Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 0.0e+00 1133.6 553 100.0
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 4.6e-276 954.1 543 86.2
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 1.5e-271 939.1 545 84.2
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 1.1e-269 932.9 543 82.5
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 1.4e-269 932.6 544 84.2
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 1.9e-269 932.2 521 86.4
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 3.5e-268 927.9 543 82.9
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 1.0e-267 926.4 546 81.7
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 1.3e-267 926.0 517 85.5
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 3.9e-267 924.5 518 86.5
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 3.9e-267 924.5 544 82.9
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 3.3e-266 921.4 516 86.0
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 5.6e-266 920.6 517 84.9
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 7.4e-266 920.2 548 82.3
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.6e-265 919.1 517 84.7
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 2.1e-265 918.7 517 84.5
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.4e-264 916.0 546 81.5
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 3.1e-264 914.8 517 84.3
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 1.2e-263 912.9 520 83.3
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 2.0e-263 912.1 524 83.4
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 1.3e-262 909.4 545 81.8
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.3e-262 909.4 517 83.2
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.3e-262 909.4 517 83.2
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 1.3e-262 909.4 517 83.2
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 8.4e-262 906.7 549 81.1
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 1.4e-261 906.0 547 80.1
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 7.1e-261 903.7 547 79.9
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 1.2e-260 902.9 517 84.5
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 2.7e-260 901.7 519 83.8
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 3.5e-260 901.4 543 80.7
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 3.5e-260 901.4 554 79.2
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 1.0e-259 899.8 517 83.9
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 5.1e-259 897.5 547 80.6
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 5.1e-259 897.5 547 81.2
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 5.7e-258 894.0 545 80.9
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 3.7e-257 891.3 525 83.0
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 4.8e-257 891.0 521 83.1
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 6.3e-257 890.6 516 82.2
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 6.3e-257 890.6 548 80.7
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 1.8e-256 889.0 543 78.5
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 3.1e-256 888.3 519 81.9
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 4.1e-256 887.9 522 82.0
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 5.3e-256 887.5 546 80.6
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 1.2e-255 886.3 525 81.3
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 2.0e-255 885.6 518 83.2
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 2.0e-255 885.6 566 77.4
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 2.0e-255 885.6 543 78.6
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 4.5e-255 884.4 544 78.9
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 4.5e-255 884.4 550 78.7
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 7.7e-255 883.6 550 79.1
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 2.2e-254 882.1 520 82.3
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 2.9e-254 881.7 551 79.3
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 2.9e-254 881.7 547 79.2
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 3.8e-254 881.3 561 76.6
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 5.0e-254 880.9 547 79.2
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 5.0e-254 880.9 545 78.0
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 6.5e-254 880.6 561 76.5
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 6.5e-254 880.6 548 78.3
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 8.5e-254 880.2 519 82.5
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 8.5e-254 880.2 545 77.8
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 1.4e-253 879.4 523 78.8
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.9e-253 879.0 561 76.5
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 1.9e-253 879.0 548 79.6
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 2.5e-253 878.6 543 78.6
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 7.2e-253 877.1 546 78.8
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 7.2e-253 877.1 548 79.6
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 9.4e-253 876.7 543 77.7
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.2e-252 876.3 561 76.3
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 1.6e-252 875.9 543 78.3
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 2.1e-252 875.5 554 77.1
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 2.7e-252 875.2 551 77.7
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 2.7e-252 875.2 544 78.1
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 1.0e-251 873.2 552 78.4
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 1.4e-251 872.8 550 78.5
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 2.3e-251 872.1 546 78.6
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 6.7e-251 870.5 548 78.3
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 8.8e-251 870.2 646 68.7
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 8.8e-251 870.2 532 79.3
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 3.3e-250 868.2 552 77.5
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 4.3e-250 867.8 560 76.8
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 7.4e-250 867.1 526 80.6
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 9.7e-250 866.7 541 76.5
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 1.3e-249 866.3 551 77.1
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 1.7e-249 865.9 546 78.0
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 2.8e-249 865.1 554 75.8
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 1.1e-248 863.2 538 78.1
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 1.4e-248 862.8 550 76.5
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 1.8e-248 862.4 554 75.5
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 3.1e-248 861.7 586 74.7
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 5.3e-248 860.9 547 77.9
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 6.9e-248 860.5 545 76.5
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 1.2e-247 859.8 553 77.8
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 1.5e-247 859.4 545 76.1
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 3.8e-246 854.7 544 76.1
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 1.1e-245 853.2 545 77.8
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 2.5e-245 852.0 565 74.9
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 5.5e-245 850.9 548 75.5
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 5.5e-245 850.9 544 75.7
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 1.6e-244 849.4 547 75.5
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 2.7e-244 848.6 547 75.3
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 1.4e-243 846.3 548 74.6
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 6.7e-243 844.0 546 74.5
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 8.8e-243 843.6 488 83.2
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 1.5e-242 842.8 546 74.5
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 2.0e-242 842.4 546 74.7
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 1.3e-241 839.7 520 77.3
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 2.2e-241 839.0 549 74.3
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 8.2e-241 837.0 549 74.1
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 1.4e-240 836.3 550 74.0
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 1.8e-240 835.9 519 79.2
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 7.0e-240 833.9 548 74.1
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 7.0e-240 833.9 558 75.1
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 3.5e-239 831.6 520 76.0
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 4.5e-239 831.2 548 74.3
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 8.5e-238 827.0 550 73.1
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 1.1e-237 826.6 549 73.0
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 5.7e-234 814.3 470 85.1
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 7.4e-234 813.9 556 73.9
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 2.0e-231 805.8 550 73.8
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 2.7e-228 795.4 470 81.5
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 3.7e-225 785.0 548 69.7
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 3.1e-224 781.9 511 73.2
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 1.7e-222 776.2 874 50.9
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 1.6e-220 769.6 442 83.7
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 3.4e-218 761.9 840 51.3
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 1.2e-212 743.4 538 70.1
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 9.2e-200 700.7 464 73.5
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 3.3e-197 692.2 517 66.7
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 1.6e-196 689.9 517 66.7
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 4.7e-196 688.3 561 62.2
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 4.6e-191 671.8 352 91.5
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 8.1e-180 634.4 531 56.9
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 5.1e-158 562.0 291 93.5
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.8e-155 553.5 384 73.2
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 1.0e-150 537.7 328 82.6
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 1.0e-142 511.1 539 49.4
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 4.2e-136 489.2 259 92.7
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.7e-121 440.7 395 62.5
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 4.1e-107 392.9 304 59.5
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 3.2e-91 340.1 188 88.8
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 1.2e-90 338.2 442 43.2
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 7.8e-90 335.5 229 69.4
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 3.6e-87 326.6 410 42.0
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 8.9e-86 322.0 226 70.4
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 8.3e-84 315.5 523 34.4
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 4.3e-80 303.1 214 70.1
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 2.1e-74 284.3 214 65.0
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 2.1e-74 284.3 214 65.0
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 2.2e-68 264.2 166 75.3
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 3.2e-67 260.4 163 74.8
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 4.0e-62 243.4 352 38.6
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 9.9e-61 238.8 349 35.8
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 1.4e-51 208.4 228 51.8
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 2.8e-31 141.0 72 94.4
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 1.5e-29 135.2 115 55.7
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 1.0e-28 132.5 155 51.0
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 1.0e-28 132.5 155 51.0
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 1.6e-26 125.2 60 98.3
CDE05G0837 Ceratophyllum demersum HOM05D004337 ORTHO05D043897 1.5e-13 82.0 74 56.8
SHI11402 Sapria himalayana HOM05D000039 ORTHO05D006865 3.4e-13 80.9 48 70.8
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 3.2e-11 74.3 49 67.3
AUR62044516 Chenopodium quinoa HOM05D004337 ORTHO05D021976 3.2e-11 74.3 49 67.3
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 2.3e-09 68.2 43 72.1
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 2.2e-07 61.6 29 93.1


User provided reference genes

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