Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 0.0e+00 1623.2 919 100.0
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 2.2e-283 979.2 929 63.3
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 1.3e-278 963.4 929 64.4
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 1.4e-248 863.6 933 56.8
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 1.1e-237 827.4 918 56.4
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 1.5e-234 817.0 921 54.3
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 1.8e-229 800.0 932 54.4
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 4.7e-225 785.4 908 54.4
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 2.3e-224 783.1 906 54.9
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 4.9e-222 775.4 915 55.3
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 1.1e-218 764.2 915 55.2
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 4.3e-218 762.3 920 52.0
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 7.3e-218 761.5 928 54.4
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 1.1e-213 747.7 932 53.6
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 4.1e-213 745.7 807 56.9
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 2.3e-211 740.0 908 52.1
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 1.1e-210 737.6 874 54.8
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 2.4e-208 729.9 924 51.5
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 2.4e-208 729.9 962 51.1
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 3.1e-208 729.6 911 54.7
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 9.9e-207 724.5 967 51.1
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 9.9e-207 724.5 923 52.8
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 7.1e-205 718.4 913 51.5
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 1.2e-204 717.6 965 49.7
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 1.9e-202 710.3 984 50.3
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 2.5e-202 709.9 898 52.3
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 1.2e-201 707.6 845 54.1
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.6e-201 707.2 924 50.3
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 3.6e-201 706.1 925 50.1
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.8e-200 703.7 932 49.2
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 5.2e-200 702.2 879 51.2
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 7.6e-199 698.4 930 52.5
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 2.4e-197 693.3 955 49.8
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 9.3e-197 691.4 900 50.2
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 3.5e-196 689.5 886 51.2
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 4.6e-196 689.1 964 48.1
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 7.8e-196 688.3 887 50.5
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 2.3e-195 686.8 961 49.1
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 5.1e-195 685.6 979 47.0
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 1.9e-194 683.7 869 51.3
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 1.3e-193 681.0 916 49.6
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 1.6e-193 680.6 862 50.1
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 1.8e-192 677.2 798 52.3
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 5.8e-191 672.2 931 49.5
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 1.3e-190 671.0 894 49.0
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 2.4e-189 666.8 875 51.5
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 3.5e-188 662.9 882 50.0
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 3.5e-188 662.9 882 50.0
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 6.0e-188 662.1 930 49.4
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.8e-187 660.6 909 49.4
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 8.7e-187 658.3 886 50.6
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 7.4e-186 655.2 922 47.1
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 9.6e-186 654.8 909 49.2
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 1.6e-185 654.1 908 49.0
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 2.8e-185 653.3 1002 46.6
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 1.4e-184 651.0 849 50.9
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.4e-184 651.0 909 49.0
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 2.4e-184 650.2 917 49.6
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 2.4e-184 650.2 901 48.5
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 2.0e-183 647.1 886 49.2
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 1.3e-182 644.4 925 47.4
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 3.8e-182 642.9 872 50.1
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 1.9e-178 630.6 986 44.7
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 2.5e-178 630.2 948 48.3
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 3.3e-178 629.8 918 47.2
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 5.6e-178 629.0 908 47.4
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 9.6e-178 628.2 934 46.4
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 1.1e-176 624.8 960 44.5
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 2.4e-176 623.6 926 46.1
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 3.1e-176 623.2 795 50.8
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 2.6e-175 620.2 758 51.3
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 1.0e-171 608.2 877 49.3
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 6.7e-171 605.5 925 47.4
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 2.5e-170 603.6 743 54.9
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 2.4e-168 597.0 925 45.7
Os03g0127600 Oryza sativa ssp. japonica HOM05D004001 ORTHO05D004559 5.3e-168 595.9 888 45.8
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 1.9e-165 587.4 753 53.4
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 8.8e-163 578.6 929 43.8
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 2.5e-162 577.0 870 45.5
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 3.7e-161 573.2 935 44.1
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 9.1e-160 568.5 933 44.7
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 2.6e-159 567.0 926 44.1
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 4.2e-157 559.7 835 47.1
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 2.3e-155 553.9 942 43.4
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 4.4e-154 549.7 916 42.0
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 4.4e-154 549.7 899 42.7
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 9.7e-154 548.5 932 42.5
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 3.4e-151 540.0 849 43.9
Zm00001eb403560 Zea mays HOM05D004001 ORTHO05D004559 2.2e-150 537.3 907 42.4
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 4.2e-149 533.1 917 42.5
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 1.2e-148 531.6 877 42.9
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 2.1e-148 530.8 885 42.1
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 8.8e-147 525.4 917 41.8
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 3.1e-144 516.9 914 41.7
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 7.0e-144 515.8 924 42.5
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 7.7e-143 512.3 889 43.2
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 1.3e-142 511.5 917 41.0
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 2.9e-142 510.4 915 40.8
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 1.5e-141 508.1 909 40.5
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 1.5e-141 508.1 938 41.5
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 3.0e-139 500.4 915 41.1
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 6.7e-139 499.2 903 45.0
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 1.5e-138 498.0 503 57.1
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 9.7e-138 495.4 909 40.9
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 1.7e-137 494.6 901 40.4
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 5.3e-136 489.6 895 40.2
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 9.1e-136 488.8 901 40.1
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 9.1e-136 488.8 783 44.6
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 7.7e-135 485.7 962 39.1
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 3.6e-132 476.9 842 41.7
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 2.3e-126 457.6 922 40.8
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 9.2e-120 435.6 869 37.9
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 3.5e-119 433.7 544 50.0
HPP92_018394 Vanilla planifolia HOM05D004001 ORTHO05D004559 1.3e-113 415.2 687 47.2
SEGI_05063 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 1.6e-103 381.7 841 36.6
DCAR_006877 Daucus carota HOM05D004001 ORTHO05D004559 4.6e-87 327.0 483 46.2
unitig_31.g34038 Utricularia gibba HOM05D004001 ORTHO05D004559 8.4e-81 306.2 615 37.4
SalBow3G1117 Salvia bowleyana HOM05D004001 ORTHO05D004559 2.4e-75 288.1 231 64.1
AagrBONN_evm.TU.Sc2ySwM_362.1643 Anthoceros agrestis HOM05D004001 ORTHO05D004559 3.1e-75 287.7 761 32.3
CSS0022656 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 1.7e-73 282.0 457 46.2
DCAR_006876 Daucus carota HOM05D004001 ORTHO05D004559 5.4e-72 276.9 426 46.7
VMungo1383G1498 Vigna mungo HOM05D004001 ORTHO05D004559 1.1e-69 269.2 402 51.2
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 2.5e-69 268.1 535 38.5
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 3.3e-69 267.7 426 43.0
Actinidia33460 Actinidia chinensis HOM05D004001 ORTHO05D004559 4.2e-64 250.8 184 69.6
Mapoly0005s0201 Marchantia polymorpha HOM05D004001 ORTHO05D004559 1.6e-55 222.2 623 32.3
vmacro13387 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 1.5e-50 205.7 187 60.4
VMungo1383G3044 Vigna mungo HOM05D004001 ORTHO05D004559 2.4e-43 181.8 144 61.8
SEGI_21780 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 8.8e-38 163.3 660 32.6
Mapoly0048s0074 Marchantia polymorpha HOM05D004001 ORTHO05D004559 4.5e-34 151.0 239 39.7
Pp3c5_28010 Physcomitrium patens HOM05D004001 ORTHO05D004559 2.9e-33 148.3 1026 24.3
CBR_g40168 Chara braunii HOM05D004001 ORTHO05D004559 6.5e-33 147.1 624 25.0
Oeu005774.1 Olea europaea HOM05D004001 ORTHO05D004559 2.1e-31 142.1 213 48.4
Rhsim07G0026800 Rhododendron simsii HOM05D004001 ORTHO05D004559 2.3e-30 138.7 250 44.0
Hma1.2p1_1793F.1_g302630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 3.3e-29 134.8 97 66.0
Hma1.2p1_3528F.1_g336625 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 3.3e-29 134.8 97 66.0
arahy.Tifrunner.gnm1.ann1.K6PBMX Arachis hypogaea HOM05D004001 ORTHO05D004559 2.2e-28 132.1 166 48.2
Hma1.2p1_1793F.1_g302640 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 4.1e-27 127.9 156 50.0
arahy.Tifrunner.gnm1.ann1.DK59KL Arachis hypogaea HOM05D004001 ORTHO05D004559 1.3e-25 122.9 166 46.4
arahy.Tifrunner.gnm1.ann1.FJEF2G Arachis hypogaea HOM05D004001 ORTHO05D004559 6.5e-25 120.6 203 45.3
arahy.Tifrunner.gnm1.ann1.LXQN6Z Arachis hypogaea HOM05D004001 ORTHO05D004559 1.0e-22 113.2 229 39.3
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 2.7e-18 98.6 109 51.4
TWI56G1146 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.0e-14 86.7 167 37.1
TWI56G0921 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.4e-14 86.3 167 37.1
TWI56G1317 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.4e-14 86.3 167 37.1
SMO147G0240 Selaginella moellendorffii HOM05D004001 ORTHO05D004559 2.3e-14 85.5 301 27.2
TWI56G0254 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 3.0e-14 85.1 161 37.3
TWI56G0444 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 3.0e-14 85.1 159 36.5
TWI56G1263 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 3.0e-14 85.1 161 37.3
Cpa.g.sc18.133 Carica papaya HOM05D004001 ORTHO05D004559 8.8e-14 83.6 300 31.3
vmacro22718 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 3.7e-12 78.2 45 86.7
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 2.7e-10 72.0 203 33.0
arahy.Tifrunner.gnm1.ann1.7YWS89 Arachis hypogaea HOM05D004001 ORTHO05D004559 4.5e-10 71.2 418 24.4
arahy.Tifrunner.gnm1.ann1.8X1DD2 Arachis hypogaea HOM05D004001 ORTHO05D004559 7.7e-10 70.5 97 46.4
Psat6g122920 Pisum sativum HOM05D004001 ORTHO05D004559 2.3e-09 68.9 42 78.6
arahy.Tifrunner.gnm1.ann1.Y88425 Arachis hypogaea HOM05D004001 ORTHO05D004559 2.9e-09 68.6 50 64.0
Dinv00153 Davidia involucrata HOM05D004001 ORTHO05D004559 3.8e-09 68.2 57 56.1
Dinv00152 Davidia involucrata HOM05D026811 ORTHO05D004559 6.6e-09 67.4 56 57.1
Dinv00151 Davidia involucrata HOM05D026811 ORTHO05D004559 9.5e-08 63.5 52 55.8
arahy.Tifrunner.gnm1.ann1.2V3ERI Arachis hypogaea HOM05D004001 ORTHO05D004559 2.1e-07 62.4 489 23.5
arahy.Tifrunner.gnm1.ann1.73J9IG Arachis hypogaea HOM05D004001 ORTHO05D004559 2.1e-07 62.4 129 40.3
Oeu005773.1 Olea europaea HOM05D004001 ORTHO05D004559 8.0e-07 60.5 107 43.0
arahy.Tifrunner.gnm1.ann1.GD98VG Arachis hypogaea HOM05D004001 ORTHO05D004559 1.4e-06 59.7 45 73.3
arahy.Tifrunner.gnm1.ann1.63QVJR Arachis hypogaea HOM05D004001 ORTHO05D004559 3.0e-06 58.5 489 23.3


User provided reference genes

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