Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g26622 Nelumbo nucifera HOM05D006325 ORTHO05D007878 2.0e-20 102.1 53 100.0
Nn3g20453 Nelumbo nucifera HOM05D006325 ORTHO05D007878 1.6e-12 75.9 54 74.1
ClCG01G024840 Citrullus lanatus HOM05D006325 ORTHO05D007878 1.5e-10 69.3 52 65.4
MELO3C007112.2 Cucumis melo HOM05D006325 ORTHO05D007878 4.3e-10 67.8 52 61.5
CsaV3_6G051960 Cucumis sativus L. HOM05D006325 ORTHO05D007878 5.6e-10 67.4 52 61.5
CSS0005985 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 2.1e-09 65.5 50 66.0
CSS0005499 Camellia sinensis var. sinensis HOM05D006325 ORTHO05D007878 3.6e-09 64.7 50 66.0
QL05p055432 Quercus lobata HOM05D006325 ORTHO05D007878 3.6e-09 64.7 52 59.6
Sed0008419 Sechium edule HOM05D006325 ORTHO05D007878 4.7e-09 64.3 47 63.8
CAN.G160.10 Capsicum annuum HOM05D006325 ORTHO05D007878 1.0e-08 63.2 52 63.5
CAN.G160.12 Capsicum annuum HOM05D006325 ORTHO05D007878 1.0e-08 63.2 52 63.5
CAN.G2122.1 Capsicum annuum HOM05D006325 ORTHO05D007878 1.0e-08 63.2 52 63.5
MBI02_g07020_MAGBIO Magnolia biondii HOM05D006325 ORTHO05D007878 1.0e-08 63.2 51 64.7
Nitab4.5_0003551g0110 Nicotiana tabacum HOM05D006325 ORTHO05D007878 1.4e-08 62.8 52 63.5
PGSC0003DMG403011204 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.4e-08 62.8 52 63.5
DCAR_007876 Daucus carota HOM05D006325 ORTHO05D007878 1.8e-08 62.4 44 68.2
PGSC0003DMG400011149 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.8e-08 62.4 52 63.5
Thecc.06G145500 Theobroma cacao HOM05D006325 ORTHO05D007878 3.1e-08 61.6 52 61.5
Ciclev10017179m.g Citrus clementina HOM05D006325 ORTHO05D007878 4.0e-08 61.2 53 54.7
Nitab4.5_0002611g0130 Nicotiana tabacum HOM05D006325 ORTHO05D007878 4.0e-08 61.2 52 61.5
BcaC06g35496 Brassica carinata HOM05D006325 ORTHO05D007878 5.2e-08 60.8 50 62.0
A07p10030 Brassica napus HOM05D006325 ORTHO05D007878 5.2e-08 60.8 50 62.0
BolC7t42032H Brassica oleracea HOM05D006325 ORTHO05D007878 5.2e-08 60.8 50 62.0
BraA07t28796Z Brassica rapa HOM05D006325 ORTHO05D007878 5.2e-08 60.8 50 62.0
CANSAT35G0285 Cannabis sativa HOM05D006325 ORTHO05D007878 5.2e-08 60.8 52 61.5
PGSC0003DMG402022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 5.2e-08 60.8 52 61.5
BcaB03g13839 Brassica carinata HOM05D006325 ORTHO05D007878 6.8e-08 60.5 50 62.0
CAN.G160.11 Capsicum annuum HOM05D006325 ORTHO05D007878 6.8e-08 60.5 52 61.5
MD10G1258900 Malus domestica HOM05D006325 ORTHO05D007878 6.8e-08 60.5 52 63.5
AL1G44210 Arabidopsis lyrata HOM05D006325 ORTHO05D007878 8.9e-08 60.1 54 59.3
BcaB07g32625 Brassica carinata HOM05D006325 ORTHO05D007878 1.2e-07 59.7 50 62.0
Prupe.4G084800 Prunus persica HOM05D006325 ORTHO05D007878 1.2e-07 59.7 52 61.5
PGSC0003DMG401022984 Solanum tuberosum HOM05D006325 ORTHO05D007878 1.2e-07 59.7 50 62.0
A09p36260 Brassica napus HOM05D006325 ORTHO05D007878 1.5e-07 59.3 50 60.0
Thhalv10009295m.g Eutrema salsugineum HOM05D006325 ORTHO05D007878 1.5e-07 59.3 50 62.0
Hma1.2p1_0594F.1_g185940 Hydrangea macrophylla HOM05D006325 ORTHO05D007878 1.5e-07 59.3 52 57.7
RcHm_v2.0_Chr5g0014631 Rosa chinensis HOM05D006325 ORTHO05D007878 1.5e-07 59.3 55 56.4
Solyc11g020860.1 Solanum lycopersicum HOM05D006325 ORTHO05D007878 1.5e-07 59.3 52 63.5
Carub.0001s2849 Capsella rubella HOM05D006325 ORTHO05D007878 2.0e-07 58.9 45 64.4
Ciclev10026747m.g Citrus clementina HOM05D006325 ORTHO05D007878 2.0e-07 58.9 53 56.6
FvH4_3g05130 Fragaria vesca HOM05D006325 ORTHO05D007878 2.0e-07 58.9 50 60.0
FAN11G2857 Fragaria x ananassa HOM05D006325 ORTHO05D007878 2.0e-07 58.9 50 60.0
Sopen11g011030 Solanum pennellii HOM05D006325 ORTHO05D007878 2.0e-07 58.9 50 64.0
TWI09G0296 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 2.0e-07 58.9 50 60.0
AT1G30260 Arabidopsis thaliana HOM05D006325 ORTHO05D007878 2.6e-07 58.5 53 60.4
BcaC05g27053 Brassica carinata HOM05D006325 ORTHO05D007878 2.6e-07 58.5 50 60.0
C05p29100 Brassica napus HOM05D006325 ORTHO05D007878 2.6e-07 58.5 50 60.0
BolC5t31641H Brassica oleracea HOM05D006325 ORTHO05D007878 2.6e-07 58.5 50 60.0
BraA09t39151Z Brassica rapa HOM05D006325 ORTHO05D007878 2.6e-07 58.5 50 60.0
FAN21G1261 Fragaria x ananassa HOM05D006325 ORTHO05D007878 2.6e-07 58.5 39 71.8
FAN25G3009 Fragaria x ananassa HOM05D006325 ORTHO05D007878 2.6e-07 58.5 39 71.8
Sp1g26100 Schrenkiella parvula HOM05D006325 ORTHO05D007878 2.6e-07 58.5 50 60.0
Nitab4.5_0003551g0100 Nicotiana tabacum HOM05D006325 ORTHO05D007878 3.4e-07 58.2 52 59.6
Ciclev10026858m.g Citrus clementina HOM05D006325 ORTHO05D007878 5.8e-07 57.4 53 56.6
Glyma.08G099000 Glycine max HOM05D006325 ORTHO05D007878 5.8e-07 57.4 52 53.8
PGSC0003DMG400009263 Solanum tuberosum HOM05D006325 ORTHO05D007878 5.8e-07 57.4 50 60.0
Aa31LG6G5500 Aethionema arabicum HOM05D006325 ORTHO05D007878 7.5e-07 57.0 40 70.0
CiPaw.09G120800 Carya illinoinensis HOM05D006325 ORTHO05D007878 7.5e-07 57.0 49 55.1
Lsat_1_v5_gn_7_27621 Lactuca sativa HOM05D006325 ORTHO05D007878 7.5e-07 57.0 44 63.6
CAN.G2122.2 Capsicum annuum HOM05D006325 ORTHO05D007878 9.8e-07 56.6 48 60.4
CiPaw.10G089300 Carya illinoinensis HOM05D006325 ORTHO05D007878 9.8e-07 56.6 52 53.8
Lsat_1_v5_gn_0_34220 Lactuca sativa HOM05D006325 ORTHO05D007878 9.8e-07 56.6 48 62.5
CARHR029650 Cardamine hirsuta HOM05D006325 ORTHO05D007878 1.3e-06 56.2 49 57.1
Cc00_g01980 Coffea canephora HOM05D006325 ORTHO05D007878 1.3e-06 56.2 45 60.0
Sopen07g002010 Solanum pennellii HOM05D006325 ORTHO05D007878 1.3e-06 56.2 54 59.3
Duzib192G0952 Durio zibethinus HOM05D006325 ORTHO05D007878 1.7e-06 55.8 52 55.8
FAN16G1041 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.7e-06 55.8 39 69.2
FAN16G2667 Fragaria x ananassa HOM05D006325 ORTHO05D007878 1.7e-06 55.8 39 69.2
Sabra11G0064500 Salix brachista HOM05D006325 ORTHO05D007878 1.7e-06 55.8 44 56.8
Gohir.A05G146600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 2.2e-06 55.5 53 52.8
Gohir.D05G149100 Gossypium hirsutum HOM05D006325 ORTHO05D007878 2.2e-06 55.5 53 52.8
Gorai.009G153100 Gossypium raimondii HOM05D006325 ORTHO05D007878 2.2e-06 55.5 53 52.8
PSO541G2396 Papaver somniferum HOM05D006325 ORTHO05D007878 2.2e-06 55.5 58 58.6
Psat7g080360 Pisum sativum HOM05D006325 ORTHO05D007878 2.2e-06 55.5 45 55.6
Potri.011G081001 Populus trichocarpa HOM05D006325 ORTHO05D007878 2.9e-06 55.1 44 54.5
Sopen07g002000 Solanum pennellii HOM05D006325 ORTHO05D007878 2.9e-06 55.1 41 65.9
TWI53G1846 Tripterygium wilfordii HOM05D006325 ORTHO05D007878 2.9e-06 55.1 58 55.2
Cpa.g.sc17.42 Carica papaya HOM05D006325 ORTHO05D007878 3.7e-06 54.7 45 62.2
Glyma.05G143000 Glycine max HOM05D006325 ORTHO05D007878 3.7e-06 54.7 45 57.8
MBI18_g11235_MAGBIO Magnolia biondii HOM05D006325 ORTHO05D007878 3.7e-06 54.7 38 65.8
QL04p045948 Quercus lobata HOM05D006325 ORTHO05D007878 3.7e-06 54.7 52 51.9
Lalb_Chr13g0293971 Lupinus albus HOM05D006325 ORTHO05D007878 4.9e-06 54.3 52 51.9
Nitab4.5_0008310g0030 Nicotiana tabacum HOM05D006325 ORTHO05D007878 4.9e-06 54.3 50 52.0
Potri.004G133180 Populus trichocarpa HOM05D006325 ORTHO05D007878 4.9e-06 54.3 52 46.2
QL04p045922 Quercus lobata HOM05D006325 ORTHO05D007878 4.9e-06 54.3 52 51.9
Phvul.002G178300 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 6.4e-06 53.9 45 57.8
Phvul.002G179400 Phaseolus vulgaris HOM05D006325 ORTHO05D007878 6.4e-06 53.9 45 57.8
Psat7g080440 Pisum sativum HOM05D006325 ORTHO05D007878 6.4e-06 53.9 45 55.6
Gohir.A06G139600 Gossypium hirsutum HOM05D006325 ORTHO05D007878 8.3e-06 53.5 52 59.6
Peaxi162Scf00062g00009 Petunia axillaris HOM05D006325 ORTHO05D007878 8.3e-06 53.5 53 56.6


User provided reference genes

Program Settings