Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 6.7e-128 460.7 233 100.0
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 5.6e-98 361.3 233 77.3
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 3.4e-95 352.1 234 75.2
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 4.4e-95 351.7 222 77.0
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 3.9e-91 338.6 233 71.7
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 5.6e-90 334.7 234 73.1
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 1.2e-89 333.6 233 74.2
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 1.2e-89 333.6 232 73.7
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 8.1e-89 330.9 235 71.5
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 3.1e-88 328.9 233 71.2
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 8.9e-88 327.4 232 69.8
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 5.8e-87 324.7 235 68.9
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 5.8e-87 324.7 235 68.9
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 7.5e-87 324.3 231 73.2
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 1.7e-86 323.2 235 68.5
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 1.7e-86 323.2 233 70.8
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 2.2e-86 322.8 243 67.9
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 8.3e-86 320.9 233 67.8
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 2.4e-85 319.3 227 71.8
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 4.1e-85 318.5 234 68.4
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 5.4e-85 318.2 230 70.4
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 7.1e-85 317.8 234 67.5
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 9.2e-85 317.4 236 68.2
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 2.7e-84 315.8 233 69.5
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 4.6e-84 315.1 230 67.8
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 4.6e-84 315.1 231 69.3
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 7.8e-84 314.3 245 63.3
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 7.8e-84 314.3 233 69.1
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 1.3e-83 313.5 232 67.7
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 1.3e-83 313.5 229 66.8
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 5.1e-83 311.6 235 69.4
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 1.5e-82 310.1 229 66.4
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 4.3e-82 308.5 236 68.2
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 5.6e-82 308.1 230 67.0
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 1.2e-81 307.0 233 67.4
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 1.6e-81 306.6 233 66.1
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 1.6e-81 306.6 234 66.7
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 6.2e-81 304.7 230 66.5
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 6.2e-81 304.7 230 66.5
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 3.1e-80 302.4 232 69.0
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 6.8e-80 301.2 234 65.4
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 8.9e-80 300.8 229 65.1
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 2.0e-79 299.7 229 64.2
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 4.4e-79 298.5 232 67.2
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 3.8e-78 295.4 236 64.8
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 3.8e-78 295.4 234 67.5
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 4.9e-78 295.0 234 63.7
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 6.4e-78 294.7 234 63.7
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 8.4e-78 294.3 232 67.7
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 4.1e-77 292.0 234 66.7
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 5.4e-77 291.6 232 62.5
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 7.1e-77 291.2 232 62.5
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 2.1e-76 289.7 226 64.6
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 4.6e-76 288.5 227 67.0
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 4.6e-76 288.5 235 64.3
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 4.6e-76 288.5 235 64.3
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 7.8e-76 287.7 216 69.0
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 1.0e-75 287.3 212 68.9
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 2.3e-75 286.2 230 65.2
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 8.6e-75 284.3 234 65.4
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 8.6e-75 284.3 235 63.4
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 1.5e-74 283.5 231 68.0
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 3.3e-74 282.3 226 65.0
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 5.6e-74 281.6 236 63.1
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 9.6e-74 280.8 233 60.5
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 1.6e-73 280.0 237 61.2
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 3.6e-73 278.9 236 61.4
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 4.7e-73 278.5 226 65.0
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 4.7e-73 278.5 229 64.6
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 1.8e-72 276.6 237 62.9
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 1.8e-72 276.6 224 62.1
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 2.4e-72 276.2 235 61.3
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 2.4e-72 276.2 238 59.7
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 5.2e-72 275.0 235 60.9
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 6.9e-72 274.6 233 62.2
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 8.9e-72 274.2 247 57.9
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 1.2e-71 273.9 226 59.7
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 1.5e-71 273.5 219 61.2
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 7.6e-71 271.2 232 58.6
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 7.6e-71 271.2 238 59.7
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 2.9e-70 269.2 232 58.6
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 2.9e-70 269.2 233 61.4
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 6.4e-70 268.1 235 60.9
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 8.4e-70 267.7 232 58.6
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 1.1e-69 267.3 226 61.5
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 1.4e-69 266.9 227 61.7
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 2.4e-69 266.2 228 61.0
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 9.3e-69 264.2 229 62.4
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 2.7e-68 262.7 234 59.4
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 4.6e-68 261.9 233 59.7
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 1.0e-67 260.8 234 57.7
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 1.3e-67 260.4 226 59.3
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 4.3e-66 255.4 231 60.6
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 7.3e-66 254.6 278 50.7
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 9.6e-66 254.2 287 50.5
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 1.2e-63 247.3 213 61.5
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 1.7e-62 243.4 243 55.6
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 4.9e-62 241.9 235 56.6
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 1.4e-61 240.4 177 68.4
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 5.4e-61 238.4 215 60.5
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 1.0e-59 234.2 232 55.6
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 5.1e-59 231.9 231 53.7
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 1.9e-58 229.9 216 58.8
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 1.9e-58 229.9 236 52.1
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 2.6e-55 219.5 270 47.8
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 1.4e-53 213.8 222 50.9
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 6.7e-51 204.9 238 49.6
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 2.5e-50 203.0 167 64.7
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 3.3e-50 202.6 157 66.9
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 1.8e-43 180.3 183 50.8
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 2.3e-43 179.9 135 64.4
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 3.9e-43 179.1 228 45.6
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 8.7e-43 177.9 240 42.1
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 2.5e-42 176.4 234 44.9
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 2.8e-41 172.9 230 42.6
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 1.8e-40 170.2 141 62.4
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 1.5e-39 167.2 236 40.7
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 1.0e-38 164.5 95 78.9
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 2.3e-35 153.3 122 61.5
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 3.0e-35 152.9 239 40.2
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 1.1e-32 144.4 218 43.1
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 8.5e-30 134.8 92 66.3
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 8.5e-30 134.8 126 60.3
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 2.5e-29 133.3 142 51.4
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 1.1e-26 124.4 158 49.4
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 5.7e-26 122.1 98 62.2
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 5.3e-24 115.5 101 58.4
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 6.5e-22 108.6 153 43.1
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 3.6e-20 102.8 215 33.0
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 6.1e-20 102.1 109 47.7
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 1.8e-19 100.5 136 48.5
Ciclev10006356m.g Citrus clementina HOM05D005662 ORTHO05D007004 1.1e-16 91.3 80 52.5
DCAR_021652 Daucus carota HOM05D000949 ORTHO05D001276 1.2e-15 87.8 76 61.8
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 3.5e-15 86.3 136 43.4
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 1.0e-14 84.7 53 73.6
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 1.7e-14 84.0 188 31.9
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 2.9e-14 83.2 76 60.5
arahy.Tifrunner.gnm1.ann1.8PDC51 Arachis hypogaea HOM05D005662 ORTHO05D007004 7.2e-13 78.6 94 46.8
FvH4_3g21360 Fragaria vesca HOM05D005731 ORTHO05D012104 1.6e-12 77.4 84 52.4
DCAR_026119 Daucus carota HOM05D000323 ORTHO05D000201 1.0e-06 58.2 101 35.6


User provided reference genes

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