Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g27277 Nelumbo nucifera HOM05D006459 ORTHO05D008414 2.5e-167 592.0 305 100.0
TAR628G1703 Trochodendron aralioides HOM05D006459 ORTHO05D008414 2.3e-112 409.5 247 84.2
GSVIVG01036383001 Vitis vinifera HOM05D006459 ORTHO05D008414 1.4e-109 400.2 252 81.7
Thecc.08G176900 Theobroma cacao HOM05D006459 ORTHO05D008414 7.8e-108 394.4 255 78.0
Actinidia29387 Actinidia chinensis HOM05D006459 ORTHO05D008414 8.6e-107 391.0 249 79.9
Gorai.009G266900 Gossypium raimondii HOM05D006459 ORTHO05D008414 1.1e-106 390.6 249 77.5
Atru.chr13.2479 Acer truncatum HOM05D006459 ORTHO05D008414 1.5e-106 390.2 256 77.7
MD08G1213000 Malus domestica HOM05D006459 ORTHO05D008414 4.3e-106 388.7 254 78.3
Gohir.D05G255500 Gossypium hirsutum HOM05D006459 ORTHO05D008414 1.2e-105 387.1 249 77.1
Prupe.1G544300 Prunus persica HOM05D006459 ORTHO05D008414 3.6e-105 385.6 254 77.6
Ciclev10020855m.g Citrus clementina HOM05D006459 ORTHO05D008414 4.7e-105 385.2 251 78.1
Gohir.A05G253500 Gossypium hirsutum HOM05D006459 ORTHO05D008414 4.7e-105 385.2 249 76.3
Haze_13948 Corylus avellana HOM05D006459 ORTHO05D008414 1.8e-104 383.3 249 79.5
Cpa.g.sc21.78 Carica papaya HOM05D006459 ORTHO05D008414 3.1e-104 382.5 254 75.2
MBI03_g28420_MAGBIO Magnolia biondii HOM05D006459 ORTHO05D008414 3.1e-104 382.5 244 78.7
CSS0029003 Camellia sinensis var. sinensis HOM05D006459 ORTHO05D008414 8.9e-104 380.9 248 77.0
CANSAT54G1068 Cannabis sativa HOM05D006459 ORTHO05D008414 1.5e-103 380.2 250 76.0
Dinv09391 Davidia involucrata HOM05D006459 ORTHO05D008414 2.0e-103 379.8 250 78.0
Potri.019G072900 Populus trichocarpa HOM05D006459 ORTHO05D008414 2.0e-103 379.8 257 75.1
CiPaw.03G015900 Carya illinoinensis HOM05D006459 ORTHO05D008414 2.6e-103 379.4 249 78.3
CiPaw.03G015700 Carya illinoinensis HOM05D006459 ORTHO05D008414 9.8e-103 377.5 249 77.5
Psat2g187200 Pisum sativum HOM05D006459 ORTHO05D008414 4.9e-102 375.2 248 73.8
Potri.013G099900 Populus trichocarpa HOM05D006459 ORTHO05D008414 4.9e-102 375.2 253 74.3
Solyc11g042430.2 Solanum lycopersicum HOM05D006459 ORTHO05D008414 4.9e-102 375.2 247 77.3
CAN.G924.3 Capsicum annuum HOM05D006459 ORTHO05D008414 6.4e-102 374.8 247 76.5
Sabra19G0084300 Salix brachista HOM05D006459 ORTHO05D008414 8.3e-102 374.4 258 73.3
Migut.C01370 Erythranthe guttata HOM05D006459 ORTHO05D008414 1.1e-101 374.0 251 77.7
Glyma.11G014000 Glycine max HOM05D006459 ORTHO05D008414 1.1e-101 374.0 251 74.5
Cfa008090 Carpinus fangiana HOM05D006459 ORTHO05D008414 1.4e-101 373.6 249 77.1
Sopen11g018500 Solanum pennellii HOM05D006459 ORTHO05D008414 1.4e-101 373.6 247 76.9
CsaV3_5G040000 Cucumis sativus L. HOM05D006459 ORTHO05D008414 1.9e-101 373.2 248 77.0
Eucgr.F02979 Eucalyptus grandis HOM05D006459 ORTHO05D008414 1.9e-101 373.2 251 75.7
Medtr5g008450 Medicago truncatula HOM05D006459 ORTHO05D008414 1.9e-101 373.2 248 72.6
COL.COLO4_24570 Corchorus olitorius HOM05D006459 ORTHO05D008414 2.4e-101 372.9 249 75.5
FvH4_5g33360 Fragaria vesca HOM05D006459 ORTHO05D008414 2.4e-101 372.9 249 77.1
Manes.18G118600 Manihot esculenta HOM05D006459 ORTHO05D008414 2.4e-101 372.9 255 74.1
MSTRG.1592 Avicennia marina HOM05D006459 ORTHO05D008414 7.0e-101 371.3 251 76.1
RcHm_v2.0_Chr7g0232091 Rosa chinensis HOM05D006459 ORTHO05D008414 1.2e-100 370.5 259 74.5
Aqoxy5G00842 Aquilegia oxysepala HOM05D006459 ORTHO05D008414 2.0e-100 369.8 261 76.2
Cc10_g08780 Coffea canephora HOM05D006459 ORTHO05D008414 2.0e-100 369.8 262 72.9
VMungo1215G2765 Vigna mungo HOM05D006459 ORTHO05D008414 2.0e-100 369.8 248 74.2
HPP92_005641 Vanilla planifolia HOM05D006459 ORTHO05D008414 4.6e-100 368.6 249 74.3
arahy.Tifrunner.gnm1.ann1.LVU4B6 Arachis hypogaea HOM05D006459 ORTHO05D008414 6.0e-100 368.2 248 73.0
Phvul.002G036200 Phaseolus vulgaris HOM05D006459 ORTHO05D008414 7.8e-100 367.9 248 74.2
Ca_24473_v3 Cicer arietinum L. HOM05D006459 ORTHO05D008414 1.0e-99 367.5 248 72.6
ClCG08G001020 Citrullus lanatus HOM05D006459 ORTHO05D008414 3.0e-99 365.9 248 75.8
LjContig00222g0004888 Lotus japonicus HOM05D006459 ORTHO05D008414 3.0e-99 365.9 244 74.6
TWI75G0925 Tripterygium wilfordii HOM05D006459 ORTHO05D008414 3.9e-99 365.5 253 72.7
Lalb_Chr09g0320511 Lupinus albus HOM05D006459 ORTHO05D008414 6.6e-99 364.8 237 73.8
MELO3C022178.2 Cucumis melo HOM05D006459 ORTHO05D008414 1.5e-98 363.6 251 74.9
THA.LOC104815846 Tarenaya hassleriana HOM05D006459 ORTHO05D008414 2.5e-98 362.8 248 72.6
BcaB01g02766 Brassica carinata HOM05D006459 ORTHO05D008414 3.3e-98 362.5 244 74.2
PSO170G3138 Papaver somniferum HOM05D006459 ORTHO05D008414 9.5e-98 360.9 249 74.3
Sed0024118 Sechium edule HOM05D006459 ORTHO05D008414 9.5e-98 360.9 248 75.8
PGR042G0716 Punica granatum HOM05D006459 ORTHO05D008414 2.8e-97 359.4 252 71.8
BcaC01g04692 Brassica carinata HOM05D006459 ORTHO05D008414 3.6e-97 359.0 244 73.4
BolC3t15799H Brassica oleracea HOM05D006459 ORTHO05D008414 3.6e-97 359.0 244 73.4
Peaxi162Scf00078g00423 Petunia axillaris HOM05D006459 ORTHO05D008414 3.6e-97 359.0 242 76.4
BraA03t12083Z Brassica rapa HOM05D006459 ORTHO05D008414 4.7e-97 358.6 244 73.4
SalBow7G1102 Salvia bowleyana HOM05D006459 ORTHO05D008414 4.7e-97 358.6 251 73.3
EL10Ac1g01666 Beta vulgaris HOM05D006459 ORTHO05D008414 6.2e-97 358.2 244 72.5
Carub.0006s2860 Capsella rubella HOM05D006459 ORTHO05D008414 6.2e-97 358.2 252 73.0
QL09p002119 Quercus lobata HOM05D006459 ORTHO05D008414 6.2e-97 358.2 254 72.8
Sp6g07420 Schrenkiella parvula HOM05D006459 ORTHO05D008414 6.2e-97 358.2 250 74.0
C03p34880 Brassica napus HOM05D006459 ORTHO05D008414 3.1e-96 355.9 244 73.0
Oeu023200.3 Olea europaea HOM05D006459 ORTHO05D008414 3.1e-96 355.9 212 81.6
A03p28850 Brassica napus HOM05D006459 ORTHO05D008414 4.0e-96 355.5 244 73.0
AT4G10050 Arabidopsis thaliana HOM05D006459 ORTHO05D008414 5.2e-96 355.1 248 73.4
HanXRQChr14g0455131 Helianthus annuus HOM05D006459 ORTHO05D008414 8.9e-96 354.4 249 73.9
PSO017G7078 Papaver somniferum HOM05D006459 ORTHO05D008414 8.9e-96 354.4 249 73.1
TPR.G37896 Trifolium pratense HOM05D006459 ORTHO05D008414 8.9e-96 354.4 300 60.0
MD15G1395500 Malus domestica HOM05D006459 ORTHO05D008414 1.2e-95 354.0 247 75.3
AL6G43830 Arabidopsis lyrata HOM05D006459 ORTHO05D008414 1.5e-95 353.6 245 73.9
Thhalv10028776m.g Eutrema salsugineum HOM05D006459 ORTHO05D008414 4.4e-95 352.1 246 72.8
Aa31LG9G11940 Aethionema arabicum HOM05D006459 ORTHO05D008414 5.8e-95 351.7 248 72.6
Lsat_1_v5_gn_4_65220 Lactuca sativa HOM05D006459 ORTHO05D008414 1.7e-94 350.1 248 71.0
ECA234G2100 Erigeron canadensis HOM05D006459 ORTHO05D008414 2.2e-94 349.7 253 71.1
FAN04G1764 Fragaria x ananassa HOM05D006459 ORTHO05D008414 7.1e-93 344.7 278 67.3
Zm00001eb082080 Zea mays HOM05D006459 ORTHO05D008414 6.0e-92 341.7 251 70.5
Os04g0443500 Oryza sativa ssp. japonica HOM05D006459 ORTHO05D008414 2.3e-91 339.7 249 70.3
ATR1089G027 Amborella trichopoda HOM05D006459 ORTHO05D008414 3.0e-91 339.3 256 67.2
unitig_8.g4894 Utricularia gibba HOM05D006459 ORTHO05D008414 1.6e-89 333.6 255 68.6
Nitab4.5_0000903g0050 Nicotiana tabacum HOM05D006459 ORTHO05D008414 7.1e-85 318.2 247 67.6
Sc25g0003010 Simmondsia chinensis HOM05D006459 ORTHO05D008414 7.1e-85 318.2 185 84.3
Nitab4.5_0003013g0010 Nicotiana tabacum HOM05D006459 ORTHO05D008414 2.7e-84 316.2 247 66.8
TWI12G1446 Tripterygium wilfordii HOM05D006459 ORTHO05D008414 7.8e-84 314.7 179 86.6
Mapoly0007s0278 Marchantia polymorpha HOM05D006459 ORTHO05D008414 5.6e-82 308.5 238 63.9
Pp3c6_4660 Physcomitrium patens HOM05D006459 ORTHO05D008414 5.6e-82 308.5 257 60.7
AagrBONN_evm.TU.Sc2ySwM_117.506 Anthoceros agrestis HOM05D006459 ORTHO05D008414 3.1e-80 302.8 235 63.0
Nitab4.5_0000999g0010 Nicotiana tabacum HOM05D006459 ORTHO05D008414 3.4e-79 299.3 239 66.1
Lj9A698G57 Lonicera japonica HOM05D006459 ORTHO05D008414 1.1e-77 294.3 278 59.7
arahy.Tifrunner.gnm1.ann1.K3NID2 Arachis hypogaea HOM05D006459 ORTHO05D008414 2.1e-76 290.0 238 63.0
SMO356G0681 Selaginella moellendorffii HOM05D006459 ORTHO05D008414 1.4e-72 277.3 210 64.3
vmacro16046 Vaccinium macrocarpon HOM05D006459 ORTHO05D008414 3.2e-69 266.2 167 80.8
Rhsim02G0145500 Rhododendron simsii HOM05D006459 ORTHO05D008414 5.4e-69 265.4 397 45.3
AUR62034346 Chenopodium quinoa HOM05D006459 ORTHO05D008414 3.5e-68 262.7 161 79.5
CBR_g45928 Chara braunii HOM05D006459 ORTHO05D008414 2.5e-66 256.5 211 59.7
SHI16717 Sapria himalayana HOM05D006459 ORTHO05D008414 7.4e-66 255.0 230 61.3
SGA_v2.0_scaffold118G32601 Striga asiatica HOM05D006459 ORTHO05D008414 3.1e-64 249.6 243 60.9
Duzib268G1319 Durio zibethinus HOM05D006459 ORTHO05D008414 3.8e-62 242.7 253 54.9
DCAR_017359 Daucus carota HOM05D006459 ORTHO05D008414 3.5e-60 236.1 143 81.1
Cre12.g521250 Chlamydomonas reinhardtii HOM05D006459 ORTHO05D008414 2.5e-42 176.8 273 39.2
HPP92_005618 Vanilla planifolia HOM05D006459 ORTHO05D008414 4.3e-42 176.0 97 84.5
Glyma.01G230800 Glycine max HOM05D006459 ORTHO05D008414 1.7e-38 164.1 97 82.5
Haze_26337 Corylus avellana HOM05D006459 ORTHO05D008414 6.5e-38 162.2 241 41.5
Hma1.2p1_0074F.1_g039070 Hydrangea macrophylla HOM05D006459 ORTHO05D008414 3.2e-37 159.8 96 84.4
SEGI_15073 Sequoiadendron giganteum HOM05D006459 ORTHO05D008414 1.7e-33 147.5 96 74.0
PRCOL_00002994 Prasinoderma coloniale HOM05D006459 ORTHO05D008414 2.6e-26 123.6 223 37.7
MCO04G089 Micromonas commoda HOM05D006459 ORTHO05D008414 4.4e-26 122.9 220 39.1
Hma1.2p1_0074F.1_g039080 Hydrangea macrophylla HOM05D006459 ORTHO05D008414 2.2e-25 120.6 69 82.6
Nn179s44626 Nelumbo nucifera HOM05D006459 ORTHO05D008414 6.1e-20 102.4 56 100.0
SEGI_06082 Sequoiadendron giganteum HOM05D006459 ORTHO05D008414 2.3e-19 100.5 76 67.1
MELO3C033538.2 Cucumis melo HOM05D006459 ORTHO05D169875 2.2e-09 67.4 143 34.3
HPP92_005619 Vanilla planifolia HOM05D006459 ORTHO05D008414 4.8e-09 66.2 37 75.7
SEGI_14439 Sequoiadendron giganteum HOM05D006459 ORTHO05D385787 2.9e-06 57.0 64 51.6


User provided reference genes

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