Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 1.2e-167 593.2 316 100.0
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 3.8e-89 332.4 231 84.0
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 1.0e-86 324.3 233 79.0
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 8.1e-84 314.7 235 79.6
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 1.9e-80 303.5 231 78.8
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 2.4e-80 303.1 233 70.8
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 2.3e-78 296.6 239 72.0
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 4.8e-76 288.9 233 73.8
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 4.8e-76 288.9 234 70.5
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 4.8e-76 288.9 189 86.8
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 1.1e-75 287.7 232 70.7
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 1.4e-75 287.3 234 70.5
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 1.8e-75 287.0 232 73.3
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 6.9e-75 285.0 234 72.6
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 9.0e-75 284.6 232 75.0
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 1.2e-74 284.3 231 74.0
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 1.5e-74 283.9 233 73.8
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 3.4e-74 282.7 235 71.5
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 3.4e-74 282.7 234 73.1
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 5.8e-74 282.0 231 73.6
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 7.6e-74 281.6 234 74.8
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 7.6e-74 281.6 238 67.6
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 1.3e-73 280.8 235 71.5
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 1.7e-73 280.4 235 71.1
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 2.2e-73 280.0 233 73.4
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 2.2e-73 280.0 231 74.0
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 1.1e-72 277.7 228 74.1
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 1.1e-72 277.7 235 72.3
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 1.1e-72 277.7 235 72.3
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 1.4e-72 277.3 238 72.7
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 3.2e-72 276.2 231 72.3
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 7.1e-72 275.0 232 73.3
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 9.3e-72 274.6 236 70.8
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.2e-71 274.2 232 71.1
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 1.2e-71 274.2 231 71.9
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 4.6e-71 272.3 228 73.2
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 6.0e-71 271.9 232 72.0
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 6.0e-71 271.9 228 72.8
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 1.3e-70 270.8 254 68.1
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 1.8e-70 270.4 231 74.0
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 1.8e-70 270.4 238 66.0
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 1.8e-70 270.4 239 70.3
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 5.1e-70 268.9 189 80.4
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 8.7e-70 268.1 225 71.1
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 8.7e-70 268.1 238 65.1
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 1.1e-69 267.7 238 65.5
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.5e-69 266.5 232 69.4
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 3.3e-69 266.2 238 66.0
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 4.3e-69 265.8 244 66.0
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 4.3e-69 265.8 178 86.0
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 9.6e-69 264.6 191 79.1
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 1.6e-68 263.8 227 64.8
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 2.1e-68 263.5 236 65.7
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 2.8e-68 263.1 238 67.6
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 2.8e-68 263.1 228 71.1
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 8.1e-68 261.5 183 82.0
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 1.1e-67 261.2 268 63.8
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 1.4e-67 260.8 235 68.9
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 1.4e-67 260.8 231 69.3
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 1.8e-67 260.4 226 70.8
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 3.1e-67 259.6 235 65.5
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 3.1e-67 259.6 235 68.9
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 6.9e-67 258.5 180 80.0
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 1.2e-66 257.7 227 70.5
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 7.6e-66 255.0 236 67.8
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 7.6e-66 255.0 238 68.5
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 7.6e-66 255.0 237 66.7
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 7.6e-66 255.0 237 66.7
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 1.3e-65 254.2 227 67.8
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 1.7e-65 253.8 183 76.0
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 2.2e-65 253.4 183 81.4
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 2.9e-65 253.1 238 66.4
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 3.8e-65 252.7 253 61.3
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 8.4e-65 251.5 238 63.4
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 1.4e-64 250.8 238 66.0
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 1.4e-64 250.8 269 57.6
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 1.9e-64 250.4 245 67.3
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 1.9e-64 250.4 238 66.0
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 2.5e-64 250.0 238 62.6
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 2.5e-64 250.0 243 66.3
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 2.5e-64 250.0 215 67.9
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 3.2e-64 249.6 233 69.5
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 4.2e-64 249.2 222 69.4
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 4.2e-64 249.2 180 77.2
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 7.1e-64 248.4 234 64.5
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 1.6e-63 247.3 238 64.7
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 2.7e-63 246.5 240 65.0
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 2.7e-63 246.5 239 64.9
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 6.0e-63 245.4 247 65.2
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 1.0e-62 244.6 180 73.3
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 2.3e-62 243.4 179 81.0
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.1e-61 241.1 228 65.8
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 1.1e-61 241.1 228 65.8
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 5.7e-61 238.8 245 60.0
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 1.3e-60 237.7 234 64.5
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 1.4e-59 234.2 195 65.1
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 1.2e-58 231.1 182 69.2
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 1.5e-58 230.7 248 59.3
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 2.0e-58 230.3 202 66.3
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 3.2e-56 223.0 151 84.8
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 2.3e-54 216.9 305 50.8
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 6.7e-54 215.3 242 56.2
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 3.3e-53 213.0 224 60.3
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 2.4e-51 206.8 131 81.7
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 4.5e-50 202.6 187 63.6
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 1.9e-48 197.2 192 57.8
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.1e-47 193.7 232 56.9
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 7.4e-45 185.3 196 54.1
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.1e-43 181.4 129 83.7
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 7.2e-40 168.7 184 56.0
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 1.6e-39 167.5 146 62.3
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 4.7e-39 166.0 258 49.2
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 4.4e-37 159.5 169 55.0
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 4.1e-35 152.9 99 78.8
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 4.1e-35 152.9 100 78.0
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.5e-34 151.0 100 77.0
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 2.6e-34 150.2 217 47.0
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 6.5e-33 145.6 94 76.6
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 1.5e-29 134.4 152 55.3
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 7.0e-27 125.6 215 42.3
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.6e-26 123.6 73 82.2
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 2.6e-26 123.6 260 38.1
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 1.0e-25 121.7 123 52.0
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 2.5e-24 117.1 100 58.0
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 9.4e-24 115.2 260 36.2
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 9.4e-24 115.2 210 40.0
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 1.6e-23 114.4 210 39.5
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 2.7e-23 113.6 136 47.8
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 3.6e-23 113.2 95 77.9
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 4.7e-23 112.8 79 68.4
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 6.3e-20 102.4 150 45.3
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 9.1e-19 98.6 185 38.9
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 5.9e-18 95.9 82 65.9
Actinidia02087 Actinidia chinensis HOM05D005346 ORTHO05D007051 4.2e-16 89.7 94 58.5
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 1.8e-14 84.3 138 37.0
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 9.1e-11 72.0 115 42.6
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 1.2e-10 71.6 133 37.6
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 1.6e-10 71.2 106 49.1
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 1.3e-09 68.2 127 38.6
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 1.7e-09 67.8 51 68.6
TAR636G0451 Trochodendron aralioides HOM05D005346 ORTHO05D007051 6.6e-09 65.9 92 46.7


User provided reference genes

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