Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g26546 Nelumbo nucifera HOM05D008142 ORTHO05D009674 5.0e-96 354.4 171 100.0
Nn3g20734 Nelumbo nucifera HOM05D008142 ORTHO05D009674 4.0e-53 211.8 178 68.5
TAR629G2490 Trochodendron aralioides HOM05D008142 ORTHO05D009674 5.6e-31 138.3 178 50.6
TAR627G0365 Trochodendron aralioides HOM05D008142 ORTHO05D009674 2.0e-28 129.8 172 47.1
Dinv13326 Davidia involucrata HOM05D000230 ORTHO05D000176 4.5e-28 128.6 163 46.6
CSS0003990 Camellia sinensis var. sinensis HOM05D008142 ORTHO05D009674 5.8e-28 128.3 182 45.6
CSS0017983 Camellia sinensis var. sinensis HOM05D008142 ORTHO05D009674 1.7e-27 126.7 177 43.5
TAR626G0317 Trochodendron aralioides HOM05D008142 ORTHO05D009674 2.9e-27 125.9 170 45.3
QL04p069987 Quercus lobata HOM05D008142 ORTHO05D009674 1.1e-26 124.0 164 46.3
MBI07_g26359_MAGBIO Magnolia biondii HOM05D008142 ORTHO05D009674 4.2e-26 122.1 166 46.4
RhsimUnG0205300 Rhododendron simsii HOM05D008142 ORTHO05D009674 7.9e-25 117.9 170 41.2
Actinidia35170 Actinidia chinensis HOM05D008142 ORTHO05D009674 2.3e-24 116.3 172 42.4
Haze_08481 Corylus avellana HOM05D008142 ORTHO05D009674 2.3e-24 116.3 173 41.6
CSS0032813 Camellia sinensis var. sinensis HOM05D008142 ORTHO05D009674 3.0e-24 115.9 175 45.1
RhsimUnG0205200 Rhododendron simsii HOM05D008142 ORTHO05D009674 5.1e-24 115.2 170 41.2
Hma1.2p1_0280F.1_g112890 Hydrangea macrophylla HOM05D008142 ORTHO05D009674 6.7e-24 114.8 176 42.6
Dinv26679 Davidia involucrata HOM05D008142 ORTHO05D009674 8.7e-24 114.4 136 48.5
MBI10_g02220_MAGBIO Magnolia biondii HOM05D008142 ORTHO05D009674 4.3e-23 112.1 139 49.6
Cfa019469 Carpinus fangiana HOM05D008142 ORTHO05D009674 1.3e-22 110.5 167 40.7
Aqoxy1G01717 Aquilegia oxysepala HOM05D008142 ORTHO05D009674 1.6e-22 110.2 177 40.7
Eucgr.F03213 Eucalyptus grandis HOM05D008142 ORTHO05D009674 8.1e-22 107.8 173 45.1
Actinidia18850 Actinidia chinensis HOM05D008142 ORTHO05D009674 3.1e-21 105.9 163 41.7
QL04p069966 Quercus lobata HOM05D008142 ORTHO05D009674 3.1e-21 105.9 164 42.7
Aqoxy1G01721 Aquilegia oxysepala HOM05D008142 ORTHO05D009674 7.6e-20 101.3 177 40.7
Thecc.07G144200 Theobroma cacao HOM05D008142 ORTHO05D009674 8.4e-19 97.8 159 40.9
Oeu001311.1 Olea europaea HOM05D008142 ORTHO05D009674 1.4e-18 97.1 173 38.2
Oeu020029.1 Olea europaea HOM05D008142 ORTHO05D009674 1.9e-18 96.7 176 37.5
MD03G1255500 Malus domestica HOM05D008142 ORTHO05D009674 2.1e-17 93.2 184 37.0
COL.COLO4_17432 Corchorus olitorius HOM05D008142 ORTHO05D009674 1.8e-16 90.1 157 42.0
FvH4_3g16940 Fragaria vesca HOM05D008142 ORTHO05D009674 1.8e-16 90.1 162 38.9
FAN11G1471 Fragaria x ananassa HOM05D008142 ORTHO05D009674 1.8e-16 90.1 162 38.9
TAR627G0610 Trochodendron aralioides HOM05D008142 ORTHO05D009674 1.8e-16 90.1 78 52.6
Prupe.4G151600 Prunus persica HOM05D008142 ORTHO05D009674 2.3e-16 89.7 179 39.1
FAN16G2943 Fragaria x ananassa HOM05D008142 ORTHO05D009674 6.7e-16 88.2 162 38.3
FAN21G3515 Fragaria x ananassa HOM05D008142 ORTHO05D009674 2.5e-15 86.3 162 38.9
Thecc.07G144400 Theobroma cacao HOM05D008142 ORTHO05D009674 5.7e-15 85.1 165 39.4
RcHm_v2.0_Chr5g0028181 Rosa chinensis HOM05D008142 ORTHO05D009674 1.6e-14 83.6 161 36.6
Potri.001G379400 Populus trichocarpa HOM05D008142 ORTHO05D009674 4.1e-13 79.0 168 36.9
Sabra16G0249900 Salix brachista HOM05D008142 ORTHO05D009674 6.9e-13 78.2 164 37.8
Ciclev10022628m.g Citrus clementina HOM05D008142 ORTHO05D009674 9.0e-13 77.8 172 37.8
Gohir.D01G033700 Gossypium hirsutum HOM05D008142 ORTHO05D009674 3.4e-12 75.9 161 36.0
Gorai.002G040600 Gossypium raimondii HOM05D008142 ORTHO05D009674 7.6e-12 74.7 174 35.6
Gorai.002G040500 Gossypium raimondii HOM05D008142 ORTHO05D009674 1.0e-11 74.3 161 36.6
PGSC0003DMG400007050 Solanum tuberosum HOM05D011950 ORTHO05D009674 1.7e-11 73.6 180 33.9
Gohir.D01G033500 Gossypium hirsutum HOM05D008142 ORTHO05D009674 2.9e-11 72.8 178 35.4
ECA236G2480 Erigeron canadensis HOM05D002418 ORTHO05D002572 3.8e-11 72.4 166 34.9
Gohir.A01G042800 Gossypium hirsutum HOM05D008142 ORTHO05D009674 3.8e-11 72.4 161 36.0
Gorai.002G040800 Gossypium raimondii HOM05D008142 ORTHO05D009674 3.8e-11 72.4 161 35.4
Gohir.A01G043100 Gossypium hirsutum HOM05D008142 ORTHO05D009674 5.0e-11 72.0 161 34.2
MSTRG.6725 Avicennia marina HOM05D008142 ORTHO05D009674 6.5e-11 71.6 166 35.5
Potri.001G379300 Populus trichocarpa HOM05D015893 ORTHO05D009674 6.5e-11 71.6 177 33.3
Gohir.D01G033400 Gossypium hirsutum HOM05D008142 ORTHO05D009674 1.4e-10 70.5 161 35.4
Gohir.A01G042900 Gossypium hirsutum HOM05D008142 ORTHO05D009674 2.5e-10 69.7 178 33.7
Gohir.A01G043000 Gossypium hirsutum HOM05D008142 ORTHO05D009674 3.2e-10 69.3 158 32.9
Lsat_1_v5_gn_7_100541 Lactuca sativa HOM05D008142 ORTHO05D009674 4.2e-10 68.9 164 34.1
MD03G1255600 Malus domestica HOM05D015893 ORTHO05D019166 5.5e-10 68.6 164 31.7
Nitab4.5_0020402g0010 Nicotiana tabacum HOM05D011950 ORTHO05D009674 5.5e-10 68.6 187 33.2
Gohir.D01G033600 Gossypium hirsutum HOM05D008142 ORTHO05D009674 7.1e-10 68.2 161 32.3
MSTRG.15018 Avicennia marina HOM05D008142 ORTHO05D009674 1.2e-09 67.4 176 33.0
Psat0s1353g0040 Pisum sativum HOM05D012055 ORTHO05D014183 1.2e-09 67.4 159 33.3
Gorai.002G040700 Gossypium raimondii HOM05D008142 ORTHO05D009674 4.6e-09 65.5 158 31.6
Nitab4.5_0000639g0100 Nicotiana tabacum HOM05D011950 ORTHO05D009674 4.6e-09 65.5 181 31.5
Peaxi162Scf00000g00523 Petunia axillaris HOM05D011950 ORTHO05D009674 4.6e-09 65.5 164 34.1
RcHm_v2.0_Chr5g0028161 Rosa chinensis HOM05D015893 ORTHO05D019166 6.1e-09 65.1 180 31.1
Glyma.13G260100 Glycine max HOM05D010689 ORTHO05D012855 1.0e-08 64.3 161 35.4
Nitab4.5_0004038g0010 Nicotiana tabacum HOM05D011950 ORTHO05D009674 1.0e-08 64.3 187 32.1
Thecc.07G144300 Theobroma cacao HOM05D023069 ORTHO05D009674 1.0e-08 64.3 145 35.9
Gorai.002G040900 Gossypium raimondii HOM05D008142 ORTHO05D009674 1.3e-08 63.9 161 31.7
Medtr2g071790 Medicago truncatula HOM05D012055 ORTHO05D014183 2.3e-08 63.2 155 34.2
Prupe.4G151500 Prunus persica HOM05D015893 ORTHO05D019166 2.3e-08 63.2 177 31.6
Lj3g0014819 Lotus japonicus HOM05D012055 ORTHO05D014183 3.0e-08 62.8 159 30.2
Ca_03397_v3 Cicer arietinum L. HOM05D012055 ORTHO05D014183 3.9e-08 62.4 166 31.9
DCAR_021049 Daucus carota HOM05D008142 ORTHO05D009674 3.9e-08 62.4 184 33.2
Psat1g009360 Pisum sativum HOM05D012055 ORTHO05D014183 3.9e-08 62.4 153 32.7
Nitab4.5_0004038g0030 Nicotiana tabacum HOM05D026636 ORTHO05D022967 1.1e-07 60.8 149 31.5
Nitab4.5_0007142g0040 Nicotiana tabacum HOM05D011950 ORTHO05D009674 1.1e-07 60.8 148 31.8
Sabra16G0249800 Salix brachista HOM05D008142 ORTHO05D009674 1.1e-07 60.8 153 34.6
Cc05_g10420 Coffea canephora HOM05D011950 ORTHO05D009674 1.5e-07 60.5 173 32.4
Gohir.A01G043200 Gossypium hirsutum HOM05D008142 ORTHO05D009674 1.5e-07 60.5 167 31.7
Medtr2g071750 Medicago truncatula HOM05D012055 ORTHO05D014183 1.9e-07 60.1 155 32.9
Glyma.15G248000 Glycine max HOM05D012055 ORTHO05D014183 2.5e-07 59.7 152 32.2
Actinidia11208 Actinidia chinensis HOM05D050066 ORTHO05D012532 3.3e-07 59.3 155 32.3
Medtr2g071740 Medicago truncatula HOM05D012055 ORTHO05D014183 4.3e-07 58.9 155 32.3
Cpa.g.sc714.2 Carica papaya HOM05D008142 ORTHO05D009674 5.7e-07 58.5 122 36.9
Oeu020030.1 Olea europaea HOM05D008142 ORTHO05D009674 5.7e-07 58.5 158 34.8
Sopen07g030160 Solanum pennellii HOM05D011950 ORTHO05D009674 7.4e-07 58.2 181 30.9
Medtr2g071760 Medicago truncatula HOM05D012055 ORTHO05D014183 9.7e-07 57.8 159 31.4
PGSC0003DMG401021252 Solanum tuberosum HOM05D011950 ORTHO05D009674 9.7e-07 57.8 157 29.9
COL.COLO4_17431 Corchorus olitorius HOM05D023069 ORTHO05D009674 1.3e-06 57.4 151 29.8
DCAR_013786 Daucus carota HOM05D019704 ORTHO05D009674 1.3e-06 57.4 163 30.7
Peaxi162Scf00047g10224 Petunia axillaris HOM05D014539 ORTHO05D017086 1.3e-06 57.4 162 27.2
COL.COLO4_17430 Corchorus olitorius HOM05D008142 ORTHO05D009674 1.6e-06 57.0 163 36.2
Glyma.15G247900 Glycine max HOM05D010689 ORTHO05D012855 2.2e-06 56.6 146 35.6
Phvul.005G061600 Phaseolus vulgaris HOM05D012055 ORTHO05D014183 2.8e-06 56.2 161 31.7
Glyma.13G260000 Glycine max HOM05D012055 ORTHO05D014183 3.7e-06 55.8 162 31.5
Sopen12g006760 Solanum pennellii HOM05D011950 ORTHO05D009674 6.3e-06 55.1 141 37.6
PGSC0003DMG400008560 Solanum tuberosum HOM05D011950 ORTHO05D009674 6.3e-06 55.1 147 34.0
Migut.M00615 Erythranthe guttata HOM05D019704 ORTHO05D009674 8.2e-06 54.7 112 33.0


User provided reference genes

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