Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g27130 Nelumbo nucifera HOM05D005994 ORTHO05D007322 2.7e-28 127.9 61 100.0
Aqoxy4G02214 Aquilegia oxysepala HOM05D005994 ORTHO05D007322 5.5e-21 103.6 56 89.3
MSTRG.14470 Avicennia marina HOM05D005994 ORTHO05D007322 1.2e-20 102.4 52 92.3
Duzib235G0800 Durio zibethinus HOM05D005994 ORTHO05D007322 1.6e-20 102.1 52 88.5
HanXRQChr08g0213481 Helianthus annuus HOM05D005994 ORTHO05D007322 2.1e-20 101.7 52 92.3
MSTRG.13010 Avicennia marina HOM05D005994 ORTHO05D007322 2.7e-20 101.3 52 88.5
Sc03g0008000 Simmondsia chinensis HOM05D005994 ORTHO05D007322 2.7e-20 101.3 52 88.5
vmacro09668 Vaccinium macrocarpon HOM05D005994 ORTHO05D007322 2.7e-20 101.3 56 87.5
Actinidia05033 Actinidia chinensis HOM05D005994 ORTHO05D007322 3.6e-20 100.9 56 87.5
CSS0045306 Camellia sinensis var. sinensis HOM05D005994 ORTHO05D007322 3.6e-20 100.9 56 87.5
CANSAT56G3985 Cannabis sativa HOM05D005994 ORTHO05D007322 3.6e-20 100.9 52 86.5
Glyma.09G011900 Glycine max HOM05D005994 ORTHO05D007322 3.6e-20 100.9 52 88.5
Glyma.15G116500 Glycine max HOM05D005994 ORTHO05D007322 3.6e-20 100.9 52 88.5
Lalb_Chr03g0035721 Lupinus albus HOM05D005994 ORTHO05D007322 3.6e-20 100.9 52 88.5
vmacro11561 Vaccinium macrocarpon HOM05D005994 ORTHO05D007322 3.6e-20 100.9 56 85.7
Actinidia00094 Actinidia chinensis HOM05D005994 ORTHO05D007322 4.6e-20 100.5 56 85.7
Migut.M01676 Erythranthe guttata HOM05D005994 ORTHO05D007322 4.6e-20 100.5 52 90.4
Phvul.006G141600 Phaseolus vulgaris HOM05D005994 ORTHO05D007322 4.6e-20 100.5 52 86.5
Rhsim06G0226700 Rhododendron simsii HOM05D005994 ORTHO05D007322 4.6e-20 100.5 56 85.7
Sed0000308 Sechium edule HOM05D005994 ORTHO05D007322 4.6e-20 100.5 52 86.5
unitig_747.g21642 Utricularia gibba HOM05D005994 ORTHO05D007322 4.6e-20 100.5 52 90.4
Thecc.06G236600 Theobroma cacao HOM05D005994 ORTHO05D007322 6.1e-20 100.1 52 86.5
TAR626G0394 Trochodendron aralioides HOM05D005994 ORTHO05D007322 6.1e-20 100.1 51 94.1
PSO063G2191 Papaver somniferum HOM05D005994 ORTHO05D007322 7.9e-20 99.8 56 83.9
ECA246G1213 Erigeron canadensis HOM05D005994 ORTHO05D007322 1.0e-19 99.4 52 90.4
Gohir.A06G204600 Gossypium hirsutum HOM05D005994 ORTHO05D007322 1.0e-19 99.4 52 88.5
Gohir.D06G216900 Gossypium hirsutum HOM05D005994 ORTHO05D007322 1.0e-19 99.4 52 88.5
Gorai.010G249300 Gossypium raimondii HOM05D005994 ORTHO05D007322 1.0e-19 99.4 52 88.5
Lsat_1_v5_gn_5_8041 Lactuca sativa HOM05D000063 ORTHO05D000906 1.0e-19 99.4 52 90.4
Sopen07g033490 Solanum pennellii HOM05D005994 ORTHO05D007322 1.0e-19 99.4 52 90.4
HPP92_013264 Vanilla planifolia HOM05D005994 ORTHO05D007322 1.0e-19 99.4 56 83.9
ClCG01G010630 Citrullus lanatus HOM05D005994 ORTHO05D007322 1.3e-19 99.0 52 86.5
MELO3C025540.2 Cucumis melo HOM05D005994 ORTHO05D007322 1.3e-19 99.0 52 86.5
Lj6g0002817 Lotus japonicus HOM05D005994 ORTHO05D007322 1.3e-19 99.0 52 86.5
Lalb_Chr19g0129971 Lupinus albus HOM05D005994 ORTHO05D007322 1.3e-19 99.0 52 84.6
Nitab4.5_0000163g0320 Nicotiana tabacum HOM05D005994 ORTHO05D007322 1.3e-19 99.0 52 90.4
Nitab4.5_0001750g0060 Nicotiana tabacum HOM05D005994 ORTHO05D007322 1.3e-19 99.0 52 90.4
Peaxi162Scf00955g00216 Petunia axillaris HOM05D005994 ORTHO05D007322 1.3e-19 99.0 52 88.5
Solyc07g065275.1 Solanum lycopersicum HOM05D005994 ORTHO05D007322 1.3e-19 99.0 52 88.5
PGSC0003DMG400022186 Solanum tuberosum HOM05D005994 ORTHO05D007322 1.3e-19 99.0 52 88.5
COL.COLO4_07784 Corchorus olitorius HOM05D005994 ORTHO05D007322 1.8e-19 98.6 52 86.5
CsaV3_1G017030 Cucumis sativus L. HOM05D005994 ORTHO05D007322 1.8e-19 98.6 52 84.6
CsaV3_UNG053450 Cucumis sativus L. HOM05D005994 ORTHO05D007322 1.8e-19 98.6 52 84.6
Oeu005493.1 Olea europaea HOM05D005994 ORTHO05D007322 1.8e-19 98.6 52 88.5
Psat1g178480 Pisum sativum HOM05D005994 ORTHO05D007322 1.8e-19 98.6 52 86.5
VMungo0540G2179 Vigna mungo HOM05D005994 ORTHO05D007322 1.8e-19 98.6 52 84.6
MBI04_g36325_MAGBIO Magnolia biondii HOM05D005994 ORTHO05D007322 2.3e-19 98.2 60 80.0
Oeu005968.1 Olea europaea HOM05D005994 ORTHO05D007322 2.3e-19 98.2 52 86.5
SGA_v2.0_scaffold168G38531 Striga asiatica HOM05D005994 ORTHO05D007322 2.3e-19 98.2 52 88.5
FvH4_3g00660 Fragaria vesca HOM05D005994 ORTHO05D007322 3.0e-19 97.8 52 84.6
FAN25G0933 Fragaria x ananassa HOM05D005994 ORTHO05D007322 3.0e-19 97.8 52 84.6
RcHm_v2.0_Chr5g0000881 Rosa chinensis HOM05D005994 ORTHO05D007322 3.0e-19 97.8 52 84.6
Ah.06g181210 Amaranthus hybridus HOM05D005994 ORTHO05D007322 3.9e-19 97.4 52 84.6
CAN.G337.28 Capsicum annuum HOM05D005994 ORTHO05D007322 3.9e-19 97.4 52 88.5
DCAR_013214 Daucus carota HOM05D005994 ORTHO05D007322 3.9e-19 97.4 56 78.6
Duzib192G0253 Durio zibethinus HOM05D005994 ORTHO05D007322 3.9e-19 97.4 52 84.6
MD10G1336200 Malus domestica HOM05D005994 ORTHO05D007322 3.9e-19 97.4 52 86.5
Nitab4.5_0000461g0100 Nicotiana tabacum HOM05D005994 ORTHO05D007322 3.9e-19 97.4 52 88.5
TPR.G10599 Trifolium pratense HOM05D005994 ORTHO05D007322 3.9e-19 97.4 52 88.5
Eucgr.D00619 Eucalyptus grandis HOM05D005994 ORTHO05D007322 5.1e-19 97.1 52 82.7
arahy.Tifrunner.gnm1.ann1.CR688Y Arachis hypogaea HOM05D005994 ORTHO05D007322 6.7e-19 96.7 52 86.5
arahy.Tifrunner.gnm1.ann1.R43TP7 Arachis hypogaea HOM05D005994 ORTHO05D007322 6.7e-19 96.7 52 86.5
CiPaw.10G079600 Carya illinoinensis HOM05D005994 ORTHO05D007322 6.7e-19 96.7 52 86.5
CDE12G0176 Ceratophyllum demersum HOM05D005994 ORTHO05D007322 6.7e-19 96.7 56 82.1
MBI04_g07210_MAGBIO Magnolia biondii HOM05D005994 ORTHO05D007322 6.7e-19 96.7 56 82.1
PSO832G1566 Papaver somniferum HOM05D005994 ORTHO05D007322 6.7e-19 96.7 56 82.1
Potri.006G016300 Populus trichocarpa HOM05D005994 ORTHO05D007322 6.7e-19 96.7 52 86.5
Sabra06G0011700 Salix brachista HOM05D005994 ORTHO05D007322 6.7e-19 96.7 52 86.5
Sabra16G0013400 Salix brachista HOM05D005994 ORTHO05D007322 6.7e-19 96.7 52 86.5
Sed0000190 Sechium edule HOM05D005994 ORTHO05D007322 6.7e-19 96.7 52 82.7
Hund23128 Selenicereus undatus HOM05D005994 ORTHO05D007322 6.7e-19 96.7 52 86.5
ATR0564G257 Amborella trichopoda HOM05D005994 ORTHO05D007322 8.7e-19 96.3 56 80.4
FAN21G1761 Fragaria x ananassa HOM05D005994 ORTHO05D007322 1.1e-18 95.9 52 82.7
Haze_06972 Corylus avellana HOM05D005994 ORTHO05D007322 1.5e-18 95.5 52 80.8
Manes.09G081660 Manihot esculenta HOM05D005994 ORTHO05D007322 1.5e-18 95.5 52 86.5
Prupe.4G007400 Prunus persica HOM05D005994 ORTHO05D007322 1.5e-18 95.5 52 84.6
PGR004G2260 Punica granatum HOM05D005994 ORTHO05D007322 1.5e-18 95.5 52 86.5
Cc05_g14690 Coffea canephora HOM05D005994 ORTHO05D007322 1.9e-18 95.1 52 84.6
MD00G1058600 Malus domestica HOM05D005994 ORTHO05D007322 1.9e-18 95.1 52 84.6
TWI63G1647 Tripterygium wilfordii HOM05D005994 ORTHO05D007322 1.9e-18 95.1 52 84.6
QL05p068624 Quercus lobata HOM05D005994 ORTHO05D007322 2.5e-18 94.7 52 80.8
QL05p068978 Quercus lobata HOM05D005994 ORTHO05D007322 2.5e-18 94.7 52 80.8
Ah.04g166430 Amaranthus hybridus HOM05D000063 ORTHO05D000906 3.3e-18 94.4 52 82.7
Medtr2g026500 Medicago truncatula HOM05D005994 ORTHO05D007322 3.3e-18 94.4 52 84.6
EL10Ac4g07614 Beta vulgaris HOM05D005994 ORTHO05D007322 4.3e-18 94.0 52 80.8
Ca_00743_v3 Cicer arietinum L. HOM05D005994 ORTHO05D007322 7.4e-18 93.2 52 80.8
GSVIVG01037779001 Vitis vinifera HOM05D005994 ORTHO05D007322 7.4e-18 93.2 56 76.8
CARHR222840 Cardamine hirsuta HOM05D005994 ORTHO05D007322 9.7e-18 92.8 52 82.7
AUR62017059 Chenopodium quinoa HOM05D005994 ORTHO05D007322 1.3e-17 92.4 52 78.8
Aa31LG2G12530 Aethionema arabicum HOM05D005994 ORTHO05D007322 1.6e-17 92.0 52 82.7
Ciclev10016738m.g Citrus clementina HOM05D005994 ORTHO05D007322 2.8e-17 91.3 52 80.8
THA.LOC104810390 Tarenaya hassleriana HOM05D005994 ORTHO05D007322 3.7e-17 90.9 52 82.7
BcaC06g33480 Brassica carinata HOM05D005994 ORTHO05D007322 4.8e-17 90.5 52 78.8
BcaNung00192 Brassica carinata HOM05D005994 ORTHO05D007322 4.8e-17 90.5 52 78.8
A01p21090 Brassica napus HOM05D005994 ORTHO05D007322 4.8e-17 90.5 52 78.8
A03p49850 Brassica napus HOM05D005994 ORTHO05D007322 4.8e-17 90.5 52 78.8
C01p26360 Brassica napus HOM05D005994 ORTHO05D007322 4.8e-17 90.5 52 78.8
C07p47910 Brassica napus HOM05D005994 ORTHO05D007322 4.8e-17 90.5 52 78.8
BolC7t45314H Brassica oleracea HOM05D005994 ORTHO05D007322 4.8e-17 90.5 52 78.8
BraA03t14080Z Brassica rapa HOM05D005994 ORTHO05D007322 4.8e-17 90.5 52 78.8
Sp7g15010 Schrenkiella parvula HOM05D005994 ORTHO05D007322 4.8e-17 90.5 52 78.8
Thhalv10026636m.g Eutrema salsugineum HOM05D005994 ORTHO05D007322 6.3e-17 90.1 52 78.8
Os08g0431500 Oryza sativa ssp. japonica HOM05D005994 ORTHO05D007322 6.3e-17 90.1 52 78.8
AL7G38530 Arabidopsis lyrata HOM05D005994 ORTHO05D007322 8.2e-17 89.7 52 80.8
Carub.0007s2505 Capsella rubella HOM05D005994 ORTHO05D007322 8.2e-17 89.7 52 80.8
Potri.016G009600 Populus trichocarpa HOM05D005994 ORTHO05D007322 1.1e-16 89.4 52 82.7
Cfa000074 Carpinus fangiana HOM05D005994 ORTHO05D007322 1.4e-16 89.0 52 75.0
CDE01G0018 Ceratophyllum demersum HOM05D005994 ORTHO05D007322 1.4e-16 89.0 56 76.8
AUR62040659 Chenopodium quinoa HOM05D005994 ORTHO05D007322 1.4e-16 89.0 52 76.9
BcaC09g50351 Brassica carinata HOM05D005994 ORTHO05D007322 1.8e-16 88.6 52 76.9
BolC1t02582H Brassica oleracea HOM05D005994 ORTHO05D007322 1.8e-16 88.6 52 76.9
Nitab4.5_0000607g0040 Nicotiana tabacum HOM05D006135 ORTHO05D007533 1.8e-16 88.6 56 76.8
AT4G16450 Arabidopsis thaliana HOM05D005994 ORTHO05D007322 6.9e-16 86.7 52 78.8
THA.LOC104815483 Tarenaya hassleriana HOM05D005994 ORTHO05D007322 1.5e-15 85.5 53 79.2
Zm00001eb179550 Zea mays HOM05D005994 ORTHO05D007322 1.5e-15 85.5 52 75.0
Nitab4.5_0005540g0030 Nicotiana tabacum HOM05D005994 ORTHO05D007322 3.4e-15 84.3 52 78.8
Medtr2g097750 Medicago truncatula HOM05D005994 ORTHO05D007322 4.5e-15 84.0 52 76.9
Dinv10313 Davidia involucrata HOM05D005994 ORTHO05D007322 2.2e-14 81.6 52 76.9
Peaxi162Scf00285g00824 Petunia axillaris HOM05D005994 ORTHO05D007322 3.8e-14 80.9 43 86.0
SEGI_25373 Sequoiadendron giganteum HOM05D005994 ORTHO05D007322 1.2e-12 75.9 47 70.2
TAR627G0003 Trochodendron aralioides HOM05D005994 ORTHO05D007322 3.6e-12 74.3 44 79.5
Zm00001eb041720 Zea mays HOM05D005994 ORTHO05D007322 3.0e-11 71.2 51 66.7
Atru.chr1.2350 Acer truncatum HOM05D005994 ORTHO05D007322 8.2e-09 63.2 38 76.3
CBR_g41406 Chara braunii HOM05D005994 ORTHO05D007322 6.5e-06 53.5 47 51.1
SEGI_29999 Sequoiadendron giganteum HOM05D005994 ORTHO05D007322 8.5e-06 53.1 43 55.8


User provided reference genes

Program Settings