Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 1.0e-166 590.1 309 100.0
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 1.5e-77 293.9 337 54.6
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 6.5e-65 251.9 340 46.8
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 1.0e-62 244.6 329 48.3
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 1.1e-56 224.6 208 58.2
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 6.1e-55 218.8 202 57.4
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 1.8e-54 217.2 328 47.3
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 1.4e-51 207.6 318 46.5
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 3.1e-51 206.5 313 43.1
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 1.6e-50 204.1 217 50.7
Nn1g02337 Nelumbo nucifera HOM05D003589 ORTHO05D005170 2.7e-50 203.4 120 86.7
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 3.5e-50 203.0 211 51.2
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 4.5e-50 202.6 316 41.5
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 7.7e-50 201.8 275 44.4
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 2.2e-49 200.3 386 38.3
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.9e-48 197.2 264 45.5
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 5.5e-48 195.7 329 40.4
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 7.2e-48 195.3 352 38.1
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 3.6e-47 193.0 227 48.5
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 4.0e-46 189.5 315 45.1
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 4.0e-46 189.5 387 36.7
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 6.8e-46 188.7 249 45.4
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 6.8e-46 188.7 254 45.3
Nn2g10296 Nelumbo nucifera HOM05D003589 ORTHO05D005170 8.8e-46 188.3 180 58.9
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.6e-45 186.8 383 37.6
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 5.7e-45 185.7 339 38.9
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 9.8e-45 184.9 383 37.3
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 2.2e-44 183.7 320 42.8
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 2.2e-44 183.7 324 42.0
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 2.8e-44 183.3 207 50.7
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 8.3e-44 181.8 228 46.5
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 1.8e-43 180.6 216 48.1
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 4.1e-43 179.5 220 49.5
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 5.4e-43 179.1 280 40.0
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 7.0e-43 178.7 253 44.3
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 9.2e-43 178.3 303 41.3
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 9.2e-43 178.3 350 38.9
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.2e-42 177.9 303 41.9
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 2.7e-42 176.8 383 37.1
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 2.3e-41 173.7 233 48.5
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 5.0e-41 172.6 179 52.0
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 6.6e-41 172.2 330 39.1
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 5.6e-40 169.1 184 51.6
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 2.1e-39 167.2 234 45.7
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 8.0e-39 165.2 232 44.4
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 1.0e-38 164.9 391 36.1
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 1.0e-38 164.9 214 43.9
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 2.3e-38 163.7 338 37.3
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 2.3e-38 163.7 277 39.7
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 8.9e-38 161.8 219 43.8
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 8.9e-38 161.8 203 45.8
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 8.9e-38 161.8 210 48.1
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 1.5e-37 161.0 220 40.0
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 2.0e-37 160.6 236 46.6
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 3.4e-37 159.8 271 39.9
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 5.7e-37 159.1 277 40.1
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.7e-36 157.5 252 45.6
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.7e-36 157.5 252 45.6
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.7e-36 157.5 252 45.6
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 1.7e-36 157.5 319 37.9
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 3.7e-36 156.4 201 45.8
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 6.4e-36 155.6 282 42.2
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 8.3e-36 155.2 250 39.2
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 1.1e-35 154.8 256 41.0
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 1.4e-35 154.5 350 35.7
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 3.2e-35 153.3 282 41.5
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 4.1e-35 152.9 351 35.6
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 5.4e-35 152.5 216 42.1
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 7.0e-35 152.1 226 40.3
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 7.0e-35 152.1 201 44.8
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 1.6e-34 151.0 272 35.7
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 2.0e-34 150.6 240 42.1
Carub.0005s1794 Capsella rubella HOM05D003589 ORTHO05D005170 2.7e-34 150.2 278 39.2
Sp5g10690 Schrenkiella parvula HOM05D003589 ORTHO05D005170 2.7e-34 150.2 212 42.9
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 2.7e-34 150.2 262 39.3
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 4.6e-34 149.4 266 44.0
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 5.9e-34 149.1 188 51.1
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 7.8e-34 148.7 271 39.1
VMungo1383G2329 Vigna mungo HOM05D003589 ORTHO05D005170 1.7e-33 147.5 334 33.5
MSTRG.5498 Avicennia marina HOM05D003589 ORTHO05D005170 2.3e-33 147.1 321 33.0
Peaxi162Scf00167g01218 Petunia axillaris HOM05D003589 ORTHO05D005170 3.0e-33 146.7 233 39.9
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 3.9e-33 146.4 273 38.5
AL5G32020 Arabidopsis lyrata HOM05D003589 ORTHO05D005170 3.9e-33 146.4 278 38.1
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 3.9e-33 146.4 240 39.6
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 6.6e-33 145.6 277 36.5
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 1.1e-32 144.8 265 41.1
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 1.5e-32 144.4 373 32.2
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 3.3e-32 143.3 186 52.2
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 4.3e-32 142.9 224 42.0
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 9.5e-32 141.7 200 45.5
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 1.2e-31 141.4 306 36.3
Thhalv10010441m.g Eutrema salsugineum HOM05D003589 ORTHO05D005170 1.2e-31 141.4 385 33.0
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 1.2e-31 141.4 143 52.4
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 1.6e-31 141.0 184 46.7
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 1.6e-31 141.0 249 40.2
CARHR161170 Cardamine hirsuta HOM05D003589 ORTHO05D005170 2.8e-31 140.2 233 40.8
HPP92_015592 Vanilla planifolia HOM05D003589 ORTHO05D005170 6.2e-31 139.0 280 36.4
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 8.0e-31 138.7 153 51.6
Lj8A54T74 Lonicera japonica HOM05D003589 ORTHO05D005170 1.0e-30 138.3 211 44.5
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 1.4e-30 137.9 212 39.2
AT3G51580 Arabidopsis thaliana HOM05D003589 ORTHO05D005170 1.8e-30 137.5 289 35.3
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 2.3e-30 137.1 198 47.5
BraA03t13942Z Brassica rapa HOM05D003589 ORTHO05D005170 4.0e-30 136.3 232 40.1
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 8.9e-30 135.2 361 31.3
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 8.9e-30 135.2 286 33.2
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.2e-29 134.8 199 46.2
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 1.2e-29 134.8 209 39.7
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 2.0e-29 134.0 245 38.8
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 2.6e-29 133.7 331 33.5
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 4.4e-29 132.9 332 34.3
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 5.8e-29 132.5 319 36.1
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 7.5e-29 132.1 178 44.4
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 1.7e-28 131.0 414 29.7
BcaC06g33027 Brassica carinata HOM05D003589 ORTHO05D005170 6.4e-28 129.0 252 38.5
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 1.1e-27 128.3 182 42.3
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 1.1e-27 128.3 274 36.1
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 1.1e-27 128.3 127 54.3
Duzib114G0452 Durio zibethinus HOM05D003589 ORTHO05D005170 1.9e-27 127.5 177 40.7
Eucgr.G03139 Eucalyptus grandis HOM05D003589 ORTHO05D005170 2.4e-27 127.1 282 36.5
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 2.4e-27 127.1 322 33.2
MSTRG.169 Avicennia marina HOM05D003589 ORTHO05D005170 4.1e-27 126.3 212 37.7
Nitab4.5_0000375g0230 Nicotiana tabacum HOM05D003589 ORTHO05D005170 5.4e-27 125.9 249 36.9
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 7.0e-27 125.6 195 44.1
Migut.F01242 Erythranthe guttata HOM05D003589 ORTHO05D005170 9.2e-27 125.2 218 37.2
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 1.6e-26 124.4 176 40.3
PGSC0003DMG400011643 Solanum tuberosum HOM05D003589 ORTHO05D005170 1.6e-26 124.4 244 37.7
BolC7t45155H Brassica oleracea HOM05D003589 ORTHO05D005170 2.0e-26 124.0 285 35.8
HanXRQChr10g0287531 Helianthus annuus HOM05D003589 ORTHO05D005170 3.5e-26 123.2 436 28.2
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 3.5e-26 123.2 248 37.1
Oeu006056.1 Olea europaea HOM05D003589 ORTHO05D005170 1.7e-25 120.9 161 45.3
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 3.0e-25 120.2 186 39.8
DCAR_018039 Daucus carota HOM05D003589 ORTHO05D005170 3.9e-25 119.8 200 44.0
Lsat_1_v5_gn_9_38921 Lactuca sativa HOM05D003589 ORTHO05D005170 3.9e-25 119.8 386 27.5
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 3.9e-25 119.8 232 35.3
DCAR_014664 Daucus carota HOM05D003589 ORTHO05D005170 1.1e-24 118.2 173 38.2
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 3.3e-24 116.7 142 47.9
Os05g0478200 Oryza sativa ssp. japonica HOM05D003589 ORTHO05D005170 7.3e-24 115.5 207 38.2
unitig_578.g15914 Utricularia gibba HOM05D003589 ORTHO05D005170 2.6e-21 107.1 349 29.8
COL.COLO4_19418 Corchorus olitorius HOM05D003589 ORTHO05D005170 3.4e-21 106.7 186 34.9
Zm00001eb352040 Zea mays HOM05D003589 ORTHO05D005170 4.4e-21 106.3 215 36.3
Oeu060212.1 Olea europaea HOM05D003589 ORTHO05D005170 1.7e-20 104.4 99 58.6
ECA247G3378 Erigeron canadensis HOM05D000259 ORTHO05D000155 2.9e-20 103.6 111 48.6
Gohir.D04G012700 Gossypium hirsutum HOM05D003589 ORTHO05D005170 6.4e-20 102.4 221 33.5
Oeu044185.1 Olea europaea HOM05D003589 ORTHO05D005170 6.4e-20 102.4 105 54.3
Gorai.012G015000 Gossypium raimondii HOM05D003589 ORTHO05D005170 8.3e-20 102.1 220 32.7
Lsat_1_v5_gn_2_126280 Lactuca sativa HOM05D003589 ORTHO05D005170 1.1e-19 101.7 222 33.3
CDE04G2629 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 1.9e-19 100.9 314 33.8
SalBow5G5138 Salvia bowleyana HOM05D003589 ORTHO05D005170 1.9e-19 100.9 255 33.3
ATR0188G013 Amborella trichopoda HOM05D007666 ORTHO05D009567 9.2e-19 98.6 256 34.4
Gohir.A05G402800 Gossypium hirsutum HOM05D003589 ORTHO05D005170 1.2e-18 98.2 190 36.8
Sabra19G0073800 Salix brachista HOM05D003589 ORTHO05D005170 2.1e-18 97.4 183 41.5
CDE04G3060 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 2.3e-17 94.0 316 32.6
Potri.003G139400 Populus trichocarpa HOM05D007666 ORTHO05D009567 8.6e-17 92.0 194 30.4
Zm00001eb290650 Zea mays HOM05D003589 ORTHO05D005170 8.6e-17 92.0 214 33.2
ECA238G2532 Erigeron canadensis HOM05D003589 ORTHO05D005170 1.9e-16 90.9 226 35.8
Rhsim02G0242700 Rhododendron simsii HOM05D007666 ORTHO05D009567 1.4e-14 84.7 204 35.3
Ah.07g197340 Amaranthus hybridus HOM05D007666 ORTHO05D009567 3.1e-14 83.6 194 33.5
CSS0011760 Camellia sinensis var. sinensis HOM05D007666 ORTHO05D009567 2.0e-13 80.9 258 27.1
HanXRQChr07g0204121 Helianthus annuus HOM05D003589 ORTHO05D005170 2.0e-13 80.9 207 36.2
Thecc.03G296800 Theobroma cacao HOM05D007666 ORTHO05D009567 2.0e-13 80.9 190 30.0
SalBow1G7426 Salvia bowleyana HOM05D007666 ORTHO05D009567 5.8e-13 79.3 211 29.9
QL02p030815 Quercus lobata HOM05D007666 ORTHO05D009567 9.9e-13 78.6 228 28.9
Aqoxy5G04207 Aquilegia oxysepala HOM05D007666 ORTHO05D009567 4.9e-12 76.3 231 28.1
Gohir.A09G190500 Gossypium hirsutum HOM05D007666 ORTHO05D009567 1.1e-11 75.1 189 29.6
CsaV3_4G006520 Cucumis sativus L. HOM05D007666 ORTHO05D009567 1.2e-10 71.6 180 27.8
Nitab4.5_0005537g0030 Nicotiana tabacum HOM05D007666 ORTHO05D009567 7.8e-10 68.9 213 30.5
Nitab4.5_0001231g0060 Nicotiana tabacum HOM05D007666 ORTHO05D009567 1.0e-09 68.6 213 30.0
TWI60G1340 Tripterygium wilfordii HOM05D007666 ORTHO05D009567 1.0e-09 68.6 211 29.4
MELO3C016286.2 Cucumis melo HOM05D007666 ORTHO05D009567 1.7e-09 67.8 205 26.3
Sed0008321 Sechium edule HOM05D007666 ORTHO05D009567 3.0e-09 67.0 216 26.4
Zm00001eb344230 Zea mays HOM05D007666 ORTHO05D009567 5.2e-06 56.2 240 30.8


User provided reference genes

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