Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g26452 Nelumbo nucifera HOM05D007196 ORTHO05D009100 5.7e-46 187.2 93 100.0
TAR375G0687 Trochodendron aralioides HOM05D007196 ORTHO05D009100 4.7e-16 87.8 92 58.7
MBI12_g21133_MAGBIO Magnolia biondii HOM05D007196 ORTHO05D009100 2.2e-13 79.0 92 54.3
QL12p039322 Quercus lobata HOM05D007196 ORTHO05D009100 2.2e-13 79.0 97 52.6
Haze_13814 Corylus avellana HOM05D007196 ORTHO05D009100 2.9e-13 78.6 94 53.2
CiPaw.03G098100 Carya illinoinensis HOM05D007196 ORTHO05D009100 3.8e-13 78.2 94 50.0
PSO782G2298 Papaver somniferum HOM05D007196 ORTHO05D009100 8.4e-13 77.0 89 48.3
Cfa008239 Carpinus fangiana HOM05D007196 ORTHO05D009100 1.4e-12 76.3 94 52.1
PSO478G0391 Papaver somniferum HOM05D007196 ORTHO05D009100 1.9e-12 75.9 89 47.2
Dinv08000 Davidia involucrata HOM05D007196 ORTHO05D009100 4.2e-12 74.7 93 49.5
CSS0025032 Camellia sinensis var. sinensis HOM05D007196 ORTHO05D009100 7.1e-12 73.9 99 49.5
Hma1.2p1_0488F.1_g163760 Hydrangea macrophylla HOM05D007196 ORTHO05D009100 2.7e-11 72.0 40 87.5
GSVIVG01018482001 Vitis vinifera HOM05D007196 ORTHO05D009100 3.5e-11 71.6 59 62.7
Dinv28524 Davidia involucrata HOM05D007196 ORTHO05D009100 4.6e-11 71.2 40 87.5
Actinidia13526 Actinidia chinensis HOM05D007196 ORTHO05D009100 7.8e-11 70.5 67 62.7
vmacro06759 Vaccinium macrocarpon HOM05D007196 ORTHO05D009100 7.8e-11 70.5 38 89.5
Glyma.09G152100 Glycine max HOM05D007196 ORTHO05D009100 1.0e-10 70.1 94 45.7
HanXRQChr07g0206311 Helianthus annuus HOM05D007196 ORTHO05D009100 1.0e-10 70.1 64 62.5
Eucgr.K00137 Eucalyptus grandis HOM05D007196 ORTHO05D009100 1.7e-10 69.3 94 51.1
Manes.14G032200 Manihot esculenta HOM05D007196 ORTHO05D009100 1.7e-10 69.3 41 80.5
Phvul.004G125800 Phaseolus vulgaris HOM05D007196 ORTHO05D009100 1.7e-10 69.3 94 44.7
Rhsim03G0172900 Rhododendron simsii HOM05D007196 ORTHO05D009100 5.1e-10 67.8 38 84.2
Cc02_g03760 Coffea canephora HOM05D007196 ORTHO05D009100 6.6e-10 67.4 40 75.0
Migut.F00414 Erythranthe guttata HOM05D007196 ORTHO05D009100 6.6e-10 67.4 40 77.5
Nitab4.5_0003984g0020 Nicotiana tabacum HOM05D007196 ORTHO05D009100 6.6e-10 67.4 40 80.0
Sabra12G0098300 Salix brachista HOM05D007196 ORTHO05D009100 6.6e-10 67.4 60 65.0
VMungo0464G1496 Vigna mungo HOM05D007196 ORTHO05D009100 6.6e-10 67.4 93 44.1
CAN.G1481.5 Capsicum annuum HOM05D007196 ORTHO05D009100 8.7e-10 67.0 57 63.2
Gohir.A11G008400 Gossypium hirsutum HOM05D007196 ORTHO05D009100 8.7e-10 67.0 82 52.4
Aqoxy7G00560 Aquilegia oxysepala HOM05D007196 ORTHO05D009100 1.1e-09 66.6 92 44.6
Peaxi162Scf00192g00828 Petunia axillaris HOM05D007196 ORTHO05D009100 1.1e-09 66.6 40 80.0
Potri.015G132500 Populus trichocarpa HOM05D007196 ORTHO05D009100 1.1e-09 66.6 60 65.0
Gohir.D11G007600 Gossypium hirsutum HOM05D007196 ORTHO05D009100 1.5e-09 66.2 56 67.9
Gorai.007G009100 Gossypium raimondii HOM05D007196 ORTHO05D009100 1.5e-09 66.2 56 67.9
Potri.012G130600 Populus trichocarpa HOM05D007196 ORTHO05D009100 1.5e-09 66.2 60 66.7
PGSC0003DMG400031014 Solanum tuberosum HOM05D007196 ORTHO05D009100 1.9e-09 65.9 40 77.5
Duzib205G0862 Durio zibethinus HOM05D007196 ORTHO05D009100 2.5e-09 65.5 56 66.1
Duzib205G1842 Durio zibethinus HOM05D007196 ORTHO05D009100 2.5e-09 65.5 56 66.1
Glyma.16G203100 Glycine max HOM05D007196 ORTHO05D009100 3.3e-09 65.1 94 45.7
Sed0001882 Sechium edule HOM05D007196 ORTHO05D009100 3.3e-09 65.1 38 84.2
Cpa.g.sc3.256 Carica papaya HOM05D007196 ORTHO05D009100 4.3e-09 64.7 96 50.0
AUR62016084 Chenopodium quinoa HOM05D007196 ORTHO05D009100 4.3e-09 64.7 40 77.5
Sopen03g003020 Solanum pennellii HOM05D007196 ORTHO05D009100 4.3e-09 64.7 40 75.0
Solyc03g007030.3 Solanum lycopersicum HOM05D007196 ORTHO05D009100 5.6e-09 64.3 40 75.0
EL10Ac3g05770 Beta vulgaris HOM05D007196 ORTHO05D009100 7.3e-09 63.9 57 57.9
AUR62021293 Chenopodium quinoa HOM05D007196 ORTHO05D009100 9.6e-09 63.5 40 75.0
Prupe.2G283900 Prunus persica HOM05D007196 ORTHO05D009100 9.6e-09 63.5 39 84.6
SalBow4G2038 Salvia bowleyana HOM05D007196 ORTHO05D009100 9.6e-09 63.5 40 70.0
COL.COLO4_14199 Corchorus olitorius HOM05D007196 ORTHO05D009100 1.3e-08 63.2 94 44.7
FAN06G4298 Fragaria x ananassa HOM05D007196 ORTHO05D009100 1.3e-08 63.2 47 68.1
unitig_52.g17755 Utricularia gibba HOM05D007196 ORTHO05D009100 1.3e-08 63.2 47 57.4
ATR0757G208 Amborella trichopoda HOM05D007196 ORTHO05D009100 1.6e-08 62.8 35 88.6
Cc00_g08970 Coffea canephora HOM05D007196 ORTHO05D009100 1.6e-08 62.8 39 74.4
Thecc.03G163500 Theobroma cacao HOM05D007196 ORTHO05D009100 1.6e-08 62.8 40 80.0
ClCG01G005210 Citrullus lanatus HOM05D007196 ORTHO05D009100 2.8e-08 62.0 94 40.4
PGR142G2119 Punica granatum HOM05D007196 ORTHO05D009100 2.8e-08 62.0 43 76.7
CANSAT21G1841 Cannabis sativa HOM05D007196 ORTHO05D009100 3.6e-08 61.6 73 49.3
MELO3C005405.2 Cucumis melo HOM05D007196 ORTHO05D009100 3.6e-08 61.6 45 71.1
DCAR_018131 Daucus carota HOM05D007196 ORTHO05D009100 3.6e-08 61.6 40 72.5
FAN10G3863 Fragaria x ananassa HOM05D007196 ORTHO05D009100 3.6e-08 61.6 87 44.8
FAN06G1802 Fragaria x ananassa HOM05D007196 ORTHO05D009100 4.8e-08 61.2 42 73.8
HPP92_007351 Vanilla planifolia HOM05D007196 ORTHO05D009100 4.8e-08 61.2 50 68.0
arahy.Tifrunner.gnm1.ann1.S0TT2Y Arachis hypogaea HOM05D007196 ORTHO05D009100 6.2e-08 60.8 47 68.1
CDE02G2935 Ceratophyllum demersum HOM05D007196 ORTHO05D009100 6.2e-08 60.8 92 42.4
FvH4_7g28320 Fragaria vesca HOM05D007196 ORTHO05D009100 6.2e-08 60.8 105 42.9
TWI14G0139 Tripterygium wilfordii HOM05D007196 ORTHO05D009100 6.2e-08 60.8 94 43.6
Atru.chr1.612 Acer truncatum HOM05D007196 ORTHO05D009100 8.1e-08 60.5 41 73.2
Ciclev10006560m.g Citrus clementina HOM05D007196 ORTHO05D009100 8.1e-08 60.5 42 76.2
Duzib068G1365 Durio zibethinus HOM05D007196 ORTHO05D009100 8.1e-08 60.5 40 75.0
Lsat_1_v5_gn_2_129760 Lactuca sativa HOM05D007196 ORTHO05D009100 8.1e-08 60.5 44 68.2
BraA10t43033Z Brassica rapa HOM05D007196 ORTHO05D009100 1.1e-07 60.1 77 50.6
Carub.0008s1174 Capsella rubella HOM05D007196 ORTHO05D009100 1.1e-07 60.1 64 54.7
ECA238G2893 Erigeron canadensis HOM05D007196 ORTHO05D009100 1.1e-07 60.1 46 71.7
Lj2g0025497 Lotus japonicus HOM05D007196 ORTHO05D009100 1.1e-07 60.1 98 40.8
RcHm_v2.0_Chr1g0375291 Rosa chinensis HOM05D007196 ORTHO05D009100 1.1e-07 60.1 42 73.8
CDE11G1107 Ceratophyllum demersum HOM05D007196 ORTHO05D009100 1.4e-07 59.7 41 65.9
CsaV3_5G005490 Cucumis sativus L. HOM05D007196 ORTHO05D009100 1.4e-07 59.7 46 69.6
MD01G1187500 Malus domestica HOM05D007196 ORTHO05D009100 1.4e-07 59.7 39 79.5
FAN03G0205 Fragaria x ananassa HOM05D007196 ORTHO05D009100 1.8e-07 59.3 42 73.8
FAN03G1444 Fragaria x ananassa HOM05D000077 ORTHO05D000981 1.8e-07 59.3 42 73.8
THA.LOC104811505 Tarenaya hassleriana HOM05D007196 ORTHO05D009100 1.8e-07 59.3 42 73.8
A10p09580 Brassica napus HOM05D007196 ORTHO05D009100 3.1e-07 58.5 67 53.7
TWI23G0806 Tripterygium wilfordii HOM05D007196 ORTHO05D009100 4.0e-07 58.2 49 61.2
AL8G25980 Arabidopsis lyrata HOM05D007196 ORTHO05D009100 6.9e-07 57.4 44 68.2
AT5G51720 Arabidopsis thaliana HOM05D007196 ORTHO05D009100 6.9e-07 57.4 68 50.0
CARHR264580 Cardamine hirsuta HOM05D007196 ORTHO05D009100 6.9e-07 57.4 44 68.2
BcaB08g35520 Brassica carinata HOM05D007196 ORTHO05D009100 1.2e-06 56.6 44 68.2
BcaC04g20641 Brassica carinata HOM05D007196 ORTHO05D009100 1.2e-06 56.6 44 68.2
C09p41140 Brassica napus HOM05D007196 ORTHO05D009100 1.2e-06 56.6 44 68.2
BolC9t56992H Brassica oleracea HOM05D007196 ORTHO05D009100 1.2e-06 56.6 44 68.2
Psat1g109280 Pisum sativum HOM05D007196 ORTHO05D009100 1.2e-06 56.6 45 62.2
Lalb_Chr19g0131261 Lupinus albus HOM05D007196 ORTHO05D009100 1.5e-06 56.2 42 66.7
Zm00001eb320190 Zea mays HOM05D007196 ORTHO05D009100 2.0e-06 55.8 52 61.5
Os07g0467200 Oryza sativa ssp. japonica HOM05D007196 ORTHO05D009100 2.6e-06 55.5 55 58.2
Thhalv10015074m.g Eutrema salsugineum HOM05D007196 ORTHO05D009100 3.4e-06 55.1 45 64.4
Sp6g13940 Schrenkiella parvula HOM05D007196 ORTHO05D009100 3.4e-06 55.1 44 63.6
TPR.G27717 Trifolium pratense HOM05D007196 ORTHO05D009100 4.4e-06 54.7 45 60.0


User provided reference genes

Program Settings