Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g26566 Nelumbo nucifera HOM05D007451 ORTHO05D009399 4.8e-88 328.2 213 100.0
TAR624G0819 Trochodendron aralioides HOM05D007451 ORTHO05D009399 1.9e-52 209.9 219 58.4
MBI07_g23439_MAGBIO Magnolia biondii HOM05D007451 ORTHO05D009399 9.4e-44 181.0 209 50.7
Potri.004G132600 Populus trichocarpa HOM05D007451 ORTHO05D009399 1.4e-42 177.2 211 52.6
PSO541G4911 Papaver somniferum HOM05D007451 ORTHO05D009399 4.4e-41 172.2 209 51.2
Manes.17G070400 Manihot esculenta HOM05D007451 ORTHO05D009399 1.7e-40 170.2 211 50.7
PSO675G9053 Papaver somniferum HOM05D007451 ORTHO05D009399 1.7e-40 170.2 210 51.0
GSVIVG01021497001 Vitis vinifera HOM05D007451 ORTHO05D009399 2.0e-38 163.3 223 50.2
Aqoxy1G01697 Aquilegia oxysepala HOM05D007451 ORTHO05D009399 3.5e-38 162.5 206 49.5
Thecc.06G150100 Theobroma cacao HOM05D007451 ORTHO05D009399 4.2e-36 155.6 211 48.3
TWI73G0492 Tripterygium wilfordii HOM05D007451 ORTHO05D009399 7.2e-36 154.8 221 47.5
CiPaw.10G091600 Carya illinoinensis HOM05D007451 ORTHO05D009399 1.2e-35 154.1 204 48.0
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 2.7e-35 152.9 200 47.5
CANSAT35G1195 Cannabis sativa HOM05D007451 ORTHO05D009399 2.7e-35 152.9 206 47.6
Lj1C1189G10 Lonicera japonica HOM05D007451 ORTHO05D009399 1.4e-34 150.6 207 45.9
arahy.Tifrunner.gnm1.ann1.ZU2BT9 Arachis hypogaea HOM05D007451 ORTHO05D009399 2.2e-32 143.3 211 46.0
Ciclev10018276m.g Citrus clementina HOM05D007451 ORTHO05D009399 3.7e-32 142.5 207 44.4
Medtr4g084470 Medicago truncatula HOM05D007451 ORTHO05D009399 1.1e-31 141.0 202 46.0
Oeu031273.1 Olea europaea HOM05D007451 ORTHO05D009399 3.1e-31 139.4 210 46.2
Psat7g130000 Pisum sativum HOM05D007451 ORTHO05D009399 4.1e-31 139.0 202 46.5
ECA246G3905 Erigeron canadensis HOM05D007451 ORTHO05D009399 5.4e-31 138.7 214 43.5
RcHm_v2.0_Chr5g0014241 Rosa chinensis HOM05D007451 ORTHO05D009399 1.6e-30 137.1 209 45.0
Actinidia07699 Actinidia chinensis HOM05D007451 ORTHO05D009399 5.9e-30 135.2 209 45.9
Hma1.2p1_0286F.1_g114180 Hydrangea macrophylla HOM05D007451 ORTHO05D009399 2.3e-29 133.3 211 44.5
FAN21G0862 Fragaria x ananassa HOM05D007451 ORTHO05D009399 3.8e-29 132.5 226 44.2
VMungo0251G0908 Vigna mungo HOM05D007451 ORTHO05D009399 3.8e-29 132.5 209 45.9
HanXRQChr04g0114281 Helianthus annuus HOM05D007451 ORTHO05D009399 5.0e-29 132.1 209 43.1
arahy.Tifrunner.gnm1.ann1.Z8IVUX Arachis hypogaea HOM05D007451 ORTHO05D009399 6.6e-29 131.7 232 42.2
Sc17g0004890 Simmondsia chinensis HOM05D007451 ORTHO05D009399 1.9e-28 130.2 201 42.8
Rhsim02G0158600 Rhododendron simsii HOM05D007451 ORTHO05D009399 2.5e-28 129.8 229 40.2
Nitab4.5_0003044g0100 Nicotiana tabacum HOM05D007451 ORTHO05D009399 3.3e-28 129.4 210 41.9
Lsat_1_v5_gn_7_28421 Lactuca sativa HOM05D007451 ORTHO05D009399 5.6e-28 128.6 207 42.0
Phvul.002G096800 Phaseolus vulgaris HOM05D007451 ORTHO05D009399 6.1e-27 125.2 218 42.7
Gohir.D10G042000 Gossypium hirsutum HOM05D007451 ORTHO05D009399 2.0e-25 120.2 219 39.3
Gorai.011G044600 Gossypium raimondii HOM05D007451 ORTHO05D009399 2.0e-25 120.2 219 39.3
CSS0015635 Camellia sinensis var. sinensis HOM05D007451 ORTHO05D009399 2.6e-25 119.8 218 40.8
Prupe.4G081100 Prunus persica HOM05D007451 ORTHO05D009399 1.3e-24 117.5 207 40.6
CSS0045800 Camellia sinensis var. sinensis HOM05D007451 ORTHO05D009399 2.2e-24 116.7 197 43.7
QL05p057933 Quercus lobata HOM05D007451 ORTHO05D009399 2.2e-24 116.7 219 39.7
MD05G1283500 Malus domestica HOM05D007451 ORTHO05D009399 2.9e-24 116.3 207 39.6
Sabra04G0085400 Salix brachista HOM05D007451 ORTHO05D009399 4.9e-24 115.5 201 43.3
Cfa000938 Carpinus fangiana HOM05D007451 ORTHO05D009399 1.8e-23 113.6 201 41.3
CAN.G65.121 Capsicum annuum HOM05D007451 ORTHO05D009399 7.0e-23 111.7 213 40.8
EL10Ac8g19670 Beta vulgaris HOM05D007451 ORTHO05D009399 4.6e-22 109.0 201 40.3
FAN11G0575 Fragaria x ananassa HOM05D007451 ORTHO05D009399 1.7e-21 107.1 197 40.1
Lalb_Chr16g0385141 Lupinus albus HOM05D007451 ORTHO05D009399 1.7e-21 107.1 208 40.9
Glyma.07G220100 Glycine max HOM05D007451 ORTHO05D009399 2.3e-21 106.7 216 39.4
EL10Ac8g19669 Beta vulgaris HOM05D007451 ORTHO05D009399 8.6e-21 104.8 201 39.8
AL4G30550 Arabidopsis lyrata HOM05D007451 ORTHO05D009399 1.1e-20 104.4 161 44.1
Lj4g0011610 Lotus japonicus HOM05D007451 ORTHO05D009399 1.9e-20 103.6 161 42.2
Carub.0004s1625 Capsella rubella HOM05D007451 ORTHO05D009399 4.3e-20 102.4 161 42.9
BcaC02g11529 Brassica carinata HOM05D007451 ORTHO05D009399 5.6e-20 102.1 161 42.9
Nitab4.5_0003838g0080 Nicotiana tabacum HOM05D007451 ORTHO05D009399 5.6e-20 102.1 219 36.1
TPR.G38261 Trifolium pratense HOM05D007451 ORTHO05D009399 7.3e-20 101.7 115 56.5
AT2G34580 Arabidopsis thaliana HOM05D007451 ORTHO05D009399 1.6e-19 100.5 160 43.8
Gohir.A10G041200 Gossypium hirsutum HOM05D007451 ORTHO05D009399 2.8e-19 99.8 189 39.2
Sp4g16840 Schrenkiella parvula HOM05D007451 ORTHO05D009399 2.8e-19 99.8 161 42.2
Thhalv10017344m.g Eutrema salsugineum HOM05D007451 ORTHO05D009399 4.7e-19 99.0 160 43.1
Zm00001eb204550 Zea mays HOM05D007451 ORTHO05D009399 6.2e-19 98.6 202 44.1
BcaB02g09525 Brassica carinata HOM05D007451 ORTHO05D009399 8.0e-19 98.2 161 41.0
FvH4_3g05500 Fragaria vesca HOM05D007451 ORTHO05D009399 3.1e-18 96.3 207 38.2
AUR62002741 Chenopodium quinoa HOM05D007451 ORTHO05D009399 7.5e-17 91.7 206 39.3
AUR62030193 Chenopodium quinoa HOM05D007451 ORTHO05D009399 9.8e-17 91.3 206 38.3
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.3e-16 90.9 179 40.8
CARHR128670 Cardamine hirsuta HOM05D007451 ORTHO05D009399 1.7e-16 90.5 161 40.4
AUR62002733 Chenopodium quinoa HOM05D007451 ORTHO05D009399 3.7e-16 89.4 206 38.8
vmacro10960 Vaccinium macrocarpon HOM05D007451 ORTHO05D009399 1.9e-15 87.0 116 44.0
BraA05t20052Z Brassica rapa HOM05D007451 ORTHO05D009399 3.2e-15 86.3 189 36.0
Eucgr.E03355 Eucalyptus grandis HOM05D007451 ORTHO05D009399 7.0e-15 85.1 115 52.2
Gorai.008G053800 Gossypium raimondii HOM05D007451 ORTHO05D009399 9.2e-15 84.7 206 35.9
Cc10_g10170 Coffea canephora HOM05D007451 ORTHO05D009399 1.2e-14 84.3 112 51.8
Duzib192G0695 Durio zibethinus HOM05D007451 ORTHO05D009399 2.0e-14 83.6 77 66.2
Glyma.20G018400 Glycine max HOM05D007451 ORTHO05D009399 2.7e-14 83.2 115 51.3
THA.LOC104814695 Tarenaya hassleriana HOM05D007451 ORTHO05D009399 5.6e-12 75.5 115 47.0
Eucgr.B02066 Eucalyptus grandis HOM05D007451 ORTHO05D009399 9.5e-12 74.7 115 47.8
BolC4t27857H Brassica oleracea HOM05D007451 ORTHO05D009399 1.2e-11 74.3 96 47.9
Eucgr.I02284 Eucalyptus grandis HOM05D007451 ORTHO05D009399 2.1e-11 73.6 127 45.7
DCAR_003911 Daucus carota HOM05D007451 ORTHO05D009399 3.6e-11 72.8 110 44.5
Dinv32247 Davidia involucrata HOM05D007451 ORTHO05D009399 6.2e-11 72.0 59 72.9
Haze_05609 Corylus avellana HOM05D007451 ORTHO05D009399 8.1e-11 71.6 108 38.9
Peaxi162Scf00443g00210 Petunia axillaris HOM05D007451 ORTHO05D009399 4.0e-10 69.3 117 39.3
A05p11060 Brassica napus HOM05D005261 ORTHO05D006180 5.2e-10 68.9 135 34.8
Eucgr.H02213 Eucalyptus grandis HOM05D007451 ORTHO05D009399 6.8e-10 68.6 88 48.9
BolC4t23021H Brassica oleracea HOM05D005261 ORTHO05D006180 1.2e-09 67.8 153 33.3
CDE02G3067 Ceratophyllum demersum HOM05D007451 ORTHO05D009399 1.3e-08 64.3 116 35.3
MBI06_g26106_MAGBIO Magnolia biondii HOM05D007451 ORTHO05D009399 2.2e-08 63.5 61 59.0
MBI06_g46402_MAGBIO Magnolia biondii HOM05D000482 ORTHO05D000349 1.6e-06 57.4 63 52.4
arahy.Tifrunner.gnm1.ann1.WBAN0Y Arachis hypogaea HOM05D007451 ORTHO05D009399 6.0e-06 55.5 88 42.0
Gorai.004G185100 Gossypium raimondii HOM05D007451 ORTHO05D009399 6.0e-06 55.5 144 35.4
Gohir.D12G050550 Gossypium hirsutum HOM05D007451 ORTHO05D009399 7.8e-06 55.1 144 34.7


User provided reference genes

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