Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g26424 Nelumbo nucifera HOM05D004964 ORTHO05D005918 3.6e-263 911.0 446 100.0
TAR362G0358 Trochodendron aralioides HOM05D004964 ORTHO05D005918 3.5e-157 558.9 437 64.3
MD04G1230400 Malus domestica HOM05D004964 ORTHO05D005918 2.1e-130 469.9 433 55.9
CSS0014360 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 9.9e-128 461.1 431 55.2
Aqoxy4G00649 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 2.2e-127 459.9 455 51.6
Aqoxy5G02134 Aquilegia oxysepala HOM05D004964 ORTHO05D005918 6.4e-127 458.4 455 51.6
MBI07_g16903_MAGBIO Magnolia biondii HOM05D004964 ORTHO05D005918 8.4e-127 458.0 451 53.9
Prupe.6G350300 Prunus persica HOM05D004964 ORTHO05D005918 7.1e-126 454.9 416 55.0
RcHm_v2.0_Chr3g0449661 Rosa chinensis HOM05D004964 ORTHO05D005918 1.6e-125 453.8 432 54.2
Manes.08G139500 Manihot esculenta HOM05D004964 ORTHO05D005918 2.1e-125 453.4 434 53.7
Cfa006356 Carpinus fangiana HOM05D004964 ORTHO05D005918 2.7e-125 453.0 440 54.8
GSVIVG01023502001 Vitis vinifera HOM05D004964 ORTHO05D005918 1.3e-124 450.7 433 54.7
FvH4_6g01921 Fragaria vesca HOM05D004964 ORTHO05D005918 1.7e-124 450.3 433 54.3
QL03p029942 Quercus lobata HOM05D004964 ORTHO05D005918 6.6e-124 448.4 431 54.8
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.3e-123 446.0 433 53.8
Lj2A43G39 Lonicera japonica HOM05D004964 ORTHO05D005918 7.3e-123 444.9 444 52.9
PSO210G1919 Papaver somniferum HOM05D004964 ORTHO05D005918 6.2e-122 441.8 435 54.3
Rhsim09G0136900 Rhododendron simsii HOM05D004964 ORTHO05D005918 4.0e-121 439.1 447 51.2
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 9.0e-121 438.0 432 53.9
VMungo0331G1958 Vigna mungo HOM05D004964 ORTHO05D005918 7.6e-120 434.9 448 51.3
QL03p029974 Quercus lobata HOM05D004964 ORTHO05D005918 1.3e-119 434.1 431 54.5
CiPaw.07G072600 Carya illinoinensis HOM05D004964 ORTHO05D005918 3.8e-119 432.6 445 52.4
PGSC0003DMG401006195 Solanum tuberosum HOM05D004964 ORTHO05D005918 3.9e-116 422.5 433 50.8
Thecc.05G270700 Theobroma cacao HOM05D004964 ORTHO05D005918 1.9e-115 420.2 443 52.1
Solyc01g111410.3 Solanum lycopersicum HOM05D004964 ORTHO05D005918 1.3e-114 417.5 430 51.2
CAN.G588.60 Capsicum annuum HOM05D004964 ORTHO05D005918 2.1e-114 416.8 430 50.0
Sopen01g053470 Solanum pennellii HOM05D004964 ORTHO05D005918 3.6e-114 416.0 430 50.7
Cc02_g08800 Coffea canephora HOM05D004964 ORTHO05D005918 1.8e-113 413.7 442 49.5
Cpa.g.sc162.40 Carica papaya HOM05D004964 ORTHO05D005918 2.4e-113 413.3 419 51.8
QL03p030425 Quercus lobata HOM05D004964 ORTHO05D005918 3.4e-112 409.5 415 53.7
Ciclev10020293m.g Citrus clementina HOM05D004964 ORTHO05D005918 8.4e-111 404.8 448 49.1
Sabra13G0043100 Salix brachista HOM05D004964 ORTHO05D005918 2.4e-110 403.3 362 58.0
Peaxi162Scf00407g00626 Petunia axillaris HOM05D004964 ORTHO05D005918 3.2e-110 402.9 418 51.7
Ca_14064_v3 Cicer arietinum L. HOM05D004964 ORTHO05D005918 7.1e-110 401.7 448 49.1
Phvul.010G051000 Phaseolus vulgaris HOM05D004964 ORTHO05D005918 9.3e-110 401.4 443 48.1
Sed0000191 Sechium edule HOM05D004964 ORTHO05D005918 2.3e-108 396.7 431 49.7
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.0e-108 396.4 455 49.2
FAN14G5822 Fragaria x ananassa HOM05D004964 ORTHO05D005918 3.9e-108 396.0 433 50.3
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 6.7e-108 395.2 455 49.2
Oeu016533.1 Olea europaea HOM05D004964 ORTHO05D005918 2.5e-107 393.3 436 51.4
Gorai.004G249200 Gossypium raimondii HOM05D004964 ORTHO05D005918 9.6e-107 391.3 430 50.2
Gohir.D08G234400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 1.3e-106 391.0 430 50.2
TPR.G33137 Trifolium pratense HOM05D004964 ORTHO05D005918 2.8e-106 389.8 447 48.1
BcaC06g34559 Brassica carinata HOM05D004964 ORTHO05D005918 6.9e-105 385.2 425 49.4
BolC7t43245H Brassica oleracea HOM05D004964 ORTHO05D005918 6.9e-105 385.2 425 49.4
HanXRQChr07g0204481 Helianthus annuus HOM05D004964 ORTHO05D005918 1.2e-104 384.4 432 48.6
C07p27180 Brassica napus HOM05D004964 ORTHO05D005918 4.5e-104 382.5 425 49.2
AL1G20790 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 7.6e-104 381.7 421 48.2
A06p47210 Brassica napus HOM05D004964 ORTHO05D005918 1.0e-103 381.3 421 49.2
PSO210G0659 Papaver somniferum HOM05D004964 ORTHO05D005918 1.0e-103 381.3 378 54.0
MELO3C008708.2 Cucumis melo HOM05D004964 ORTHO05D005918 2.2e-103 380.2 449 46.8
Duzib106G0302 Durio zibethinus HOM05D004964 ORTHO05D005918 2.2e-103 380.2 407 53.1
TPR.G17496 Trifolium pratense HOM05D004964 ORTHO05D005918 2.2e-103 380.2 450 47.6
BraA06t27592Z Brassica rapa HOM05D004964 ORTHO05D005918 2.9e-103 379.8 421 48.9
Lalb_Chr03g0040321 Lupinus albus HOM05D004964 ORTHO05D005918 4.9e-103 379.0 444 47.3
AT1G10095 Arabidopsis thaliana HOM05D004964 ORTHO05D005918 1.9e-102 377.1 405 49.1
Sc10g0001190 Simmondsia chinensis HOM05D004964 ORTHO05D005918 3.2e-102 376.3 406 48.5
CARHR010210 Cardamine hirsuta HOM05D004964 ORTHO05D005918 5.5e-102 375.6 419 49.2
Carub.0001s0952 Capsella rubella HOM05D004964 ORTHO05D005918 7.1e-102 375.2 422 48.3
Glyma.03G113500 Glycine max HOM05D004964 ORTHO05D005918 9.3e-102 374.8 447 46.3
A09p21080 Brassica napus HOM05D004964 ORTHO05D005918 1.2e-101 374.4 442 47.3
arahy.Tifrunner.gnm1.ann1.J3Q9FM Arachis hypogaea HOM05D004964 ORTHO05D005918 3.5e-101 372.9 435 45.1
arahy.Tifrunner.gnm1.ann1.H9CC2T Arachis hypogaea HOM05D004964 ORTHO05D005918 1.0e-100 371.3 435 45.3
Atru.chr2.987 Acer truncatum HOM05D004964 ORTHO05D005918 1.8e-100 370.5 444 46.8
BcaC06g31621 Brassica carinata HOM05D004964 ORTHO05D005918 5.1e-100 369.0 425 49.4
Thhalv10000880m.g Eutrema salsugineum HOM05D004964 ORTHO05D005918 5.1e-100 369.0 411 49.6
Glyma.07G113400 Glycine max HOM05D004964 ORTHO05D005918 3.3e-99 366.3 405 48.9
CSS0038343 Camellia sinensis var. sinensis HOM05D004964 ORTHO05D005918 9.6e-99 364.8 397 50.6
Medtr8g006785 Medicago truncatula HOM05D004964 ORTHO05D005918 3.7e-98 362.8 475 44.2
Dinv18988 Davidia involucrata HOM05D004964 ORTHO05D005918 4.0e-97 359.4 320 58.8
Lj3g0015193 Lotus japonicus HOM05D004964 ORTHO05D005918 5.3e-97 359.0 451 45.5
Psat4g225120 Pisum sativum HOM05D004964 ORTHO05D005918 5.3e-97 359.0 409 47.2
vmacro10367 Vaccinium macrocarpon HOM05D004964 ORTHO05D005918 5.3e-97 359.0 507 41.4
Migut.F00800 Erythranthe guttata HOM05D004964 ORTHO05D005918 6.9e-97 358.6 405 49.6
Lsat_1_v5_gn_8_24860 Lactuca sativa HOM05D004964 ORTHO05D005918 2.0e-96 357.1 430 46.5
Gohir.A08G217400 Gossypium hirsutum HOM05D004964 ORTHO05D005918 7.6e-96 355.1 430 47.4
EL10Ac2g04577 Beta vulgaris HOM05D004964 ORTHO05D005918 1.3e-95 354.4 462 42.9
DCAR_022832 Daucus carota HOM05D004964 ORTHO05D005918 1.3e-95 354.4 437 45.8
Nitab4.5_0013387g0040 Nicotiana tabacum HOM05D004964 ORTHO05D005918 3.8e-95 352.8 422 46.4
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 9.3e-94 348.2 407 49.1
CANSAT01G0497 Cannabis sativa HOM05D004964 ORTHO05D005918 2.7e-93 346.7 378 51.3
BraA09t37709Z Brassica rapa HOM05D004964 ORTHO05D005918 3.5e-93 346.3 442 45.2
unitig_46.g18500 Utricularia gibba HOM05D004964 ORTHO05D005918 4.6e-93 345.9 443 44.9
unitig_47.g30763 Utricularia gibba HOM05D004964 ORTHO05D005918 4.6e-93 345.9 443 44.9
MSTRG.14348 Avicennia marina HOM05D004964 ORTHO05D005918 1.3e-92 344.4 437 44.4
ATR0736G161 Amborella trichopoda HOM05D004964 ORTHO05D005918 1.8e-92 344.0 436 44.5
ECA233G3630 Erigeron canadensis HOM05D004964 ORTHO05D005918 3.0e-92 343.2 366 48.6
Sp2g09220 Schrenkiella parvula HOM05D004964 ORTHO05D005918 3.0e-92 343.2 369 49.9
HPP92_003061 Vanilla planifolia HOM05D004964 ORTHO05D005918 2.5e-91 340.1 441 45.1
AUR62023306 Chenopodium quinoa HOM05D004964 ORTHO05D005918 7.4e-91 338.6 437 43.2
Hund13719 Selenicereus undatus HOM05D004964 ORTHO05D005918 3.7e-90 336.3 446 44.2
Eucgr.H04227 Eucalyptus grandis HOM05D004964 ORTHO05D005918 5.9e-88 328.9 420 43.1
AL1G47560 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 5.0e-87 325.9 419 45.1
SGA_v2.0_scaffold26G11247 Striga asiatica HOM05D004964 ORTHO05D005918 1.9e-86 323.9 438 45.2
AUR62008995 Chenopodium quinoa HOM05D004964 ORTHO05D005918 5.5e-86 322.4 413 42.9
BcaB07g30949 Brassica carinata HOM05D004964 ORTHO05D005918 3.0e-84 316.6 440 42.3
Potri.013G047100 Populus trichocarpa HOM05D004964 ORTHO05D005918 5.1e-84 315.8 306 56.2
CsaV3_2G009770 Cucumis sativus L. HOM05D004964 ORTHO05D005918 5.7e-83 312.4 328 51.5
Nitab4.5_0005396g0030 Nicotiana tabacum HOM05D004964 ORTHO05D005918 4.8e-82 309.3 362 47.5
MD12G1248000 Malus domestica HOM05D004964 ORTHO05D005918 3.4e-80 303.1 304 53.0
COL.COLO4_00075 Corchorus olitorius HOM05D004964 ORTHO05D005918 3.3e-75 286.6 335 51.3
Hma1.2p1_1512F.1_g287895 Hydrangea macrophylla HOM05D004964 ORTHO05D005918 5.7e-75 285.8 258 57.8
SGA_v2.0_scaffold177G39428 Striga asiatica HOM05D004964 ORTHO05D005918 3.7e-74 283.1 439 41.9
SalBow6G5984 Salvia bowleyana HOM05D004964 ORTHO05D005918 1.2e-72 278.1 501 37.9
FAN09G0282 Fragaria x ananassa HOM05D004964 ORTHO05D005918 5.9e-72 275.8 266 56.0
Zm00001eb229480 Zea mays HOM05D004964 ORTHO05D005918 3.3e-67 260.0 314 46.8
Aa31LG1G4780 Aethionema arabicum HOM05D004964 ORTHO05D005918 2.4e-65 253.8 296 49.0
AL1G47570 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 2.0e-64 250.8 424 38.7
CARHR222860 Cardamine hirsuta HOM05D004964 ORTHO05D005918 4.2e-62 243.0 238 51.3
Pp3c7_7610 Physcomitrium patens HOM05D004964 ORTHO05D005918 1.2e-59 235.0 551 30.1
AagrBONN_evm.TU.Sc2ySwM_340.245 Anthoceros agrestis HOM05D004964 ORTHO05D005918 1.1e-57 228.4 450 33.1
Ah.10g037790 Amaranthus hybridus HOM05D004964 ORTHO05D005918 2.5e-54 217.2 438 32.6
AL1G20660 Arabidopsis lyrata HOM05D004964 ORTHO05D005918 2.7e-53 213.8 421 34.9
Pp3c11_21460 Physcomitrium patens HOM05D004964 ORTHO05D005918 2.7e-53 213.8 425 31.8
QL03p030145 Quercus lobata HOM05D004964 ORTHO05D005918 5.7e-51 206.1 193 50.3
QL03p030368 Quercus lobata HOM05D004964 ORTHO05D005918 1.8e-49 201.1 231 51.5
Os01g0684800 Oryza sativa ssp. japonica HOM05D004964 ORTHO05D005918 4.1e-49 199.9 233 45.5
Mapoly0082s0051 Marchantia polymorpha HOM05D004964 ORTHO05D005918 1.0e-47 195.3 521 27.6
QL03p030280 Quercus lobata HOM05D004964 ORTHO05D005918 9.5e-46 188.7 216 53.7
BcaC04g21837 Brassica carinata HOM05D004964 ORTHO05D005918 1.0e-44 185.3 299 40.5
C07p27190 Brassica napus HOM05D004964 ORTHO05D005918 1.5e-43 181.4 256 44.5
BolC7t43246H Brassica oleracea HOM05D004964 ORTHO05D005918 1.5e-43 181.4 256 44.5
ClCG11G010620 Citrullus lanatus HOM05D004964 ORTHO05D005918 1.4e-41 174.9 194 45.9
CDE04G2937 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 1.1e-38 165.2 194 47.4
C09p26820 Brassica napus HOM05D004964 ORTHO05D005918 9.5e-38 162.2 306 36.6
TPR.G15846 Trifolium pratense HOM05D004964 ORTHO05D005918 4.4e-35 153.3 187 47.6
CBR_g718 Chara braunii HOM05D004964 ORTHO05D005918 3.2e-33 147.1 427 28.8
SGA_v2.0_scaffold26G11248 Striga asiatica HOM05D004964 ORTHO05D005918 3.2e-33 147.1 218 41.3
QL03p030283 Quercus lobata HOM05D004964 ORTHO05D005918 1.0e-31 142.1 164 44.5
SHI23132 Sapria himalayana HOM05D000024 ORTHO05D000007 3.1e-28 130.6 112 53.6
Haze_04423 Corylus avellana HOM05D004964 ORTHO05D005918 5.2e-28 129.8 167 41.9
SMO146G0189 Selaginella moellendorffii HOM05D004964 ORTHO05D005918 6.8e-28 129.4 450 26.0
Hund12147 Selenicereus undatus HOM05D004964 ORTHO05D005918 1.2e-27 128.6 218 36.2
Haze_04422 Corylus avellana HOM05D004964 ORTHO05D005918 1.5e-27 128.3 194 43.8
MD12G1248600 Malus domestica HOM05D004964 ORTHO05D005918 2.6e-27 127.5 149 51.0
BolC9t55571H Brassica oleracea HOM05D004964 ORTHO05D005918 6.0e-24 116.3 197 37.6
QL03p030376 Quercus lobata HOM05D004964 ORTHO05D005918 8.6e-23 112.5 160 38.1
Aa31LG1G4790 Aethionema arabicum HOM05D004964 ORTHO05D005918 4.7e-21 106.7 127 39.4
CDE04G0768 Ceratophyllum demersum HOM05D004964 ORTHO05D005918 6.2e-21 106.3 167 35.3
SEGI_14565 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 5.2e-20 103.2 163 38.7
Lsat_1_v5_gn_6_73440 Lactuca sativa HOM05D001771 ORTHO05D001876 1.2e-19 102.1 139 43.9
TPR.G19618 Trifolium pratense HOM05D004964 ORTHO05D005918 9.9e-19 99.0 136 35.3
RcHm_v2.0_Chr2g0095691 Rosa chinensis HOM05D004964 ORTHO05D005918 3.5e-16 90.5 65 66.2
BolC9t55572H Brassica oleracea HOM05D004964 ORTHO05D005918 3.0e-15 87.4 109 45.0
SEGI_33500 Sequoiadendron giganteum HOM05D004964 ORTHO05D005918 2.6e-11 74.3 104 41.3
arahy.Tifrunner.gnm1.ann1.A28SEL Arachis hypogaea HOM05D000231 ORTHO05D005918 4.4e-11 73.6 97 43.3
Psat7g249360 Pisum sativum HOM05D001947 ORTHO05D021361 2.9e-10 70.9 176 33.0
Lsat_1_v5_gn_6_39820 Lactuca sativa HOM05D004964 ORTHO05D005918 2.1e-08 64.7 98 41.8
MD12G1248100 Malus domestica HOM05D004964 ORTHO05D005918 8.7e-07 59.3 83 41.0
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 9.6e-06 55.8 143 28.7


User provided reference genes

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