Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g26563 Nelumbo nucifera HOM05D004738 ORTHO05D006439 5.1e-90 334.3 163 100.0
Nn2g11397 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.4e-47 193.4 248 49.2
Nn2g11846 Nelumbo nucifera HOM05D004738 ORTHO05D006439 3.4e-41 172.2 244 43.0
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 7.5e-41 171.0 242 42.6
Aqoxy7G03780 Aquilegia oxysepala HOM05D004738 ORTHO05D006439 4.8e-40 168.3 241 42.3
Lsat_1_v5_gn_1_34140 Lactuca sativa HOM05D004738 ORTHO05D006439 1.4e-39 166.8 247 41.7
Dinv30535 Davidia involucrata HOM05D004738 ORTHO05D006439 2.4e-39 166.0 242 42.1
HanXRQChr04g0096441 Helianthus annuus HOM05D004738 ORTHO05D006439 3.1e-39 165.6 246 42.3
Nn8g39296 Nelumbo nucifera HOM05D004738 ORTHO05D006439 3.1e-39 165.6 243 41.2
GSVIVG01017163001 Vitis vinifera HOM05D004738 ORTHO05D006439 3.1e-39 165.6 242 41.7
COL.COLO4_02957 Corchorus olitorius HOM05D004738 ORTHO05D006439 4.1e-39 165.2 241 41.5
Duzib192G0909 Durio zibethinus HOM05D004738 ORTHO05D006439 2.0e-38 162.9 241 41.1
CiPaw.02G152800 Carya illinoinensis HOM05D004738 ORTHO05D006439 2.7e-38 162.5 241 41.9
Actinidia08828 Actinidia chinensis HOM05D004738 ORTHO05D006439 3.5e-38 162.2 126 65.9
MD17G1198400 Malus domestica HOM05D004738 ORTHO05D006439 3.5e-38 162.2 241 41.1
Prupe.3G075100 Prunus persica HOM05D004738 ORTHO05D006439 3.5e-38 162.2 241 41.1
Rhsim12G0195800 Rhododendron simsii HOM05D004738 ORTHO05D006439 3.5e-38 162.2 241 41.9
SGA_v2.0_scaffold37G14802 Striga asiatica HOM05D004738 ORTHO05D006439 3.5e-38 162.2 241 40.7
ECA247G3808 Erigeron canadensis HOM05D004738 ORTHO05D006439 4.5e-38 161.8 241 41.9
Thecc.06G081700 Theobroma cacao HOM05D004738 ORTHO05D006439 5.9e-38 161.4 241 41.5
A07p26650 Brassica napus HOM05D004738 ORTHO05D006439 7.7e-38 161.0 243 42.0
BraA07t30308Z Brassica rapa HOM05D004738 ORTHO05D006439 7.7e-38 161.0 243 42.0
Ca_01103_v3 Cicer arietinum L. HOM05D004738 ORTHO05D006439 1.0e-37 160.6 243 40.7
BcaC08g45309 Brassica carinata HOM05D004738 ORTHO05D006439 1.3e-37 160.2 243 41.6
C06p29130 Brassica napus HOM05D004738 ORTHO05D006439 1.3e-37 160.2 243 41.6
BolC6t38077H Brassica oleracea HOM05D004738 ORTHO05D006439 1.3e-37 160.2 243 41.6
HanXRQChr02g0032631 Helianthus annuus HOM05D004738 ORTHO05D006439 1.7e-37 159.8 238 42.4
vmacro16939 Vaccinium macrocarpon HOM05D004738 ORTHO05D006439 1.7e-37 159.8 241 41.1
Haze_16464 Corylus avellana HOM05D004738 ORTHO05D006439 2.2e-37 159.5 238 41.6
CsaV3_7G032950 Cucumis sativus L. HOM05D004738 ORTHO05D006439 2.2e-37 159.5 241 40.2
Lj9A505T66 Lonicera japonica HOM05D004738 ORTHO05D006439 2.2e-37 159.5 241 40.2
PSO210G3793 Papaver somniferum HOM05D004738 ORTHO05D006439 2.2e-37 159.5 119 67.2
BcaB02g07276 Brassica carinata HOM05D004738 ORTHO05D006439 2.9e-37 159.1 243 41.6
QL05p025470 Quercus lobata HOM05D004738 ORTHO05D006439 2.9e-37 159.1 241 41.9
EL10Ac9g21974 Beta vulgaris HOM05D004738 ORTHO05D006439 3.8e-37 158.7 126 64.3
CANSAT56G4214 Cannabis sativa HOM05D004738 ORTHO05D006439 3.8e-37 158.7 241 40.2
Duzib235G1168 Durio zibethinus HOM05D004738 ORTHO05D006439 3.8e-37 158.7 251 39.8
Glyma.15G012500 Glycine max HOM05D004738 ORTHO05D006439 3.8e-37 158.7 241 40.2
Psat5g299520 Pisum sativum HOM05D004738 ORTHO05D006439 3.8e-37 158.7 243 39.5
Sabra03G0032700 Salix brachista HOM05D004738 ORTHO05D006439 5.0e-37 158.3 243 39.9
AL2G41120 Arabidopsis lyrata HOM05D004738 ORTHO05D006439 6.5e-37 157.9 243 41.2
DCAR_026302 Daucus carota HOM05D004738 ORTHO05D006439 6.5e-37 157.9 241 39.8
Medtr2g102510 Medicago truncatula HOM05D004738 ORTHO05D006439 6.5e-37 157.9 243 39.9
PSO210G6241 Papaver somniferum HOM05D004738 ORTHO05D006439 6.5e-37 157.9 122 64.8
AT1G80380 Arabidopsis thaliana HOM05D004738 ORTHO05D006439 8.5e-37 157.5 126 63.5
AUR62016418 Chenopodium quinoa HOM05D004738 ORTHO05D006439 8.5e-37 157.5 126 62.7
Gohir.A05G127000 Gossypium hirsutum HOM05D004738 ORTHO05D006439 8.5e-37 157.5 246 39.4
Os01g0682500 Oryza sativa ssp. japonica HOM05D004738 ORTHO05D006439 8.5e-37 157.5 243 39.5
MELO3C023371.2 Cucumis melo HOM05D004738 ORTHO05D006439 1.1e-36 157.1 243 41.2
Gohir.A02G122900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 1.1e-36 157.1 243 40.3
Potri.003G058500 Populus trichocarpa HOM05D004738 ORTHO05D006439 1.1e-36 157.1 243 39.9
Dinv38066 Davidia involucrata HOM05D004738 ORTHO05D006439 1.5e-36 156.8 126 65.1
MSTRG.11096 Avicennia marina HOM05D004738 ORTHO05D006439 1.9e-36 156.4 119 66.4
Cc04_g03640 Coffea canephora HOM05D004738 ORTHO05D006439 1.9e-36 156.4 126 61.9
Gorai.002G058000 Gossypium raimondii HOM05D004738 ORTHO05D006439 1.9e-36 156.4 243 40.3
Peaxi162Scf00015g00234 Petunia axillaris HOM05D004738 ORTHO05D006439 1.9e-36 156.4 126 61.9
TPR.G37250 Trifolium pratense HOM05D004738 ORTHO05D006439 1.9e-36 156.4 243 38.7
VMungo1080G0347 Vigna mungo HOM05D004738 ORTHO05D006439 1.9e-36 156.4 241 39.8
C02p37360 Brassica napus HOM05D004738 ORTHO05D006439 2.5e-36 156.0 126 62.7
THA.LOC104808210 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 2.5e-36 156.0 243 40.3
BcaC03g15976 Brassica carinata HOM05D004738 ORTHO05D006439 3.2e-36 155.6 126 61.9
A02p23600 Brassica napus HOM05D004738 ORTHO05D006439 3.2e-36 155.6 126 62.7
BolC2t09746H Brassica oleracea HOM05D004738 ORTHO05D006439 3.2e-36 155.6 126 61.9
BraA02t07352Z Brassica rapa HOM05D004738 ORTHO05D006439 3.2e-36 155.6 126 62.7
CSS0005409 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 3.2e-36 155.6 241 40.7
Nitab4.5_0005784g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 3.2e-36 155.6 238 39.5
TWI12G0818 Tripterygium wilfordii HOM05D004738 ORTHO05D006439 3.2e-36 155.6 241 40.2
Ciclev10025569m.g Citrus clementina HOM05D004738 ORTHO05D006439 4.2e-36 155.2 126 61.9
FAN02G1331 Fragaria x ananassa HOM05D004738 ORTHO05D006439 4.2e-36 155.2 126 62.7
FAN05G5687 Fragaria x ananassa HOM05D004738 ORTHO05D006439 4.2e-36 155.2 126 62.7
FAN09G3531 Fragaria x ananassa HOM05D004738 ORTHO05D006439 4.2e-36 155.2 126 62.7
MBI01_g13569_MAGBIO Magnolia biondii HOM05D004738 ORTHO05D006439 4.2e-36 155.2 126 62.7
Aa31LG4G650 Aethionema arabicum HOM05D004738 ORTHO05D006439 5.5e-36 154.8 119 63.9
Sc12g0009100 Simmondsia chinensis HOM05D004738 ORTHO05D006439 5.5e-36 154.8 119 64.7
arahy.Tifrunner.gnm1.ann1.2F1L5Z Arachis hypogaea HOM05D004738 ORTHO05D006439 7.2e-36 154.5 241 40.2
arahy.Tifrunner.gnm1.ann1.S5ELWT Arachis hypogaea HOM05D004738 ORTHO05D006439 7.2e-36 154.5 241 40.2
Migut.I00837 Erythranthe guttata HOM05D004738 ORTHO05D006439 7.2e-36 154.5 242 38.0
Eucgr.F02574 Eucalyptus grandis HOM05D004738 ORTHO05D006439 9.4e-36 154.1 241 39.8
CSS0037007 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 1.2e-35 153.7 226 40.7
Carub.0002s2719 Capsella rubella HOM05D004738 ORTHO05D006439 1.2e-35 153.7 238 39.1
CARHR074130 Cardamine hirsuta HOM05D004738 ORTHO05D006439 1.2e-35 153.7 126 61.9
Oeu033460.1 Olea europaea HOM05D004738 ORTHO05D006439 1.2e-35 153.7 118 64.4
Phvul.005G173200 Phaseolus vulgaris HOM05D004738 ORTHO05D006439 1.2e-35 153.7 242 38.8
Zm00001eb267390 Zea mays HOM05D004738 ORTHO05D006439 1.2e-35 153.7 245 38.0
Cpa.g.sc10.174 Carica papaya HOM05D004738 ORTHO05D006439 1.6e-35 153.3 238 40.8
FvH4_6g30840 Fragaria vesca HOM05D004738 ORTHO05D006439 1.6e-35 153.3 126 61.9
RcHm_v2.0_Chr2g0137281 Rosa chinensis HOM05D004738 ORTHO05D006439 1.6e-35 153.3 126 61.9
Sed0002572 Sechium edule HOM05D004738 ORTHO05D006439 1.6e-35 153.3 247 39.7
CDE06G1313 Ceratophyllum demersum HOM05D004738 ORTHO05D006439 2.1e-35 152.9 117 64.1
AUR62011604 Chenopodium quinoa HOM05D004738 ORTHO05D006439 2.7e-35 152.5 126 61.1
Glyma.13G361400 Glycine max HOM05D004738 ORTHO05D006439 2.7e-35 152.5 241 39.4
BcaB05g25272 Brassica carinata HOM05D004738 ORTHO05D006439 3.6e-35 152.1 242 39.7
BolC6t40426H Brassica oleracea HOM05D004738 ORTHO05D006439 3.6e-35 152.1 261 37.9
Gohir.D03G073500 Gossypium hirsutum HOM05D004738 ORTHO05D006439 3.6e-35 152.1 238 40.3
Oeu022417.1 Olea europaea HOM05D004738 ORTHO05D006439 6.1e-35 151.4 118 64.4
Gorai.009G132100 Gossypium raimondii HOM05D004738 ORTHO05D006439 8.0e-35 151.0 241 39.0
Manes.04G120700 Manihot esculenta HOM05D004738 ORTHO05D006439 8.0e-35 151.0 242 40.1
PGSC0003DMG400002559 Solanum tuberosum HOM05D004738 ORTHO05D006439 8.0e-35 151.0 126 60.3
Solyc03g120430.3 Solanum lycopersicum HOM05D004738 ORTHO05D006439 1.0e-34 150.6 239 38.5
Sopen00g008920 Solanum pennellii HOM05D004738 ORTHO05D006439 1.0e-34 150.6 239 38.5
Sopen03g039310 Solanum pennellii HOM05D004738 ORTHO05D006439 1.0e-34 150.6 239 38.5
THA.LOC104812476 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 1.4e-34 150.2 119 63.9
FAN14G4632 Fragaria x ananassa HOM05D004738 ORTHO05D006439 1.8e-34 149.8 126 61.1
PGR102G2550 Punica granatum HOM05D004738 ORTHO05D006439 1.8e-34 149.8 125 59.2
Thhalv10018540m.g Eutrema salsugineum HOM05D004738 ORTHO05D006439 2.3e-34 149.4 233 39.9
Potri.001G177300 Populus trichocarpa HOM05D004738 ORTHO05D006439 2.3e-34 149.4 243 39.1
Sp5g35430 Schrenkiella parvula HOM05D004738 ORTHO05D006439 2.3e-34 149.4 243 39.1
Zm00001eb156570 Zea mays HOM05D004738 ORTHO05D006439 2.3e-34 149.4 126 59.5
BcaC08g47585 Brassica carinata HOM05D004738 ORTHO05D006439 5.2e-34 148.3 243 39.1
C06p54140 Brassica napus HOM05D004738 ORTHO05D006439 5.2e-34 148.3 243 39.1
ClCG09G002360 Citrullus lanatus HOM05D004738 ORTHO05D006439 5.2e-34 148.3 128 60.2
BcaB02g08689 Brassica carinata HOM05D004738 ORTHO05D006439 6.8e-34 147.9 243 39.1
CAN.G438.45 Capsicum annuum HOM05D004738 ORTHO05D006439 6.8e-34 147.9 126 57.1
Lj3g0008822 Lotus japonicus HOM05D004738 ORTHO05D006439 6.8e-34 147.9 126 60.3
A07p45280 Brassica napus HOM05D004738 ORTHO05D006439 8.8e-34 147.5 243 39.1
BraA07t32032Z Brassica rapa HOM05D004738 ORTHO05D006439 8.8e-34 147.5 243 39.1
Lalb_Chr14g0373571 Lupinus albus HOM05D004738 ORTHO05D006439 8.8e-34 147.5 126 59.5
Gohir.D05G127900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 1.2e-33 147.1 126 59.5
Hund06597 Selenicereus undatus HOM05D004738 ORTHO05D006439 2.0e-33 146.4 242 37.2
ATR0083G024 Amborella trichopoda HOM05D004738 ORTHO05D006439 2.6e-33 146.0 113 64.6
Nitab4.5_0002424g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 5.7e-33 144.8 259 36.3
Cfa002046 Carpinus fangiana HOM05D004738 ORTHO05D006439 1.3e-32 143.7 238 39.9
Lalb_Chr22g0351141 Lupinus albus HOM05D004738 ORTHO05D006439 2.2e-32 142.9 126 57.9
unitig_21.g20511 Utricularia gibba HOM05D004738 ORTHO05D006439 2.8e-32 142.5 115 61.7
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 1.1e-31 140.6 126 60.3
Lj3g0001201 Lotus japonicus HOM05D004738 ORTHO05D006439 2.4e-31 139.4 243 38.7
HPP92_011481 Vanilla planifolia HOM05D004738 ORTHO05D006439 2.0e-30 136.3 215 40.9
SEGI_20298 Sequoiadendron giganteum HOM05D004738 ORTHO05D006439 7.7e-30 134.4 123 55.3
AagrBONN_evm.TU.Sc2ySwM_368.190 Anthoceros agrestis HOM05D004738 ORTHO05D006439 1.0e-29 134.0 117 59.8
HPP92_011544 Vanilla planifolia HOM05D004738 ORTHO05D006439 3.3e-28 129.0 128 55.5
CBR_g49861 Chara braunii HOM05D004738 ORTHO05D006439 3.6e-27 125.6 136 47.8
Pp3c18_16070 Physcomitrium patens HOM05D004738 ORTHO05D006439 3.0e-26 122.5 118 52.5
SMO147G0425 Selaginella moellendorffii HOM05D004738 ORTHO05D006439 2.0e-25 119.8 118 53.4
SHI09688 Sapria himalayana HOM05D004738 ORTHO05D006439 9.8e-25 117.5 130 53.8
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 1.3e-24 117.1 102 55.9
Mapoly0010s0209 Marchantia polymorpha HOM05D004738 ORTHO05D006439 2.8e-24 115.9 117 49.6
Cre12.g542300 Chlamydomonas reinhardtii HOM05D004738 ORTHO05D006439 4.9e-24 115.2 111 52.3
arahy.Tifrunner.gnm1.ann1.7R7SHJ Arachis hypogaea HOM05D004738 ORTHO05D006439 5.6e-20 101.7 199 36.2
PRCOL_00005044 Prasinoderma coloniale HOM05D004738 ORTHO05D006439 1.9e-15 86.7 115 42.6
MCO11G539 Micromonas commoda HOM05D004738 ORTHO05D006439 3.2e-15 85.9 121 39.7
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 3.9e-13 79.0 47 72.3
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 6.6e-13 78.2 196 31.6
Ah.09g223940 Amaranthus hybridus HOM05D004738 ORTHO05D001643 1.9e-12 76.6 81 54.3
TAR636G0147 Trochodendron aralioides HOM05D004738 ORTHO05D051490 9.8e-09 64.3 50 56.0
TAR636G3653 Trochodendron aralioides HOM05D004738 ORTHO05D051490 8.3e-08 61.2 50 54.0
Nn3g18662 Nelumbo nucifera HOM05D004738 ORTHO05D273315 1.1e-07 60.8 36 88.9
Nn1g05393 Nelumbo nucifera HOM05D004738 ORTHO05D280673 1.2e-06 57.4 35 68.6


User provided reference genes

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