Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 2.2e-117 425.6 218 100.0
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 1.1e-95 353.6 217 81.6
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 1.7e-93 346.3 215 80.9
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 8.6e-93 344.0 216 79.2
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 1.2e-91 340.1 224 77.7
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 1.2e-91 340.1 217 78.8
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 4.7e-91 338.2 217 77.4
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 8.1e-91 337.4 217 77.4
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 1.1e-90 337.0 218 78.0
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 1.4e-90 336.7 218 77.1
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 5.2e-90 334.7 216 76.9
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 6.8e-90 334.3 217 76.0
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 8.9e-90 334.0 223 75.8
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 8.9e-90 334.0 213 78.9
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 9.8e-89 330.5 223 76.7
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.3e-88 330.1 221 76.0
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 1.7e-88 329.7 218 77.1
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 2.9e-88 328.9 217 73.7
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 2.9e-88 328.9 218 75.7
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 3.7e-88 328.6 218 75.7
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 6.4e-88 327.8 217 76.5
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.4e-87 326.6 221 75.6
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 1.9e-87 326.2 217 75.6
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 2.4e-87 325.9 224 75.0
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 7.1e-87 324.3 216 74.1
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 2.7e-86 322.4 215 74.0
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 3.5e-86 322.0 215 73.5
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 4.6e-86 321.6 215 73.5
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 4.6e-86 321.6 214 74.3
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 6.0e-86 321.2 217 74.2
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 6.0e-86 321.2 217 73.7
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 6.0e-86 321.2 213 75.1
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 1.0e-85 320.5 217 73.7
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 1.3e-85 320.1 215 73.5
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 1.7e-85 319.7 206 79.1
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 2.3e-85 319.3 247 68.8
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 3.0e-85 318.9 217 72.8
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 3.9e-85 318.5 217 71.0
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 5.1e-85 318.2 216 73.6
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 8.6e-85 317.4 210 73.3
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 1.1e-84 317.0 226 72.1
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 1.1e-84 317.0 219 72.1
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.9e-84 316.2 215 72.6
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 2.5e-84 315.8 217 70.5
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 2.5e-84 315.8 220 72.7
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 3.3e-84 315.5 224 73.2
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 3.3e-84 315.5 220 72.7
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 4.3e-84 315.1 223 70.9
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 5.6e-84 314.7 217 71.4
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 5.6e-84 314.7 218 71.6
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 7.3e-84 314.3 220 72.3
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 1.6e-83 313.2 214 74.3
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 2.1e-83 312.8 216 71.8
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 3.6e-83 312.0 225 71.6
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 3.6e-83 312.0 257 65.8
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 4.7e-83 311.6 216 70.8
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 6.2e-83 311.2 236 69.1
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 1.1e-82 310.5 215 71.6
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 1.1e-82 310.5 218 69.7
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 1.8e-82 309.7 224 68.8
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 1.8e-82 309.7 217 70.5
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 2.3e-82 309.3 218 70.2
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 2.3e-82 309.3 218 70.6
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 3.1e-82 308.9 216 72.2
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 4.0e-82 308.5 243 66.3
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 4.0e-82 308.5 216 70.4
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 5.2e-82 308.1 224 71.9
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 8.9e-82 307.4 216 71.8
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 1.2e-81 307.0 217 71.0
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 1.5e-81 306.6 217 71.4
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 2.0e-81 306.2 218 70.6
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 2.6e-81 305.8 227 70.5
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 3.4e-81 305.4 219 70.8
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 3.4e-81 305.4 221 70.1
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 4.4e-81 305.1 217 68.7
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 1.3e-80 303.5 219 70.3
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 2.9e-80 302.4 181 85.6
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 1.1e-79 300.4 215 70.2
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 1.1e-79 300.4 221 67.9
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 1.4e-79 300.1 225 66.7
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 2.4e-79 299.3 219 68.9
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 2.4e-79 299.3 216 69.4
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 3.2e-79 298.9 218 67.0
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 4.1e-79 298.5 260 60.8
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 9.2e-79 297.4 218 67.0
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 1.2e-78 297.0 225 68.4
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 1.2e-78 297.0 223 66.4
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 1.2e-78 297.0 221 67.0
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 2.1e-78 296.2 220 66.8
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 2.1e-78 296.2 221 67.0
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 3.5e-78 295.4 220 65.0
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 3.5e-78 295.4 220 65.0
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 4.6e-78 295.0 216 67.1
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 7.8e-78 294.3 220 63.6
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 1.7e-77 293.1 217 66.8
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 1.7e-77 293.1 207 72.5
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 1.7e-77 293.1 223 65.9
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 3.0e-77 292.4 159 85.5
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 3.0e-77 292.4 186 75.8
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 3.9e-77 292.0 219 63.5
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 3.9e-77 292.0 219 63.5
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 8.6e-77 290.8 224 65.2
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 2.1e-75 286.2 231 61.5
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 2.8e-75 285.8 250 60.8
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 6.2e-75 284.6 158 85.4
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 1.1e-74 283.9 212 67.9
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 2.4e-74 282.7 210 70.0
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 6.9e-74 281.2 217 63.6
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 8.9e-74 280.8 222 66.2
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 1.2e-73 280.4 219 63.9
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 1.6e-70 270.0 220 61.4
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 5.1e-69 265.0 208 66.8
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 6.2e-67 258.1 191 70.2
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 4.0e-66 255.4 220 61.4
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 3.8e-64 248.8 216 60.6
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 1.5e-57 226.9 121 86.8
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 1.7e-56 223.4 232 51.7
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 2.2e-56 223.0 221 58.8
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 1.1e-55 220.7 132 75.8
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 1.1e-55 220.7 217 54.4
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 3.9e-53 212.2 114 86.0
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 1.3e-51 207.2 245 49.4
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 1.5e-49 200.3 204 51.5
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 2.7e-46 189.5 235 47.2
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 4.1e-42 175.6 100 85.0
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.5e-41 173.7 167 55.1
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 3.6e-38 162.5 266 37.6
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 5.0e-32 142.1 178 47.2
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 5.1e-29 132.1 246 38.6
SHI24908 Sapria himalayana HOM05D005618 ORTHO05D007278 9.4e-15 84.7 88 55.7
MBI18_g05573_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 1.4e-13 80.9 42 85.7
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 2.0e-12 77.0 43 83.7
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 1.6e-09 67.4 38 76.3
Aqoxy7G01552 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 3.5e-09 66.2 36 77.8
SMO364G0864 Selaginella moellendorffii HOM05D005618 ORTHO05D374196 5.0e-08 62.4 202 29.2
AT1G30060 Arabidopsis thaliana HOM05D008497 ORTHO05D003355 8.0e-06 55.1 28 82.1


User provided reference genes

Program Settings