.5 63 55.6
vmacro04607 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 1.6e-15 85.5 71 50.7
Potri.005G150300 Populus trichocarpa HOM05D007587 ORTHO05D009657 2.1e-15 85.1 48 64.6
QL02p001961 Quercus lobata HOM05D007587 ORTHO05D009657 2.1e-15 85.1 66 56.1
CAN.G416.39 Capsicum annuum HOM05D007587 ORTHO05D009657 2.7e-15 84.7 74 51.4
Migut.O00867 Erythranthe guttata HOM05D007587 ORTHO05D009657 2.7e-15 84.7 63 54.0
SalBow7G1850 Salvia bowleyana HOM05D007587 ORTHO05D009657 2.7e-15 84.7 63 55.6
Actinidia29637 Actinidia chinensis HOM05D007587 ORTHO05D009657 3.6e-15 84.3 46 67.4
Nitab4.5_0015343g0010 Nicotiana tabacum HOM05D007587 ORTHO05D009657 3.6e-15 84.3 63 57.1
Cc10_g07830 Coffea canephora HOM05D007587 ORTHO05D009657 4.6e-15 84.0 64 56.2
Migut.C00432 Erythranthe guttata HOM05D007587 ORTHO05D009657 4.6e-15 84.0 63 54.0
Os03g0673400 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 4.6e-15 84.0 53 62.3
MBI16_g05020_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 6.1e-15 83.6 68 54.4
CDE04G0885 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 1.3e-14 82.4 48 62.5
PGSC0003DMG400004952 Solanum tuberosum HOM05D007587 ORTHO05D009657 2.3e-14 81.6 44 68.2
Rhsim07G0216100 Rhododendron simsii HOM05D007587 ORTHO05D009657 5.1e-14 80.5 58 53.4
AagrBONN_evm.TU.Sc2ySwM_117.169 Anthoceros agrestis HOM05D007587 ORTHO05D009657 1.9e-13 78.6 60 53.3
Rhsim07G0216200 Rhododendron simsii HOM05D007587 ORTHO05D009657 1.9e-13 78.6 46 63.0
Atru.chr3.473 Acer truncatum HOM05D007587 ORTHO05D009657 3.3e-13 77.8 57 54.4
Gohir.A01G124700 Gossypium hirsutum HOM05D007587 ORTHO05D009657 3.3e-13 77.8 63 49.2
Gohir.D01G112300 Gossypium hirsutum HOM05D007587 ORTHO05D009657 3.3e-13 77.8 63 49.2
Gorai.002G137200 Gossypium raimondii HOM05D007587 ORTHO05D009657 3.3e-13 77.8 63 49.2
Ciclev10027038m.g Citrus clementina HOM05D007587 ORTHO05D009657 2.8e-12 74.7 53 50.9
Zm00001eb135300 Zea mays HOM05D007587 ORTHO05D009657 3.7e-12 74.3 43 65.1
Medtr5g018610 Medicago truncatula HOM05D007587 ORTHO05D009657 6.3e-12 73.6 60 46.7
Prupe.7G145500 Prunus persica HOM05D007587 ORTHO05D009657 6.3e-12 73.6 51 54.9
SalBow1G8004 Salvia bowleyana HOM05D007587 ORTHO05D009657 1.1e-11 72.8 60 48.3
Nn5g28989 Nelumbo nucifera HOM05D007587 ORTHO05D009657 1.8e-11 72.0 32 96.9
Psat2g163680 Pisum sativum HOM05D007587 ORTHO05D009657 2.4e-11 71.6 65 41.5
Glyma.16G143900 Glycine max HOM05D007587 ORTHO05D009657 3.1e-11 71.2 58 44.8
Phvul.003G249500 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 3.1e-11 71.2 48 56.2
TPR.G29850 Trifolium pratense HOM05D007587 ORTHO05D009657 3.1e-11 71.2 43 55.8
CSS0038445 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 4.1e-11 70.9 60 46.7
CBR_g28808 Chara braunii HOM05D007587 ORTHO05D009657 4.1e-11 70.9 51 49.0
Os12g0596101 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 4.1e-11 70.9 43 60.5
QL06p044263 Quercus lobata HOM05D007587 ORTHO05D009657 5.3e-11 70.5 43 53.5
Sed0017528 Sechium edule HOM05D007587 ORTHO05D009657 5.3e-11 70.5 51 45.1
Dinv39924 Davidia involucrata HOM05D007587 ORTHO05D009657 6.9e-11 70.1 59 47.5
Psat0s261g0120 Pisum sativum HOM05D007587 ORTHO05D009657 6.9e-11 70.1 43 53.5
Manes.13G132300 Manihot esculenta HOM05D007587 ORTHO05D009657 9.1e-11 69.7 59 45.8
Mapoly0026s0006 Marchantia polymorpha HOM05D007587 ORTHO05D009657 9.1e-11 69.7 62 45.2
Pp3c20_19960 Physcomitrium patens HOM05D007587 ORTHO05D009657 9.1e-11 69.7 46 58.7
TAR381G1104 Trochodendron aralioides HOM05D007587 ORTHO05D009657 9.1e-11 69.7 58 44.8
Cpa.g.sc15.59 Carica papaya HOM05D007587 ORTHO05D009657 1.2e-10 69.3 43 55.8
Cc07_g05380 Coffea canephora HOM05D007587 ORTHO05D009657 1.2e-10 69.3 43 55.8
Migut.H00502 Erythranthe guttata HOM05D007587 ORTHO05D009657 1.2e-10 69.3 43 53.5
Potri.005G130750 Populus trichocarpa HOM05D007587 ORTHO05D009657 1.2e-10 69.3 57 45.6
Thecc.01G045600 Theobroma cacao HOM05D007587 ORTHO05D009657 1.2e-10 69.3 64 43.8
Nitab4.5_0005594g0030 Nicotiana tabacum HOM05D007587 ORTHO05D009657 1.5e-10 68.9 62 40.3
ECA238G1538 Erigeron canadensis HOM05D003002 ORTHO05D002276 2.0e-10 68.6 43 53.5
Lj7C15T6 Lonicera japonica HOM05D007587 ORTHO05D009657 2.0e-10 68.6 58 44.8
arahy.Tifrunner.gnm1.ann1.986LRW Arachis hypogaea HOM05D007587 ORTHO05D009657 2.6e-10 68.2 59 47.5
arahy.Tifrunner.gnm1.ann1.JQT6QK Arachis hypogaea HOM05D007587 ORTHO05D009657 2.6e-10 68.2 59 47.5
ClCG02G013040 Citrullus lanatus HOM05D007587 ORTHO05D009657 2.6e-10 68.2 61 44.3
COL.COLO4_22178 Corchorus olitorius HOM05D007587 ORTHO05D009657 2.6e-10 68.2 43 53.5
FAN23G2556 Fragaria x ananassa HOM05D007587 ORTHO05D009657 2.6e-10 68.2 43 53.5
FAN28G1310 Fragaria x ananassa HOM05D007587 ORTHO05D009657 2.6e-10 68.2 43 53.5
Manes.12G097400 Manihot esculenta HOM05D007587 ORTHO05D009657 2.6e-10 68.2 43 55.8
FAN26G0670 Fragaria x ananassa HOM05D007587 ORTHO05D009657 3.4e-10 67.8 43 53.5
Phvul.002G023800 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 3.4e-10 67.8 43 55.8
Pp3c24_89 Physcomitrium patens HOM05D007587 ORTHO05D009657 3.4e-10 67.8 68 52.9
Gohir.A11G188150 Gossypium hirsutum HOM05D007587 ORTHO05D009657 4.5e-10 67.4 43 53.5
Gohir.D11G194650 Gossypium hirsutum HOM05D007587 ORTHO05D009657 4.5e-10 67.4 43 53.5
Gorai.007G208100 Gossypium raimondii HOM05D007587 ORTHO05D009657 4.5e-10 67.4 43 53.5
Solyc02g090080.1 Solanum lycopersicum HOM05D007587 ORTHO05D009657 4.5e-10 67.4 43 55.8
Glyma.11G061100 Glycine max HOM05D007587 ORTHO05D009657 5.9e-10 67.0 43 53.5
Lj2g0021293 Lotus japonicus HOM05D007587 ORTHO05D009657 5.9e-10 67.0 57 42.1
CsaV3_2G017120 Cucumis sativus L. HOM05D007587 ORTHO05D009657 1.3e-09 65.9 55 45.5
Glyma.02G061500 Glycine max HOM05D007587 ORTHO05D009657 1.7e-09 65.5 43 51.2
Glyma.19G074100 Glycine max HOM05D007587 ORTHO05D009657 8.5e-09 63.2 43 48.8
Pp3c19_1061 Physcomitrium patens HOM05D007587 ORTHO05D009657 1.2e-07 59.3 45 53.3
Pp3c19_1062 Physcomitrium patens HOM05D007587 ORTHO05D009657 3.6e-07 57.8 44 54.5


User provided reference genes

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