Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g26440 Nelumbo nucifera HOM05D007548 ORTHO05D009527 2.3e-174 615.5 334 100.0
Nn1g01184 Nelumbo nucifera HOM05D007548 ORTHO05D009527 1.0e-52 211.5 278 52.5
TAR636G2044 Trochodendron aralioides HOM05D007548 ORTHO05D009527 8.6e-52 208.4 332 45.2
Duzib068G0425 Durio zibethinus HOM05D007548 ORTHO05D009527 2.2e-47 193.7 329 41.6
Thecc.03G162900 Theobroma cacao HOM05D007548 ORTHO05D009527 5.8e-40 169.1 332 38.9
FvH4_7g28270 Fragaria vesca HOM05D007548 ORTHO05D009527 6.4e-39 165.6 328 39.0
FAN03G1824 Fragaria x ananassa HOM05D007548 ORTHO05D009527 6.4e-39 165.6 328 39.0
FAN06G3028 Fragaria x ananassa HOM05D007548 ORTHO05D009527 6.4e-39 165.6 328 39.0
FAN06G3476 Fragaria x ananassa HOM05D007548 ORTHO05D009527 6.4e-39 165.6 328 39.0
Haze_13820 Corylus avellana HOM05D007548 ORTHO05D009527 3.2e-38 163.3 340 38.8
Potri.015G132000 Populus trichocarpa HOM05D007548 ORTHO05D009527 9.3e-38 161.8 341 38.4
Prupe.2G283000 Prunus persica HOM05D007548 ORTHO05D009527 1.2e-37 161.4 324 40.4
CiPaw.03G097400 Carya illinoinensis HOM05D007548 ORTHO05D009527 4.6e-37 159.5 339 38.6
TWI39G0023 Tripterygium wilfordii HOM05D007548 ORTHO05D009527 5.1e-36 156.0 327 39.8
Manes.06G138600 Manihot esculenta HOM05D007548 ORTHO05D009527 6.7e-36 155.6 343 37.0
Actinidia13550 Actinidia chinensis HOM05D007548 ORTHO05D009527 1.3e-34 151.4 335 37.6
Oeu021734.1 Olea europaea HOM05D007548 ORTHO05D009527 6.2e-34 149.1 330 38.8
Gorai.008G283300 Gossypium raimondii HOM05D007548 ORTHO05D009527 1.1e-33 148.3 309 38.2
Gohir.A12G263800 Gossypium hirsutum HOM05D007548 ORTHO05D009527 1.4e-33 147.9 311 37.9
Oeu021733.1 Olea europaea HOM05D007548 ORTHO05D009527 1.4e-33 147.9 330 38.8
SalBow4G1498 Salvia bowleyana HOM05D007548 ORTHO05D009527 1.4e-33 147.9 342 39.2
Gohir.D12G264100 Gossypium hirsutum HOM05D007548 ORTHO05D009527 5.3e-33 146.0 309 34.6
Atru.chr1.619 Acer truncatum HOM05D007548 ORTHO05D009527 9.0e-33 145.2 308 38.0
Actinidia25043 Actinidia chinensis HOM05D007548 ORTHO05D009527 1.5e-32 144.4 335 37.3
Ciclev10007148m.g Citrus clementina HOM05D007548 ORTHO05D009527 5.8e-32 142.5 284 40.5
FAN01G2764 Fragaria x ananassa HOM05D007548 ORTHO05D009527 7.6e-32 142.1 333 36.6
DCAR_018129 Daucus carota HOM05D007548 ORTHO05D009527 1.4e-30 137.9 333 37.2
Cc02_g03840 Coffea canephora HOM05D007548 ORTHO05D009527 4.2e-30 136.3 343 36.4
Rhsim03G0172300 Rhododendron simsii HOM05D007548 ORTHO05D009527 7.1e-30 135.6 341 38.4
FAN03G2953 Fragaria x ananassa HOM05D007548 ORTHO05D009527 9.3e-30 135.2 290 38.3
Cfa008236 Carpinus fangiana HOM05D007548 ORTHO05D009527 1.6e-29 134.4 343 31.8
RcHm_v2.0_Chr1g0375221 Rosa chinensis HOM05D007548 ORTHO05D009527 4.6e-29 132.9 280 38.9
PSO782G0883 Papaver somniferum HOM05D007548 ORTHO05D009527 1.5e-27 127.9 338 36.4
MSTRG.27166 Avicennia marina HOM05D007548 ORTHO05D009527 2.5e-27 127.1 334 39.5
Peaxi162Scf00192g00096 Petunia axillaris HOM05D007548 ORTHO05D009527 2.1e-26 124.0 342 34.2
Aa31LG3G8110 Aethionema arabicum HOM05D007548 ORTHO05D009527 2.8e-26 123.6 336 33.3
COL.COLO4_14190 Corchorus olitorius HOM05D007548 ORTHO05D009527 8.1e-26 122.1 269 38.7
CANSAT80G1542 Cannabis sativa HOM05D007548 ORTHO05D009527 1.8e-25 120.9 287 38.7
Dinv07997 Davidia involucrata HOM05D007548 ORTHO05D009527 4.5e-24 116.3 238 38.7
Nitab4.5_0008495g0030 Nicotiana tabacum HOM05D007548 ORTHO05D009527 5.8e-24 115.9 351 32.2
Glyma.10G242400 Glycine max HOM05D007548 ORTHO05D009527 1.7e-23 114.4 310 35.2
Carub.0008s1170 Capsella rubella HOM05D007548 ORTHO05D009527 2.2e-23 114.0 346 33.2
Nitab4.5_0000072g0300 Nicotiana tabacum HOM05D007548 ORTHO05D009527 3.8e-23 113.2 340 32.9
SalBow4G2379 Salvia bowleyana HOM05D007548 ORTHO05D009527 3.8e-23 113.2 307 36.5
CARHR264530 Cardamine hirsuta HOM05D007548 ORTHO05D009527 8.4e-23 112.1 340 33.8
Eucgr.K00142 Eucalyptus grandis HOM05D007548 ORTHO05D009527 1.1e-22 111.7 301 35.2
Lj5g0018367 Lotus japonicus HOM05D007548 ORTHO05D009527 7.1e-22 109.0 327 35.8
THA.LOC104798720 Tarenaya hassleriana HOM05D007548 ORTHO05D009527 1.6e-21 107.8 332 33.4
AL8G25930 Arabidopsis lyrata HOM05D007548 ORTHO05D009527 2.1e-21 107.5 340 33.2
AT5G51680 Arabidopsis thaliana HOM05D007548 ORTHO05D009527 4.6e-21 106.3 361 32.1
EL10Ac3g05788 Beta vulgaris HOM05D007548 ORTHO05D009527 1.3e-20 104.8 317 32.2
Lj8A35G80 Lonicera japonica HOM05D007548 ORTHO05D009527 1.8e-20 104.4 317 33.1
Aqoxy7G00579 Aquilegia oxysepala HOM05D007548 ORTHO05D009527 1.9e-19 100.9 350 30.9
Thhalv10014011m.g Eutrema salsugineum HOM05D007548 ORTHO05D009527 1.9e-19 100.9 351 31.6
Sopen03g003070 Solanum pennellii HOM05D007548 ORTHO05D009527 1.9e-19 100.9 339 33.0
Cpa.g.sc13.212 Carica papaya HOM05D007548 ORTHO05D009527 2.5e-19 100.5 335 33.1
AUR62035044 Chenopodium quinoa HOM05D007548 ORTHO05D009527 4.3e-19 99.8 319 31.3
Migut.F00422 Erythranthe guttata HOM05D007548 ORTHO05D009527 4.3e-19 99.8 328 34.5
Glyma.20G151700 Glycine max HOM05D007548 ORTHO05D009527 1.3e-18 98.2 316 33.5
PGSC0003DMG400031012 Solanum tuberosum HOM05D007548 ORTHO05D009527 2.8e-18 97.1 339 32.7
Medtr1g102510 Medicago truncatula HOM05D007548 ORTHO05D009527 3.7e-18 96.7 306 28.4
AUR62016096 Chenopodium quinoa HOM05D007548 ORTHO05D009527 4.8e-18 96.3 314 31.8
Ah.07g208330 Amaranthus hybridus HOM05D007548 ORTHO05D009527 2.4e-17 94.0 311 32.5
Manes.14G032600 Manihot esculenta HOM05D007548 ORTHO05D009527 1.2e-16 91.7 292 29.1
GSVIVG01018495001 Vitis vinifera HOM05D007548 ORTHO05D009527 1.2e-16 91.7 126 46.0
VMungo0720G2396 Vigna mungo HOM05D007548 ORTHO05D009527 2.6e-16 90.5 267 34.5
SGA_v2.0_scaffold2G01130 Striga asiatica HOM05D007548 ORTHO05D009527 5.9e-16 89.4 326 33.1
Phvul.007G063100 Phaseolus vulgaris HOM05D007548 ORTHO05D009527 7.6e-16 89.0 321 30.8
PGR142G1046 Punica granatum HOM05D007548 ORTHO05D009527 1.1e-14 85.1 210 33.3
Sp6g13900 Schrenkiella parvula HOM05D007548 ORTHO05D009527 3.2e-14 83.6 145 35.9
Solyc03g007080.4 Solanum lycopersicum HOM05D007548 ORTHO05D009527 4.2e-14 83.2 246 32.9
PSO478G0091 Papaver somniferum HOM05D007548 ORTHO05D009527 2.7e-13 80.5 283 33.2
Psat6g202320 Pisum sativum HOM05D007548 ORTHO05D009527 4.6e-13 79.7 144 37.5
HanXRQChr05g0141371 Helianthus annuus HOM05D007548 ORTHO05D009527 3.0e-12 77.0 324 29.9
Lsat_1_v5_gn_8_8041 Lactuca sativa HOM05D007548 ORTHO05D009527 1.9e-11 74.3 340 29.7
TPR.G26079 Trifolium pratense HOM05D007548 ORTHO05D009527 1.9e-11 74.3 130 37.7
BcaB08g35518 Brassica carinata HOM05D007548 ORTHO05D009527 3.3e-11 73.6 329 30.4
Lalb_Chr21g0304861 Lupinus albus HOM05D007548 ORTHO05D009527 2.8e-10 70.5 307 31.6
unitig_37.g12505 Utricularia gibba HOM05D007548 ORTHO05D009527 2.8e-10 70.5 299 30.1
Ah.13g067520 Amaranthus hybridus HOM05D007548 ORTHO05D009527 6.3e-10 69.3 264 29.2
BcaC04g20644 Brassica carinata HOM05D007548 ORTHO05D009527 6.3e-10 69.3 341 28.2
C09p41110 Brassica napus HOM05D007548 ORTHO05D009527 6.3e-10 69.3 341 28.2
BolC9t56989H Brassica oleracea HOM05D007548 ORTHO05D009527 6.3e-10 69.3 341 28.2
Sc25g0000160 Simmondsia chinensis HOM05D007548 ORTHO05D009527 1.8e-09 67.8 311 27.7
A10p09560 Brassica napus HOM05D007548 ORTHO05D009527 3.1e-09 67.0 342 26.9
BraA10t43031Z Brassica rapa HOM05D007548 ORTHO05D009527 4.1e-09 66.6 342 27.8
SGA_v2.0_scaffold486G52377 Striga asiatica HOM05D007548 ORTHO05D009527 2.5e-06 57.4 337 28.2
MBI17_g42494_MAGBIO Magnolia biondii HOM05D007548 ORTHO05D009527 7.2e-06 55.8 165 33.3
arahy.Tifrunner.gnm1.ann1.J4U887 Arachis hypogaea HOM05D001870 ORTHO05D001797 9.4e-06 55.5 299 29.1


User provided reference genes

Program Settings