Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g26507 Nelumbo nucifera HOM05D004468 ORTHO05D011136 1.3e-45 186.0 94 100.0
Nn3g20651 Nelumbo nucifera HOM05D004468 ORTHO05D011136 2.2e-21 105.5 63 82.5
MBI07_g15278_MAGBIO Magnolia biondii HOM05D004468 ORTHO05D011136 3.3e-17 91.7 51 84.3
MBI07_g21772_MAGBIO Magnolia biondii HOM05D004468 ORTHO05D011136 3.3e-17 91.7 51 84.3
Actinidia07680 Actinidia chinensis HOM05D004468 ORTHO05D011136 2.9e-13 78.6 48 77.1
Thecc.06G154100 Theobroma cacao HOM05D004468 ORTHO05D011136 2.9e-13 78.6 49 79.6
CiPaw.10G093600 Carya illinoinensis HOM05D004468 ORTHO05D011136 1.1e-12 76.6 49 75.5
Gohir.A10G039000 Gossypium hirsutum HOM05D004468 ORTHO05D011136 1.1e-12 76.6 49 75.5
Dinv32278 Davidia involucrata HOM05D004468 ORTHO05D011136 1.9e-12 75.9 48 77.1
Gohir.D10G039800 Gossypium hirsutum HOM05D004468 ORTHO05D011136 1.9e-12 75.9 49 77.6
Gohir.A05G150100 Gossypium hirsutum HOM05D004468 ORTHO05D011136 2.5e-12 75.5 49 73.5
Gohir.D05G152700 Gossypium hirsutum HOM05D004468 ORTHO05D011136 2.5e-12 75.5 49 73.5
CiPaw.09G126700 Carya illinoinensis HOM05D004468 ORTHO05D011136 3.2e-12 75.1 49 73.5
Manes.15G118900 Manihot esculenta HOM05D004468 ORTHO05D011136 3.2e-12 75.1 49 75.5
Sed0005922 Sechium edule HOM05D004468 ORTHO05D011136 5.5e-12 74.3 51 76.5
Prupe.4G077000 Prunus persica HOM05D004468 ORTHO05D011136 7.2e-12 73.9 49 75.5
Sed0010006 Sechium edule HOM05D004468 ORTHO05D011136 7.2e-12 73.9 51 70.6
Solyc02g070875.1 Solanum lycopersicum HOM05D004468 ORTHO05D011136 9.4e-12 73.6 50 70.0
Peaxi162Scf00291g00015 Petunia axillaris HOM05D004468 ORTHO05D008180 1.2e-11 73.2 50 70.0
Potri.011G080100 Populus trichocarpa HOM05D004468 ORTHO05D011136 1.2e-11 73.2 49 69.4
RcHm_v2.0_Chr5g0013401 Rosa chinensis HOM05D004468 ORTHO05D011136 3.6e-11 71.6 49 69.4
Glyma.08G084200 Glycine max HOM05D004468 ORTHO05D011136 6.1e-11 70.9 49 75.5
Manes.17G067500 Manihot esculenta HOM05D004468 ORTHO05D011136 6.1e-11 70.9 49 69.4
MD05G1288900 Malus domestica HOM05D004468 ORTHO05D011136 1.4e-10 69.7 49 69.4
MBI10_g27416_MAGBIO Magnolia biondii HOM05D004468 ORTHO05D011136 1.8e-10 69.3 78 52.6
Phvul.002G194350 Phaseolus vulgaris HOM05D004468 ORTHO05D011136 2.3e-10 68.9 49 71.4
CsaV3_6G051550 Cucumis sativus L. HOM05D004468 ORTHO05D011136 3.0e-10 68.6 48 64.6
MD10G1265000 Malus domestica HOM05D004468 ORTHO05D011136 5.1e-10 67.8 49 69.4
ECA236G0629 Erigeron canadensis HOM05D004468 ORTHO05D011136 6.7e-10 67.4 48 68.8
ClCG01G024410 Citrullus lanatus HOM05D004468 ORTHO05D011136 2.5e-09 65.5 49 63.3
CDE08G0998 Ceratophyllum demersum HOM05D004468 ORTHO05D011136 7.4e-09 63.9 48 62.5
Glyma.05G129500 Glycine max HOM05D004468 ORTHO05D011136 1.7e-08 62.8 49 69.4
EL10Ac8g19752 Beta vulgaris HOM05D004468 ORTHO05D011136 8.2e-08 60.5 51 58.8
SGA_v2.0_scaffold106G30633 Striga asiatica HOM05D004468 ORTHO05D011136 1.4e-07 59.7 53 58.5
Ah.01g024020 Amaranthus hybridus HOM05D001755 ORTHO05D006340 2.4e-07 58.9 59 55.9
Hund21515 Selenicereus undatus HOM05D004468 ORTHO05D008180 1.2e-06 56.6 47 55.3
Sp1g25800 Schrenkiella parvula HOM05D004468 ORTHO05D011136 1.5e-06 56.2 82 46.3
Potri.007G112900 Populus trichocarpa HOM05D001755 ORTHO05D001665 4.5e-06 54.7 50 58.0
BraA07t28804Z Brassica rapa HOM05D004468 ORTHO05D008180 5.9e-06 54.3 41 63.4
CAN.G523.28 Capsicum annuum HOM05D001755 ORTHO05D001665 7.7e-06 53.9 33 78.8


User provided reference genes

Program Settings