Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 0.0e+00 1361.3 671 100.0
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 2.4e-287 991.9 594 82.2
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 3.2e-247 858.6 641 69.9
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 6.7e-237 824.3 598 70.1
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 8.2e-235 817.4 596 69.6
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 1.1e-228 797.0 595 67.7
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 1.3e-227 793.5 613 66.6
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 2.8e-227 792.3 595 66.4
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 2.2e-224 782.7 601 65.4
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 3.8e-224 781.9 595 65.2
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 1.9e-223 779.6 601 65.1
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 1.9e-223 779.6 592 66.6
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 7.2e-223 777.7 595 65.2
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 1.2e-222 776.9 590 65.6
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 1.6e-222 776.5 603 63.8
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 6.1e-222 774.6 602 65.0
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 1.0e-221 773.9 671 60.1
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 2.3e-221 772.7 592 65.9
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 1.1e-220 770.4 592 65.5
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 1.5e-220 770.0 597 65.3
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 9.7e-220 767.3 592 65.5
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 1.7e-219 766.5 592 65.2
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.1e-218 763.8 593 65.1
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 1.4e-218 763.5 592 63.2
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 1.5e-217 760.0 597 65.2
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 3.4e-217 758.8 601 62.2
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 1.3e-216 756.9 644 60.9
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 2.9e-216 755.7 594 65.7
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 3.8e-216 755.4 599 63.3
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 6.5e-216 754.6 594 63.3
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 4.2e-215 751.9 604 62.3
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 7.2e-215 751.1 599 63.1
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 9.4e-215 750.7 622 63.0
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 1.2e-214 750.4 599 61.6
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 4.7e-214 748.4 665 57.9
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 6.1e-214 748.0 599 62.6
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 1.0e-213 747.3 599 62.6
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.4e-213 746.9 594 64.0
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 1.4e-213 746.9 595 63.9
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 1.8e-213 746.5 590 63.9
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 2.3e-213 746.1 595 63.5
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 8.8e-213 744.2 596 62.4
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 1.5e-212 743.4 593 62.9
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 1.8e-210 736.5 598 62.4
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 5.3e-210 734.9 593 61.6
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 2.0e-209 733.0 611 60.9
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 3.5e-209 732.3 602 61.3
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 2.9e-208 729.2 594 61.4
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 4.2e-207 725.3 595 61.8
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 4.2e-207 725.3 599 62.1
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 2.7e-206 722.6 591 61.8
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 3.6e-206 722.2 597 61.8
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 4.7e-206 721.8 595 61.0
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 1.0e-205 720.7 590 60.5
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 5.2e-205 718.4 597 61.6
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 5.2e-205 718.4 594 61.3
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 6.7e-205 718.0 593 60.9
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 8.8e-205 717.6 590 60.8
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 8.8e-205 717.6 591 61.4
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 8.8e-205 717.6 629 57.7
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 1.5e-204 716.8 594 61.4
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 1.3e-203 713.8 595 62.7
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 4.8e-203 711.8 532 67.9
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 4.1e-202 708.8 593 60.2
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 7.0e-202 708.0 604 58.1
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 5.9e-201 704.9 599 61.1
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 7.7e-201 704.5 597 61.3
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 1.3e-200 703.7 588 60.0
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 2.9e-200 702.6 592 58.6
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 3.8e-200 702.2 590 60.3
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 3.2e-199 699.1 598 59.0
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 5.5e-199 698.4 593 61.2
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 5.5e-199 698.4 596 60.6
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 7.2e-199 698.0 617 58.5
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 1.8e-197 693.3 594 59.4
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 5.2e-197 691.8 597 59.5
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 6.8e-197 691.4 593 60.2
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 7.5e-196 688.0 596 59.2
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 2.2e-195 686.4 592 59.6
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 8.3e-195 684.5 597 60.0
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 2.4e-194 682.9 604 58.9
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 5.4e-194 681.8 593 59.7
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 9.1e-194 681.0 561 62.0
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 2.7e-193 679.5 599 58.8
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 2.7e-193 679.5 594 57.4
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 3.5e-193 679.1 593 59.2
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 7.7e-193 677.9 596 59.4
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 7.7e-193 677.9 596 59.4
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 1.0e-192 677.6 556 61.3
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 5.0e-192 675.2 601 58.9
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 5.5e-191 671.8 592 56.9
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 2.1e-190 669.8 595 58.0
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 1.8e-189 666.8 555 62.0
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 5.2e-189 665.2 578 60.2
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 1.0e-184 651.0 595 57.3
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 3.3e-183 646.0 606 55.9
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 2.8e-182 642.9 596 56.4
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 4.9e-179 632.1 600 54.7
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 3.2e-178 629.4 598 56.0
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 4.6e-177 625.5 504 64.9
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 6.8e-173 611.7 601 53.7
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 5.4e-170 602.1 590 54.1
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 8.9e-165 584.7 419 71.8
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 9.2e-162 574.7 600 50.2
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 1.6e-161 573.9 625 50.6
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 1.1e-157 561.2 526 57.4
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 2.0e-156 557.0 527 56.7
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-154 548.9 521 57.2
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 4.7e-150 535.8 443 63.0
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 9.3e-146 521.5 468 58.1
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 6.9e-141 505.4 550 52.9
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 3.8e-131 473.0 599 44.1
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 3.1e-125 453.4 574 44.6
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 4.2e-122 443.0 591 43.3
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 1.5e-119 434.5 396 58.3
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 1.3e-118 431.4 305 71.1
TAR636G0335 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.2e-118 430.6 278 77.7
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 2.5e-111 407.1 586 41.8
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 2.2e-110 404.1 615 38.9
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 4.5e-100 369.8 410 52.2
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 3.8e-99 366.7 627 38.3
Peaxi162Scf00739g00014 Petunia axillaris HOM05D004766 ORTHO05D006159 8.8e-96 355.5 248 70.2
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 1.8e-93 347.8 332 57.8
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 1.6e-76 291.6 609 32.5
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 2.9e-75 287.3 465 42.4
Solyc06g050200.2 Solanum lycopersicum HOM05D004766 ORTHO05D006159 2.6e-71 274.2 251 58.6
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 5.9e-68 263.1 407 40.5
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 4.1e-61 240.4 282 50.0
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 5.2e-56 223.4 131 71.8
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 5.4e-53 213.4 281 42.0
BcaC02g12598 Brassica carinata HOM05D004766 ORTHO05D006159 7.1e-53 213.0 165 64.8
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 2.4e-45 188.0 575 29.2
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 3.5e-44 184.1 130 59.2
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 3.1e-40 171.0 288 37.2
BolC4t21721H Brassica oleracea HOM05D004766 ORTHO05D006159 2.4e-37 161.4 134 59.7
A05p01790 Brassica napus HOM05D004766 ORTHO05D006159 9.3e-37 159.5 126 64.3
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 4.0e-32 144.1 386 32.1
BraA05t19176Z Brassica rapa HOM05D004766 ORTHO05D006159 5.8e-31 140.2 114 63.2
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 2.1e-28 131.7 94 60.6
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 1.0e-27 129.4 140 42.9
Nn1g07504 Nelumbo nucifera HOM05D004766 ORTHO05D006159 8.7e-27 126.3 87 72.4
Cre01.g030150 Chlamydomonas reinhardtii HOM05D004766 ORTHO05D006159 4.8e-25 120.6 899 22.7
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 7.6e-23 113.2 78 64.1
MBI11_g31297_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D000022 6.0e-20 103.6 154 43.5
AagrBONN_evm.TU.Sc2ySwM_336.9 Anthoceros agrestis HOM05D004766 ORTHO05D006159 1.1e-13 82.8 88 43.2
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 2.5e-13 81.6 55 63.6
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 3.5e-12 77.8 42 76.2
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 3.5e-12 77.8 42 76.2
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 1.3e-11 75.9 41 75.6
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 2.3e-11 75.1 41 75.6
C07p45160 Brassica napus HOM05D004766 ORTHO05D033383 1.1e-10 72.8 41 73.2
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 1.1e-10 72.8 41 73.2
Peaxi162Scf00041g01211 Petunia axillaris HOM05D004766 ORTHO05D006159 1.5e-10 72.4 105 39.0
SHI28880 Sapria himalayana HOM05D004766 ORTHO05D006159 3.3e-10 71.2 57 56.1


User provided reference genes

Program Settings