Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 2.5e-289 998.0 494 100.0
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 2.7e-142 509.6 497 55.5
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 9.9e-137 491.1 471 56.5
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 4.9e-128 462.2 487 52.4
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.4e-127 459.9 486 54.1
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 5.1e-125 452.2 477 54.5
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 1.9e-124 450.3 491 51.7
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 3.3e-124 449.5 487 51.5
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 9.6e-124 448.0 495 51.7
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 9.6e-124 448.0 487 51.7
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 3.1e-122 443.0 490 51.2
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 5.3e-122 442.2 499 51.5
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 5.8e-121 438.7 465 54.0
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.7e-120 437.2 490 51.0
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.2e-120 436.8 483 50.9
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 9.3e-119 431.4 487 51.3
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 9.3e-119 431.4 488 51.6
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 8.7e-117 424.9 468 50.4
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 1.9e-116 423.7 499 49.3
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 3.3e-116 422.9 478 48.7
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 1.4e-114 417.5 480 47.7
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 3.1e-114 416.4 466 51.1
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 2.0e-113 413.7 478 50.0
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 2.6e-113 413.3 487 50.1
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 1.7e-112 410.6 444 52.9
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 8.4e-112 408.3 463 47.3
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 8.4e-112 408.3 481 48.6
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.1e-111 407.9 441 53.3
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 1.1e-111 407.9 466 48.9
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 1.1e-111 407.9 476 49.6
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 1.9e-111 407.1 492 47.0
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 1.2e-110 404.4 433 52.7
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 1.6e-110 404.1 485 49.7
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 3.5e-110 402.9 476 47.7
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 7.9e-110 401.7 457 50.3
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 1.8e-109 400.6 482 49.0
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 8.7e-109 398.3 468 47.4
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 2.5e-108 396.7 460 49.1
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 2.5e-108 396.7 460 49.1
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 4.3e-108 396.0 479 49.1
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 5.6e-108 395.6 469 49.0
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 5.6e-108 395.6 469 48.4
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 2.1e-107 393.7 472 47.5
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 2.4e-106 390.2 459 47.3
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 3.1e-106 389.8 445 50.8
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 2.6e-105 386.7 472 45.8
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.9e-103 380.6 448 49.6
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 4.6e-102 375.9 468 48.1
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 1.9e-100 370.5 462 46.1
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 1.6e-99 367.5 502 44.8
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 9.0e-98 361.7 461 46.9
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 5.0e-96 355.9 476 45.0
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 8.5e-96 355.1 532 41.2
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 6.5e-88 328.9 394 48.7
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 4.7e-86 322.8 473 40.6
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 5.1e-85 319.3 455 41.5
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 4.4e-84 316.2 474 42.2
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 4.4e-84 316.2 490 40.6
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 1.7e-83 314.3 454 44.5
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.2e-81 308.1 465 39.4
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 1.2e-81 308.1 403 44.2
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 2.4e-74 283.9 460 38.0
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 2.0e-73 280.8 453 37.7
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 4.5e-73 279.6 455 37.4
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.9e-71 274.2 413 39.7
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 3.2e-71 273.5 457 40.7
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 1.4e-69 268.1 475 36.2
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 3.0e-69 266.9 483 36.4
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 2.8e-67 260.4 464 37.3
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 4.8e-67 259.6 421 40.1
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 5.3e-66 256.1 466 38.2
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 1.2e-65 255.0 451 35.3
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 6.5e-64 249.2 452 35.4
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 1.1e-63 248.4 451 35.3
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 1.9e-63 247.7 459 34.0
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 3.2e-63 246.9 460 37.2
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 4.2e-63 246.5 446 35.4
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 7.2e-63 245.7 460 36.7
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 9.4e-63 245.4 396 38.6
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 1.2e-62 245.0 329 45.9
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 3.6e-62 243.4 447 35.6
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 4.7e-62 243.0 371 40.7
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 1.0e-61 241.9 380 38.7
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 4.0e-61 240.0 439 34.4
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 4.4e-60 236.5 448 33.7
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 2.8e-59 233.8 459 34.6
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 8.3e-59 232.3 452 34.5
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 8.3e-59 232.3 452 34.5
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 1.1e-58 231.9 452 34.5
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 1.1e-58 231.9 452 34.5
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 1.1e-58 231.9 380 37.6
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 4.5e-57 226.5 441 33.8
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 5.0e-56 223.0 358 41.6
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 6.6e-56 222.6 208 56.2
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 7.2e-55 219.2 447 33.8
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 3.0e-53 213.8 451 32.6
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.8e-51 207.2 405 33.1
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 4.9e-51 206.5 465 32.9
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 2.4e-50 204.1 436 33.0
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 4.1e-50 203.4 403 33.3
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 9.2e-50 202.2 407 33.9
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.0e-48 198.7 367 34.1
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 1.3e-48 198.4 383 32.6
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.1e-47 195.3 161 61.5
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 2.8e-46 190.7 401 31.7
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 1.8e-45 188.0 384 32.3
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.2e-44 185.3 366 35.2
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 2.0e-44 184.5 142 62.7
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 5.8e-44 183.0 142 62.0
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.4e-42 177.6 371 33.2
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 5.4e-42 176.4 169 52.7
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 7.0e-42 176.0 340 32.9
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 7.0e-42 176.0 371 32.9
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 2.0e-41 174.5 134 61.2
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 6.0e-41 172.9 449 30.3
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 1.0e-40 172.2 446 29.1
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 3.0e-40 170.6 381 32.3
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 3.0e-40 170.6 398 32.9
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 3.3e-39 167.2 252 42.1
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 3.1e-37 160.6 127 60.6
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 3.4e-36 157.1 172 44.8
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 1.3e-35 155.2 99 75.8
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 1.1e-34 152.1 165 49.7
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 5.4e-34 149.8 172 45.9
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 3.9e-32 143.7 177 45.2
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 3.9e-32 143.7 177 45.2
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 5.1e-32 143.3 420 27.9
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 3.3e-31 140.6 149 47.7
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 7.3e-31 139.4 360 30.8
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 9.5e-31 139.0 398 29.6
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 8.1e-30 136.0 423 27.7
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 1.2e-28 132.1 172 40.7
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 5.8e-28 129.8 295 34.6
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 7.5e-28 129.4 306 31.7
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 7.8e-25 119.4 113 51.3
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.9e-23 114.8 129 46.5
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 3.3e-23 114.0 308 27.3
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 8.9e-21 105.9 139 39.6
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 1.2e-17 95.5 107 43.0
Dinv42629 Davidia involucrata HOM05D005167 ORTHO05D006312 3.9e-16 90.5 71 60.6
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.1e-15 89.0 112 42.0
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 2.5e-15 87.8 120 40.0
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 2.5e-15 87.8 180 32.2
Nn2g11162 Nelumbo nucifera HOM05D000080 ORTHO05D000053 2.8e-14 84.3 40 100.0
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 5.8e-12 76.6 56 58.9
ECA232G3819 Erigeron canadensis HOM05D007651 ORTHO05D000898 4.8e-06 57.0 65 43.1
Rhsim04G0168400 Rhododendron simsii HOM05D000018 ORTHO05D008577 4.8e-06 57.0 84 41.7


User provided reference genes

Program Settings