Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 1.4e-251 872.5 433 100.0
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 1.4e-203 713.0 432 80.1
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 1.1e-200 703.4 430 77.9
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 8.8e-198 693.7 430 77.7
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 1.7e-196 689.5 432 76.4
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 1.3e-193 679.9 428 76.2
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 6.1e-191 671.0 432 75.7
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 5.2e-190 667.9 432 74.3
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 6.7e-190 667.5 430 75.1
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 3.3e-189 665.2 432 75.2
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 1.1e-187 660.2 432 74.8
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 1.8e-187 659.4 432 72.5
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 7.0e-187 657.5 430 74.2
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 7.0e-187 657.5 432 74.5
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 9.1e-187 657.1 430 72.1
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 3.5e-186 655.2 429 74.6
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 4.5e-186 654.8 432 72.9
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 7.7e-186 654.1 432 74.1
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 5.0e-185 651.4 430 73.7
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 5.0e-185 651.4 432 72.5
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 8.5e-185 650.6 430 73.0
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 1.9e-184 649.4 430 73.0
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 5.5e-184 647.9 430 72.3
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 7.2e-184 647.5 432 72.0
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 1.6e-183 646.4 432 70.1
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 2.7e-183 645.6 432 71.8
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 8.0e-183 644.0 432 71.8
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 1.0e-182 643.7 430 71.9
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.8e-182 642.9 429 72.0
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 1.8e-182 642.9 432 70.8
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 2.3e-182 642.5 432 70.8
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 3.0e-182 642.1 431 71.7
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 3.0e-182 642.1 456 69.7
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 4.0e-182 641.7 468 67.7
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 8.8e-182 640.6 430 71.9
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 1.2e-181 640.2 431 71.2
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 1.5e-181 639.8 432 69.9
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 2.6e-181 639.0 432 69.9
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 2.6e-181 639.0 436 70.2
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 2.6e-181 639.0 432 69.9
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 4.8e-180 634.8 432 69.4
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 1.1e-179 633.6 432 70.6
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 2.4e-179 632.5 433 71.6
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 3.1e-179 632.1 430 70.2
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 1.2e-178 630.2 430 70.7
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 1.6e-178 629.8 429 70.4
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 1.6e-178 629.8 430 71.4
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 2.7e-178 629.0 432 69.4
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 1.0e-177 627.1 426 70.0
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 3.8e-177 625.2 433 69.3
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 8.6e-177 624.0 430 70.7
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 1.1e-176 623.6 429 70.2
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 2.5e-176 622.5 433 69.5
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 4.2e-176 621.7 428 69.2
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 5.5e-176 621.3 446 69.1
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 8.0e-175 617.5 432 70.8
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 1.0e-174 617.1 433 69.3
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 3.0e-174 615.5 432 70.8
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 8.9e-174 614.0 432 70.4
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 8.9e-174 614.0 434 68.9
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 8.3e-172 607.4 430 68.6
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 1.4e-171 606.7 433 68.8
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 1.2e-170 603.6 430 68.6
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 1.6e-170 603.2 430 68.8
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 2.0e-170 602.8 433 68.1
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 3.5e-170 602.1 433 68.8
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 5.0e-169 598.2 433 68.4
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 6.6e-169 597.8 430 67.9
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 6.6e-169 597.8 434 67.7
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 8.6e-169 597.4 510 60.4
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 1.2e-167 593.6 430 67.7
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 1.6e-167 593.2 430 69.3
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 2.1e-167 592.8 381 76.1
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 2.8e-167 592.4 520 58.5
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 6.1e-167 591.3 431 67.5
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 1.2e-165 587.0 416 69.2
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 9.8e-165 583.9 443 65.9
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 1.7e-164 583.2 475 62.9
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 8.3e-164 580.9 429 64.6
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 5.4e-163 578.2 429 66.9
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 6.0e-162 574.7 416 67.8
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 1.0e-161 573.9 435 66.0
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 5.0e-161 571.6 474 61.2
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 2.5e-160 569.3 430 66.5
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 1.2e-159 567.0 430 65.6
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 2.3e-158 562.8 362 75.4
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 1.3e-156 557.0 473 60.7
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 4.6e-154 548.5 421 65.1
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 1.0e-153 547.4 432 64.8
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 1.8e-150 536.6 379 68.3
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 6.4e-148 528.1 376 68.9
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 7.1e-147 524.6 432 62.3
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 9.5e-144 514.2 380 66.8
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 2.8e-143 512.7 433 59.4
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 6.2e-143 511.5 728 41.8
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 8.1e-143 511.1 380 66.6
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 8.9e-142 507.7 450 59.6
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 1.7e-140 503.4 692 43.1
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 1.1e-139 500.7 438 56.6
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 1.9e-139 500.0 420 61.2
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 1.3e-135 487.3 362 66.9
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 1.7e-129 466.8 431 53.6
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 1.9e-123 446.8 300 71.3
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 7.9e-122 441.4 432 50.7
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 6.2e-119 431.8 319 66.8
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 1.4e-115 420.6 295 69.8
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 1.6e-114 417.2 343 62.7
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 1.8e-113 413.7 341 61.6
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 1.3e-105 387.5 435 47.8
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 3.6e-98 362.8 350 52.0
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 2.6e-93 346.7 248 69.8
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 8.8e-89 331.6 223 74.9
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 2.6e-88 330.1 219 71.2
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 2.4e-70 270.4 236 62.3
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 1.6e-66 257.7 161 77.0
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 3.7e-63 246.5 430 34.4
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 1.8e-62 244.2 429 38.7
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 3.1e-62 243.4 280 49.6
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 9.1e-62 241.9 212 62.3
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 1.2e-56 224.9 130 81.5
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 1.3e-52 211.5 142 69.0
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 5.0e-52 209.5 159 62.9
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 6.6e-52 209.1 133 74.4
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 2.0e-45 187.6 140 65.7
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.0e-45 187.6 149 58.4
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 1.3e-44 184.9 319 34.5
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 9.5e-35 152.1 200 44.5
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 6.2e-34 149.4 193 45.1
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.2e-31 141.0 120 60.8
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 9.9e-24 115.5 97 52.6
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 1.4e-22 111.7 146 46.6
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 1.5e-19 101.7 78 59.0
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 1.8e-17 94.7 82 50.0
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 2.4e-17 94.4 52 76.9
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 5.4e-14 83.2 68 57.4
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 7.9e-13 79.3 68 55.9
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 5.1e-12 76.6 68 54.4
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 9.6e-11 72.4 46 69.6
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 1.3e-10 72.0 43 81.4
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 1.8e-09 68.2 50 66.0
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 6.9e-09 66.2 44 61.4
RcHm_v2.0_Chr2g0163341 Rosa chinensis HOM05D005218 ORTHO05D006657 1.7e-07 61.6 39 76.9
CDE07G1760 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 2.2e-07 61.2 51 56.9


User provided reference genes

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