Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 7.6e-95 350.5 181 100.0
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 1.5e-79 299.7 180 84.4
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 8.5e-78 293.9 178 83.7
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 7.9e-76 287.3 177 81.9
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 3.0e-75 285.4 174 80.5
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 2.2e-73 279.3 180 79.4
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 1.1e-72 276.9 169 81.1
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 1.8e-72 276.2 180 77.8
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 2.4e-72 275.8 179 78.8
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 5.3e-72 274.6 180 74.4
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 7.0e-72 274.2 179 76.0
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 2.0e-71 272.7 178 78.1
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 3.5e-71 271.9 174 75.9
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 4.5e-71 271.6 181 75.1
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 4.5e-71 271.6 174 78.7
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 5.9e-71 271.2 178 78.7
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 7.7e-71 270.8 174 78.7
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.0e-70 270.4 174 77.0
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 2.9e-70 268.9 177 76.3
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.9e-70 268.9 174 76.4
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 2.9e-70 268.9 174 76.4
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 3.8e-70 268.5 174 78.7
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 5.0e-70 268.1 176 78.4
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 5.0e-70 268.1 181 73.5
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 8.5e-70 267.3 177 75.7
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 1.1e-69 266.9 174 78.2
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 1.1e-69 266.9 174 77.6
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 1.9e-69 266.2 179 73.7
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 2.5e-69 265.8 174 77.0
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 3.2e-69 265.4 174 77.0
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 4.2e-69 265.0 174 77.6
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 9.4e-69 263.8 181 72.4
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 1.2e-68 263.5 175 73.7
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 4.7e-68 261.5 175 75.4
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 4.7e-68 261.5 180 73.9
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 4.7e-68 261.5 178 74.2
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 2.3e-67 259.2 179 73.7
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 2.3e-67 259.2 174 77.0
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 3.9e-67 258.5 174 74.1
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 3.9e-67 258.5 175 73.7
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 1.1e-66 256.9 177 74.6
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 1.5e-66 256.5 169 77.5
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 2.6e-66 255.8 162 79.6
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 2.6e-66 255.8 194 67.5
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 2.6e-66 255.8 172 73.8
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 5.7e-66 254.6 175 72.6
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 5.7e-66 254.6 169 76.3
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 9.7e-66 253.8 174 75.3
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 2.8e-65 252.3 174 74.1
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 1.4e-64 250.0 169 73.4
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.4e-64 250.0 174 74.1
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 1.4e-64 250.0 184 72.3
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 5.3e-64 248.1 184 71.2
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 5.3e-64 248.1 164 78.0
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 9.1e-64 247.3 169 75.1
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 9.1e-64 247.3 177 65.5
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 2.0e-63 246.1 178 71.3
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.6e-63 245.7 171 74.9
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 3.5e-63 245.4 171 74.9
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 4.5e-63 245.0 175 68.0
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 4.5e-63 245.0 175 68.0
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 4.5e-63 245.0 174 71.8
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 5.9e-63 244.6 204 63.2
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 7.7e-63 244.2 180 68.3
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 1.7e-62 243.0 177 67.2
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 1.7e-62 243.0 177 67.2
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 1.7e-62 243.0 177 67.2
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 2.2e-62 242.7 170 72.4
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 5.0e-62 241.5 181 70.7
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 5.0e-62 241.5 166 71.7
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 6.5e-62 241.1 180 67.8
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 6.5e-62 241.1 174 70.1
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 8.5e-62 240.7 157 76.4
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 8.5e-62 240.7 170 71.2
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 1.5e-61 240.0 180 66.7
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 1.9e-61 239.6 165 72.7
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 1.9e-61 239.6 179 69.3
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 1.9e-61 239.6 255 54.9
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.5e-61 239.2 169 74.0
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 2.5e-61 239.2 190 66.8
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 3.2e-61 238.8 174 68.4
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 5.5e-61 238.0 181 68.0
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 9.4e-61 237.3 158 74.7
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 9.4e-61 237.3 174 69.0
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 2.1e-60 236.1 190 67.4
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 2.7e-60 235.7 168 70.2
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 2.7e-60 235.7 177 66.7
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 2.7e-60 235.7 177 66.7
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 2.7e-60 235.7 177 66.7
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 2.7e-60 235.7 177 66.7
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 2.7e-60 235.7 162 73.5
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 3.6e-60 235.3 185 65.4
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 4.7e-60 235.0 160 75.6
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 4.7e-60 235.0 169 70.4
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 6.1e-60 234.6 174 68.4
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 8.0e-60 234.2 177 66.1
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 8.0e-60 234.2 194 66.0
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 1.0e-59 233.8 180 66.1
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 1.0e-59 233.8 166 67.5
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 1.4e-59 233.4 193 65.3
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 1.8e-59 233.0 174 68.4
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 5.2e-59 231.5 190 64.2
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 8.8e-59 230.7 177 66.1
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 1.2e-58 230.3 177 64.4
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 2.6e-58 229.2 177 68.4
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 2.6e-58 229.2 175 67.4
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 9.7e-58 227.3 160 71.9
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.7e-57 226.5 153 73.9
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 1.7e-57 226.5 153 73.9
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 1.7e-57 226.5 177 64.4
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.2e-57 226.1 153 73.2
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 2.8e-57 225.7 174 65.5
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 3.1e-56 222.2 174 65.5
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 4.1e-56 221.9 170 66.5
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 4.1e-56 221.9 156 71.2
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 4.1e-56 221.9 190 65.8
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 7.0e-56 221.1 174 64.9
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 4.5e-55 218.4 175 65.7
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 7.7e-55 217.6 170 68.8
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 1.0e-54 217.2 163 63.2
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 3.8e-54 215.3 206 56.8
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 5.0e-54 214.9 192 60.9
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 6.5e-54 214.5 163 61.3
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 1.9e-53 213.0 171 66.7
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 5.5e-53 211.5 126 81.0
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 5.5e-53 211.5 174 65.5
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 1.4e-51 206.8 156 66.7
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 1.4e-51 206.8 126 78.6
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 1.8e-51 206.5 199 56.8
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 5.2e-51 204.9 124 81.5
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 5.7e-50 201.4 126 77.8
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 7.5e-50 201.1 123 83.7
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 7.5e-50 201.1 166 63.3
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 7.5e-50 201.1 120 79.2
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 2.8e-49 199.1 161 64.0
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 6.3e-49 198.0 132 75.8
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 8.3e-49 197.6 126 77.8
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 1.6e-47 193.4 126 75.4
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 2.3e-46 189.5 130 76.2
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 6.6e-46 188.0 132 75.8
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 1.0e-43 180.6 155 63.2
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 2.0e-42 176.4 145 60.7
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 1.7e-41 173.3 149 56.4
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 9.2e-40 167.5 130 66.2
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 2.7e-39 166.0 120 64.2
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 2.7e-39 166.0 144 56.9
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 5.9e-39 164.9 162 51.2
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 1.0e-38 164.1 151 53.0
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 3.9e-38 162.2 163 51.5
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 1.9e-37 159.8 118 69.5
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 3.6e-36 155.6 150 51.3
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 3.4e-34 149.1 153 52.9
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 5.8e-34 148.3 116 65.5
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 4.1e-32 142.1 91 74.7
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 3.3e-29 132.5 112 67.0
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 8.9e-27 124.4 108 63.0
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 4.1e-24 115.5 148 45.9
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 1.9e-21 106.7 90 63.3
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.2e-12 77.4 79 46.8
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 3.1e-11 72.8 46 82.6
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 8.9e-11 71.2 46 80.4
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 8.9e-11 71.2 46 80.4
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 2.6e-10 69.7 44 77.3
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 5.8e-10 68.6 47 76.6
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 1.7e-09 67.0 45 66.7


User provided reference genes

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