Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g26594 Nelumbo nucifera HOM05D008835 ORTHO05D011094 1.6e-79 299.3 142 100.0
TAR374G1374 Trochodendron aralioides HOM05D008835 ORTHO05D011094 2.6e-37 159.1 92 77.2
Thhalv10003932m.g Eutrema salsugineum HOM05D008835 ORTHO05D011094 2.5e-32 142.5 121 50.4
Sp2g13190 Schrenkiella parvula HOM05D008835 ORTHO05D011094 4.2e-32 141.7 118 53.4
Aa31LG2G8150 Aethionema arabicum HOM05D008835 ORTHO05D011094 9.4e-32 140.6 118 50.8
AT2G01740 Arabidopsis thaliana HOM05D008835 ORTHO05D011094 9.4e-32 140.6 121 50.4
CARHR144310 Cardamine hirsuta HOM05D008835 ORTHO05D011094 1.6e-31 139.8 118 52.5
CSS0047579 Camellia sinensis var. sinensis HOM05D008835 ORTHO05D011094 2.7e-31 139.0 122 53.3
AL5G10840 Arabidopsis lyrata HOM05D008835 ORTHO05D011094 1.2e-29 133.7 121 47.9
Carub.0005s0069 Capsella rubella HOM05D008835 ORTHO05D011094 9.7e-29 130.6 121 44.6
Cc11_g07380 Coffea canephora HOM05D008835 ORTHO05D011094 7.0e-27 124.4 124 48.4
CANSAT01G3131 Cannabis sativa HOM05D008835 ORTHO05D011094 1.6e-26 123.2 115 47.0
Sc15g0000240 Simmondsia chinensis HOM05D008835 ORTHO05D011094 2.7e-26 122.5 118 48.3
C09p30430 Brassica napus HOM05D008835 ORTHO05D011094 5.0e-25 118.2 119 46.2
Dinv10471 Davidia involucrata HOM05D008835 ORTHO05D011094 9.4e-24 114.0 87 57.5
Cpa.g.sc2.190 Carica papaya HOM05D008835 ORTHO05D011094 1.2e-23 113.6 118 43.2
Hma1.2p1_0277F.1_g111660 Hydrangea macrophylla HOM05D008835 ORTHO05D011094 2.7e-23 112.5 90 56.7
Hma1.2p1_0277F.1_g111665 Hydrangea macrophylla HOM05D008835 ORTHO05D011094 2.7e-23 112.5 90 56.7
BolC9t55906H Brassica oleracea HOM05D008835 ORTHO05D011094 6.1e-23 111.3 119 43.7
BcaC04g21553 Brassica carinata HOM05D008835 ORTHO05D011094 1.0e-22 110.5 119 42.9
Prupe.1G333800 Prunus persica HOM05D008835 ORTHO05D011094 8.8e-22 107.5 88 52.3
Lj3P864T25 Lonicera japonica HOM05D008835 ORTHO05D011094 4.4e-21 105.1 75 61.3
RcHm_v2.0_Chr4g0443001 Rosa chinensis HOM05D008835 ORTHO05D011094 1.3e-20 103.6 91 52.7
ATR0753G127 Amborella trichopoda HOM05D008835 ORTHO05D011094 4.8e-20 101.7 90 47.8
A09p23600 Brassica napus HOM05D008835 ORTHO05D011094 1.2e-18 97.1 119 40.3
BraA09t37964Z Brassica rapa HOM05D008835 ORTHO05D011094 1.2e-18 97.1 119 40.3
COL.COLO4_16597 Corchorus olitorius HOM05D002001 ORTHO05D006833 9.5e-16 87.4 87 47.1
CsaV3_5G014350 Cucumis sativus L. HOM05D008835 ORTHO05D011094 1.2e-13 80.5 62 56.5
RcHm_v2.0_Chr2g0123271 Rosa chinensis HOM05D008835 ORTHO05D011094 9.2e-11 70.9 83 41.0
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 1.0e-09 67.4 115 27.0
Sed0018402 Sechium edule HOM05D008835 ORTHO05D011094 1.0e-09 67.4 58 48.3
Lsat_1_v5_gn_5_152320 Lactuca sativa HOM05D007752 ORTHO05D009994 2.9e-09 65.9 104 31.7
arahy.Tifrunner.gnm1.ann1.M3C1JT Arachis hypogaea HOM05D006739 ORTHO05D008402 6.6e-09 64.7 93 33.3
Nn5g29409 Nelumbo nucifera HOM05D007063 ORTHO05D008822 1.9e-08 63.2 89 36.0
Gohir.D01G139800 Gossypium hirsutum HOM05D008835 ORTHO05D011094 2.5e-08 62.8 49 51.0
Gorai.002G171900 Gossypium raimondii HOM05D008835 ORTHO05D011094 2.5e-08 62.8 49 51.0
Nitab4.5_0002344g0040 Nicotiana tabacum HOM05D007570 ORTHO05D009365 3.3e-08 62.4 118 31.4
Thecc.02G293200 Theobroma cacao HOM05D008835 ORTHO05D030527 4.3e-08 62.0 121 32.2
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 5.6e-08 61.6 134 29.9
Cc02_g33170 Coffea canephora HOM05D007570 ORTHO05D009365 5.6e-08 61.6 123 29.3
RcHm_v2.0_Chr4g0408211 Rosa chinensis HOM05D008684 ORTHO05D010796 5.6e-08 61.6 68 42.6
vmacro13172 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 7.3e-08 61.2 105 31.4
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 1.2e-07 60.5 114 27.2
CSS0040292 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 1.2e-07 60.5 126 26.2
C03p81990 Brassica napus HOM05D007551 ORTHO05D009424 2.1e-07 59.7 108 27.8
BolC3t20473H Brassica oleracea HOM05D007551 ORTHO05D009424 2.1e-07 59.7 108 27.8
CANSAT78G0097 Cannabis sativa HOM05D008684 ORTHO05D010796 2.1e-07 59.7 96 30.2
Actinidia10267 Actinidia chinensis HOM05D006739 ORTHO05D008402 2.8e-07 59.3 107 26.2
Ca_05489_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 2.8e-07 59.3 77 31.2
Ca_29619_v3 Cicer arietinum L. HOM05D006739 ORTHO05D008402 2.8e-07 59.3 77 31.2
SalBow2G2822 Salvia bowleyana HOM05D006819 ORTHO05D008763 2.8e-07 59.3 113 31.0
Rhsim05G0175800 Rhododendron simsii HOM05D002479 ORTHO05D002675 3.6e-07 58.9 115 24.3
AL3G13340 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 4.7e-07 58.5 121 31.4
Peaxi162Scf00037g01028 Petunia axillaris HOM05D007570 ORTHO05D009365 4.7e-07 58.5 128 31.2
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 4.7e-07 58.5 115 27.0
Atru.BG.247.p Acer truncatum HOM05D007639 ORTHO05D009509 6.1e-07 58.2 113 28.3
MD00G1189300 Malus domestica HOM05D008684 ORTHO05D010796 6.1e-07 58.2 76 35.5
SEGI_29272 Sequoiadendron giganteum HOM05D007291 ORTHO05D009038 6.1e-07 58.2 94 31.9
Atru.chr3.1557 Acer truncatum HOM05D008684 ORTHO05D010796 8.0e-07 57.8 85 37.6
Atru.chr3.1578 Acer truncatum HOM05D008684 ORTHO05D010796 8.0e-07 57.8 85 37.6
Eucgr.G02802 Eucalyptus grandis HOM05D005287 ORTHO05D006893 8.0e-07 57.8 103 28.2
Sed0026458 Sechium edule HOM05D008684 ORTHO05D010796 8.0e-07 57.8 55 45.5
ClCG03G009720 Citrullus lanatus HOM05D007620 ORTHO05D009568 1.0e-06 57.4 97 29.9
Lj6C59T5 Lonicera japonica HOM05D008684 ORTHO05D010796 1.4e-06 57.0 64 40.6
Sed0020501 Sechium edule HOM05D000001 ORTHO05D000003 1.4e-06 57.0 79 35.4
Carub.0003s0273 Capsella rubella HOM05D000001 ORTHO05D000003 1.8e-06 56.6 119 31.1
CDE07G1979 Ceratophyllum demersum HOM05D005622 ORTHO05D002854 1.8e-06 56.6 91 34.1
ClCG02G002730 Citrullus lanatus HOM05D003210 ORTHO05D000001 1.8e-06 56.6 116 25.9
PGR142G4068 Punica granatum HOM05D005287 ORTHO05D006893 1.8e-06 56.6 131 26.0
Atru.chr12.1036 Acer truncatum HOM05D007410 ORTHO05D009500 2.3e-06 56.2 138 26.1
Ah.03g144790 Amaranthus hybridus HOM05D000001 ORTHO05D000003 2.3e-06 56.2 97 34.0
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 2.3e-06 56.2 119 26.9
SEGI_05069 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 2.3e-06 56.2 103 35.0
Solyc01g099530.3 Solanum lycopersicum HOM05D001281 ORTHO05D001139 2.3e-06 56.2 124 26.6
Thecc.01G053800 Theobroma cacao HOM05D000001 ORTHO05D000003 2.3e-06 56.2 126 27.8
ClCG08G000810 Citrullus lanatus HOM05D000001 ORTHO05D000003 3.0e-06 55.8 79 32.9
Migut.J00415 Erythranthe guttata HOM05D000855 ORTHO05D008530 3.0e-06 55.8 117 26.5
Lj2C43T7 Lonicera japonica HOM05D007620 ORTHO05D009568 3.0e-06 55.8 83 33.7
Lj1g0020630 Lotus japonicus HOM05D008684 ORTHO05D010796 3.0e-06 55.8 90 32.2
Manes.13G126800 Manihot esculenta HOM05D000001 ORTHO05D000003 3.0e-06 55.8 123 28.5
Lsat_1_v5_gn_5_103340 Lactuca sativa HOM05D007570 ORTHO05D009365 4.0e-06 55.5 123 29.3
Actinidia13116 Actinidia chinensis HOM05D000001 ORTHO05D009676 5.2e-06 55.1 100 27.0
COL.COLO4_21653 Corchorus olitorius HOM05D000162 ORTHO05D000090 5.2e-06 55.1 101 31.7
Manes.08G003100 Manihot esculenta HOM05D000855 ORTHO05D008530 5.2e-06 55.1 118 28.0
ATR0317G062 Amborella trichopoda HOM05D007496 ORTHO05D009479 6.8e-06 54.7 76 31.6
BcaC05g30266 Brassica carinata HOM05D000001 ORTHO05D000003 6.8e-06 54.7 116 27.6
Haze_16531 Corylus avellana HOM05D006819 ORTHO05D008763 6.8e-06 54.7 110 30.9
Eucgr.F03126 Eucalyptus grandis HOM05D007570 ORTHO05D009365 6.8e-06 54.7 118 28.0
PGSC0003DMG400001784 Solanum tuberosum HOM05D000001 ORTHO05D000003 6.8e-06 54.7 112 31.2
vmacro20006 Vaccinium macrocarpon HOM05D002479 ORTHO05D002675 6.8e-06 54.7 107 24.3
Atru.chr13.2353 Acer truncatum HOM05D000001 ORTHO05D000003 8.9e-06 54.3 101 32.7
AagrBONN_evm.TU.Sc2ySwM_228.4557 Anthoceros agrestis HOM05D000001 ORTHO05D000003 8.9e-06 54.3 107 25.2
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 8.9e-06 54.3 118 24.6
Ciclev10010938m.g Citrus clementina HOM05D005764 ORTHO05D006600 8.9e-06 54.3 105 26.7
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 8.9e-06 54.3 110 24.5
Hma1.2p1_1374F.1_g278810 Hydrangea macrophylla HOM05D007570 ORTHO05D009365 8.9e-06 54.3 104 30.8
Nitab4.5_0004800g0100 Nicotiana tabacum HOM05D000001 ORTHO05D000003 8.9e-06 54.3 119 28.6
Prupe.4G065400 Prunus persica HOM05D000001 ORTHO05D000003 8.9e-06 54.3 103 28.2


User provided reference genes

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