Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 2166.7 1079 100.0
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1716.4 1016 83.6
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1670.6 1019 80.6
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1667.5 1015 81.0
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1659.0 1016 80.0
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1641.7 1019 79.4
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1629.8 1023 77.5
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1619.4 1013 78.2
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1616.3 1021 77.7
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1613.6 1019 78.9
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1610.1 1016 78.1
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1609.3 1016 78.0
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1605.1 1016 79.1
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1602.4 1014 77.8
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1602.4 1022 77.9
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1599.3 1014 77.7
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1597.4 1009 77.1
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1595.5 1024 77.6
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1591.2 1011 77.9
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1591.2 1051 74.7
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1590.9 1013 77.6
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1590.5 1018 77.2
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1589.3 1013 76.8
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1586.2 1015 76.6
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1585.9 1016 77.4
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1585.1 1013 77.4
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1583.2 1022 76.3
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1582.0 1019 77.5
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1581.6 1015 76.2
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1581.6 1011 76.6
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1580.1 1015 76.3
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1578.9 1017 75.8
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1576.2 1020 76.3
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1575.5 1018 75.7
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1575.1 1016 78.1
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1572.8 1011 76.1
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1571.2 1019 75.1
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1568.9 1015 76.1
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1568.9 1019 75.2
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1568.5 1017 75.3
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1567.0 1011 75.6
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1564.3 1011 76.9
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1562.0 1019 74.7
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1554.7 1011 76.1
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1554.3 1015 75.1
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1552.3 1010 75.0
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1548.1 1015 74.4
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1547.7 1029 74.2
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1544.3 1016 73.5
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1543.9 1013 74.4
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1543.1 1016 74.4
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1542.7 1023 75.0
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1541.2 1015 75.8
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1539.2 1015 74.4
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1536.5 1015 74.2
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1534.6 1015 75.5
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1534.2 1091 70.5
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1533.5 1016 75.9
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1533.5 1016 75.9
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1532.7 1015 73.9
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1530.4 1016 72.2
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1530.0 1022 74.9
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1526.5 1015 75.3
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1526.1 1090 70.4
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1524.6 1032 73.0
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1522.3 1024 73.8
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1520.8 1017 73.1
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1512.3 1013 74.1
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1508.0 1012 72.9
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1507.7 1010 72.4
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1507.7 1010 72.4
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1503.8 981 75.7
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1503.4 1049 71.0
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1501.9 1014 73.4
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1500.3 1025 70.7
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1500.0 1012 72.7
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1499.6 1016 72.9
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1497.6 1023 73.5
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1495.7 1010 73.3
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1494.2 1011 72.7
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1492.6 1010 73.4
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1492.2 1038 72.0
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1490.7 1010 73.3
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1490.7 998 73.8
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1489.6 1010 73.1
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1489.2 1017 72.4
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1486.5 1010 72.7
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1484.5 1033 71.6
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1484.5 1010 72.5
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1482.2 1010 72.6
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1482.2 1010 72.6
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1476.5 929 77.9
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1473.0 1010 72.2
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1472.6 1010 72.2
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1472.6 1017 72.0
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1471.8 1010 72.1
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1470.7 1011 70.8
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1469.1 1019 71.2
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1468.8 1010 71.9
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1468.4 1017 71.1
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1466.8 996 72.5
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1465.7 1085 66.5
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1464.1 1037 71.3
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1455.3 1048 68.9
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1442.2 1038 69.1
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1441.4 1016 72.8
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1436.0 1034 67.7
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1402.1 1016 69.6
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1362.8 1032 64.8
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1355.5 1013 69.5
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1311.6 1006 67.5
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1261.1 790 79.2
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1194.1 693 84.8
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1177.9 717 81.2
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1162.1 675 83.4
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1161.0 1033 56.4
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1149.4 1014 55.4
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1129.0 1056 53.2
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1122.8 1020 54.9
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1119.0 1057 53.7
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 2.7e-296 1022.3 817 64.5
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 3.3e-294 1015.4 770 65.1
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 1.2e-291 1006.9 687 73.1
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 7.4e-270 934.5 613 76.8
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 2.9e-250 869.4 688 65.7
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 5.1e-247 858.6 887 50.6
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 1.8e-236 823.5 508 78.1
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.6e-227 793.9 559 69.9
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 9.4e-225 784.6 980 47.7
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 5.8e-174 615.9 447 71.1
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 1.4e-159 568.2 551 54.1
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 7.6e-150 535.8 307 81.8
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.5e-134 485.0 312 76.0
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 2.6e-105 387.9 316 64.2
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.9e-68 265.4 205 66.3
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 2.1e-62 245.4 136 80.9
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 2.0e-57 228.8 180 65.6
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 6.0e-54 217.2 138 70.3
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 1.2e-46 193.0 170 60.6
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 9.0e-34 150.2 179 48.0
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 7.2e-31 140.6 156 49.4
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 1.0e-29 136.7 73 83.6
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 1.0e-24 120.2 88 64.8
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 1.0e-24 120.2 97 62.9
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 3.0e-21 108.6 96 57.3
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 2.5e-15 89.0 76 50.0
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 7.2e-15 87.4 147 39.5
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 1.5e-12 79.7 46 82.6
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 5.7e-12 77.8 49 69.4
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 2.9e-08 65.5 33 90.9
Os05g0105050 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D297587 1.5e-07 63.2 82 47.6
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 1.6e-06 59.7 39 71.8


User provided reference genes

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