Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 8.7e-229 796.6 391 100.0
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 2.7e-177 625.5 391 78.0
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 5.5e-175 617.8 391 74.7
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 8.0e-174 614.0 391 73.9
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 2.3e-173 612.5 391 75.7
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 6.8e-173 610.9 391 75.2
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 4.4e-172 608.2 391 74.4
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 1.2e-169 600.1 391 75.2
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 2.7e-169 599.0 391 76.0
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 3.5e-169 598.6 387 74.2
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 1.3e-168 596.7 392 74.7
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 2.3e-168 595.9 391 74.4
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 2.1e-166 589.3 391 74.2
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 1.7e-163 579.7 387 73.9
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 1.7e-163 579.7 387 73.4
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 1.1e-162 577.0 386 73.3
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 1.8e-162 576.2 391 71.6
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 1.3e-160 570.1 391 72.6
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 1.7e-160 569.7 409 70.2
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 4.3e-159 565.1 392 71.4
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 9.5e-159 563.9 409 69.2
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 2.1e-158 562.8 391 70.6
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 2.8e-158 562.4 409 70.2
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 4.0e-157 558.5 369 74.0
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 8.9e-157 557.4 391 71.6
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 1.3e-155 553.5 384 70.8
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 1.7e-155 553.1 391 71.1
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 3.7e-155 552.0 409 68.0
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 3.7e-155 552.0 390 70.0
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 4.9e-155 551.6 390 70.0
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 8.3e-155 550.8 391 69.8
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 4.1e-154 548.5 393 69.2
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 4.1e-154 548.5 390 69.0
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 7.0e-154 547.7 393 69.0
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 1.2e-153 547.0 393 70.0
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 1.6e-153 546.6 375 72.3
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 6.0e-153 544.7 393 68.4
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 6.0e-153 544.7 386 69.2
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.0e-152 543.9 393 68.4
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 2.3e-152 542.7 386 67.9
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 3.0e-152 542.3 394 69.5
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 3.9e-152 542.0 387 69.3
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 6.6e-152 541.2 399 68.2
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 6.6e-152 541.2 376 69.4
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 1.9e-151 539.7 386 67.6
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 1.9e-151 539.7 391 68.5
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 2.5e-151 539.3 391 69.3
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 9.5e-151 537.3 391 69.8
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 4.7e-150 535.0 415 64.6
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 2.3e-149 532.7 365 72.6
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 4.0e-149 531.9 391 67.0
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 4.0e-149 531.9 394 68.3
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 3.4e-148 528.9 391 68.0
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 5.8e-148 528.1 391 66.8
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 7.5e-148 527.7 391 67.0
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 7.5e-148 527.7 391 68.8
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 2.2e-147 526.2 376 70.5
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 6.4e-147 524.6 392 66.6
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 1.9e-146 523.1 391 67.8
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 3.2e-146 522.3 383 68.4
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 9.2e-146 520.8 392 65.3
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 2.1e-145 519.6 392 68.6
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 3.5e-145 518.8 401 65.8
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 3.5e-145 518.8 396 66.9
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 1.3e-144 516.9 399 66.9
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 1.3e-144 516.9 416 63.0
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 2.3e-144 516.2 393 67.9
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 4.3e-143 511.9 391 66.8
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 1.6e-142 510.0 393 65.4
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 2.1e-142 509.6 390 66.7
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 3.6e-142 508.8 349 73.9
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 8.1e-142 507.7 424 62.7
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 8.1e-142 507.7 391 66.2
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 1.8e-141 506.5 393 64.6
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 1.8e-141 506.5 369 67.2
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 1.2e-140 503.8 393 65.1
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 7.6e-140 501.1 392 63.0
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 1.7e-139 500.0 392 64.3
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 1.9e-138 496.5 379 64.6
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 4.6e-137 491.9 392 63.3
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 2.3e-136 489.6 392 62.8
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 1.9e-135 486.5 392 62.2
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 1.9e-135 486.5 394 62.4
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 1.2e-134 483.8 392 63.0
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 6.2e-134 481.5 392 62.2
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 6.2e-134 481.5 392 62.2
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 4.0e-133 478.8 366 65.0
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 4.0e-133 478.8 366 67.5
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 5.8e-132 474.9 386 61.7
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 1.1e-130 470.7 390 61.5
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 5.4e-130 468.4 343 67.6
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 2.1e-129 466.5 418 58.6
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 9.6e-127 457.6 349 66.2
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 3.6e-126 455.7 336 67.9
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 6.2e-126 454.9 321 70.4
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 1.1e-119 434.1 379 59.1
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 2.2e-115 419.9 342 60.2
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 9.0e-109 397.9 265 72.8
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 8.4e-107 391.3 305 64.3
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 2.3e-104 383.3 253 73.5
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 2.4e-101 373.2 265 70.2
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 4.8e-94 349.0 386 49.5
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 1.9e-90 337.0 325 55.4
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 7.2e-90 335.1 262 63.7
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 2.8e-86 323.2 203 74.9
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 4.5e-84 315.8 188 77.1
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 6.3e-78 295.4 217 70.5
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 1.2e-76 291.2 165 83.6
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 2.2e-75 287.0 226 65.0
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 7.5e-71 271.9 271 48.3
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 3.6e-65 253.1 188 62.8
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 6.8e-64 248.8 177 66.7
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 4.7e-57 226.1 132 78.8
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 5.6e-50 202.6 216 46.3
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 6.8e-48 195.7 115 77.4
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 4.4e-47 193.0 212 45.8
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 2.0e-44 184.1 135 68.9
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 7.8e-44 182.2 188 52.7
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 5.2e-40 169.5 133 60.9
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 6.8e-40 169.1 133 60.9
Gohir.A08G135200 Gossypium hirsutum HOM05D005612 ORTHO05D007014 9.8e-39 165.2 168 54.8
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 2.4e-37 160.6 185 51.4
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 3.5e-36 156.8 133 59.4
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 3.3e-34 150.2 235 38.7
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 1.4e-32 144.8 200 41.0
MBI14_g08143_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 2.0e-31 141.0 113 67.3
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 4.9e-30 136.3 84 75.0
Gohir.A08G135550 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.4e-29 134.8 146 53.4
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 6.2e-25 119.4 63 85.7
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 8.9e-24 115.5 109 54.1
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 1.2e-23 115.2 75 69.3
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 1.7e-22 111.3 72 73.6
Os06g0571300 Oryza sativa ssp. japonica HOM05D005612 ORTHO05D007014 1.5e-18 98.2 93 61.3
MD15G1255900 Malus domestica HOM05D001392 ORTHO05D036605 7.1e-13 79.3 47 80.9
Medtr8g102042 Medicago truncatula HOM05D005612 ORTHO05D007014 1.6e-12 78.2 60 65.0
Dinv39084 Davidia involucrata HOM05D005612 ORTHO05D007014 3.9e-11 73.6 105 38.1
Lalb_Chr08g0243441 Lupinus albus HOM05D005612 ORTHO05D007014 1.3e-09 68.6 47 70.2


User provided reference genes

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