Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g26265 Nelumbo nucifera HOM05D006303 ORTHO05D008007 4.4e-171 604.7 353 100.0
Nn1g02244 Nelumbo nucifera HOM05D006303 ORTHO05D008007 2.0e-115 419.9 333 80.5
Nn2g13850 Nelumbo nucifera HOM05D006303 ORTHO05D008007 1.2e-112 410.6 304 85.2
TAR365G0083 Trochodendron aralioides HOM05D006303 ORTHO05D008007 7.9e-96 354.8 321 72.3
CiPaw.01G163800 Carya illinoinensis HOM05D006303 ORTHO05D008007 1.9e-94 350.1 331 67.4
Manes.15G026800 Manihot esculenta HOM05D006303 ORTHO05D008007 1.9e-89 333.6 338 66.0
Manes.03G181100 Manihot esculenta HOM05D006303 ORTHO05D008007 1.5e-86 323.9 337 65.3
CiPaw.02G095400 Carya illinoinensis HOM05D006303 ORTHO05D008007 2.2e-85 320.1 336 62.2
Cc03_g03480 Coffea canephora HOM05D006303 ORTHO05D008007 5.3e-84 315.5 352 65.3
Cfa015618 Carpinus fangiana HOM05D006303 ORTHO05D008007 1.5e-83 313.9 321 64.2
Haze_00877 Corylus avellana HOM05D006303 ORTHO05D008007 2.0e-83 313.5 323 64.7
Duzib052G1015 Durio zibethinus HOM05D006303 ORTHO05D008007 4.5e-83 312.4 348 58.0
TWI09G0488 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 2.9e-82 309.7 334 65.6
Aqoxy5G00502 Aquilegia oxysepala HOM05D006303 ORTHO05D008007 1.0e-79 301.2 331 62.2
TWI53G0528 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 2.3e-79 300.1 300 70.3
COL.COLO4_06194 Corchorus olitorius HOM05D006303 ORTHO05D008007 3.9e-79 299.3 340 57.9
VMungo1215G3149 Vigna mungo HOM05D006303 ORTHO05D008007 5.7e-78 295.4 341 59.8
Gohir.A09G214600 Gossypium hirsutum HOM05D006303 ORTHO05D008007 1.3e-77 294.3 333 65.2
Gorai.006G237600 Gossypium raimondii HOM05D006303 ORTHO05D008007 1.3e-77 294.3 333 64.9
Thecc.04G227500 Theobroma cacao HOM05D006303 ORTHO05D008007 1.1e-76 291.2 355 58.0
Lj1g0001361 Lotus japonicus HOM05D006303 ORTHO05D008007 5.3e-76 288.9 352 59.7
Potri.010G090500 Populus trichocarpa HOM05D006303 ORTHO05D008007 6.9e-76 288.5 358 59.8
Sabra10G0052900 Salix brachista HOM05D006303 ORTHO05D008007 1.2e-75 287.7 354 56.8
Dinv38426 Davidia involucrata HOM05D006303 ORTHO05D008007 7.7e-75 285.0 329 65.3
Gohir.D09G217100 Gossypium hirsutum HOM05D006303 ORTHO05D008007 1.0e-74 284.6 332 63.9
Medtr5g005960 Medicago truncatula HOM05D006303 ORTHO05D008007 8.5e-74 281.6 342 58.2
Nitab4.5_0000260g0090 Nicotiana tabacum HOM05D006303 ORTHO05D008007 1.4e-73 280.8 346 62.4
QL06p003344 Quercus lobata HOM05D006303 ORTHO05D008007 4.2e-73 279.3 339 59.6
Cpa.g.sc147.34 Carica papaya HOM05D006303 ORTHO05D008007 2.7e-72 276.6 337 59.9
ClCG06G006020 Citrullus lanatus HOM05D006303 ORTHO05D008007 2.7e-72 276.6 346 54.9
Duzib212G0816 Durio zibethinus HOM05D006303 ORTHO05D008007 3.6e-72 276.2 351 59.5
Nitab4.5_0007531g0010 Nicotiana tabacum HOM05D006303 ORTHO05D008007 3.6e-72 276.2 348 60.9
MELO3C014489.2 Cucumis melo HOM05D006303 ORTHO05D008007 6.7e-71 271.9 348 53.7
Phvul.002G047200 Phaseolus vulgaris HOM05D006303 ORTHO05D008007 7.4e-70 268.5 343 55.1
PGSC0003DMG400031852 Solanum tuberosum HOM05D006303 ORTHO05D008007 1.3e-69 267.7 353 56.7
Glyma.11G004400 Glycine max HOM05D006303 ORTHO05D008007 2.2e-69 266.9 366 53.6
Solyc09g075750.1 Solanum lycopersicum HOM05D006303 ORTHO05D008007 2.2e-69 266.9 351 56.7
FvH4_4g15080 Fragaria vesca HOM05D006303 ORTHO05D008007 2.8e-69 266.5 354 55.6
FAN07G1279 Fragaria x ananassa HOM05D006303 ORTHO05D008007 2.8e-69 266.5 357 52.4
FAN22G0434 Fragaria x ananassa HOM05D006303 ORTHO05D008007 3.7e-69 266.2 358 54.7
FAN12G1910 Fragaria x ananassa HOM05D006303 ORTHO05D008007 8.2e-69 265.0 354 55.4
Peaxi162Scf00437g00041 Petunia axillaris HOM05D006303 ORTHO05D008007 1.4e-68 264.2 346 56.6
Sopen09g030560 Solanum pennellii HOM05D006303 ORTHO05D008007 1.8e-68 263.8 355 55.8
FAN17G3084 Fragaria x ananassa HOM05D006303 ORTHO05D008007 3.1e-68 263.1 353 56.1
Psat4g211440 Pisum sativum HOM05D006303 ORTHO05D008007 3.1e-68 263.1 345 54.8
Atru.chr4.2516 Acer truncatum HOM05D006303 ORTHO05D008007 4.1e-68 262.7 338 59.2
Hma1.2p1_0517F.1_g171030 Hydrangea macrophylla HOM05D006303 ORTHO05D008007 7.0e-68 261.9 332 56.9
Lsat_1_v5_gn_5_148441 Lactuca sativa HOM05D006303 ORTHO05D008007 2.0e-67 260.4 342 54.1
TPR.G37902 Trifolium pratense HOM05D006303 ORTHO05D008007 5.9e-67 258.8 351 54.7
Nn3g18018 Nelumbo nucifera HOM05D006303 ORTHO05D008007 7.7e-67 258.5 149 94.6
Sed0009344 Sechium edule HOM05D006303 ORTHO05D008007 7.7e-67 258.5 335 51.0
Ca_24387_v3 Cicer arietinum L. HOM05D006303 ORTHO05D008007 2.9e-66 256.5 321 58.6
HanXRQChr15g0466041 Helianthus annuus HOM05D006303 ORTHO05D008007 3.8e-66 256.1 330 58.5
CsaV3_6G038260 Cucumis sativus L. HOM05D006303 ORTHO05D008007 8.5e-66 255.0 349 52.1
Oeu034363.1 Olea europaea HOM05D006303 ORTHO05D008007 8.5e-66 255.0 334 60.5
Ciclev10005353m.g Citrus clementina HOM05D006303 ORTHO05D008007 3.2e-65 253.1 340 60.0
arahy.Tifrunner.gnm1.ann1.RSQ2PF Arachis hypogaea HOM05D006303 ORTHO05D008007 2.7e-64 250.0 320 60.9
Oeu004490.1 Olea europaea HOM05D006303 ORTHO05D008007 6.1e-64 248.8 340 56.5
ECA234G3153 Erigeron canadensis HOM05D006303 ORTHO05D008007 1.5e-62 244.2 343 54.2
Dinv44508 Davidia involucrata HOM05D006303 ORTHO05D008007 4.4e-62 242.7 357 53.5
PGR004G2192 Punica granatum HOM05D006303 ORTHO05D008007 3.7e-61 239.6 376 52.9
MSTRG.4016 Avicennia marina HOM05D006303 ORTHO05D008007 3.5e-59 233.0 346 53.8
CANSAT78G1152 Cannabis sativa HOM05D006303 ORTHO05D008007 3.8e-58 229.6 396 48.7
DCAR_027185 Daucus carota HOM05D006303 ORTHO05D008007 9.4e-57 224.9 339 55.5
Ah.04g154500 Amaranthus hybridus HOM05D006303 ORTHO05D008007 1.6e-56 224.2 344 53.2
BolC9t53571H Brassica oleracea HOM05D006303 ORTHO05D008007 1.0e-55 221.5 330 57.0
Aqoxy2G03353 Aquilegia oxysepala HOM05D006303 ORTHO05D008007 1.4e-55 221.1 286 60.8
MSTRG.24747 Avicennia marina HOM05D006303 ORTHO05D008007 5.2e-55 219.2 332 50.0
BcaC04g23610 Brassica carinata HOM05D006303 ORTHO05D008007 2.0e-54 217.2 313 58.1
MD16G1188900 Malus domestica HOM05D006303 ORTHO05D008007 2.6e-54 216.9 326 55.5
THA.LOC104802760 Tarenaya hassleriana HOM05D006303 ORTHO05D008007 8.3e-53 211.8 313 56.2
C09p06490 Brassica napus HOM05D006303 ORTHO05D008007 1.1e-52 211.5 304 57.6
SalBow5G2627 Salvia bowleyana HOM05D006303 ORTHO05D008007 3.1e-52 209.9 340 55.9
BcaB04g19742 Brassica carinata HOM05D006303 ORTHO05D008007 4.1e-52 209.5 332 51.5
SalBow5G4234 Salvia bowleyana HOM05D006303 ORTHO05D008007 9.1e-52 208.4 344 55.2
BcaNung03972 Brassica carinata HOM05D006303 ORTHO05D008007 3.5e-51 206.5 303 58.7
A09p05910 Brassica napus HOM05D006303 ORTHO05D008007 4.5e-51 206.1 305 59.0
MD13G1188500 Malus domestica HOM05D006303 ORTHO05D008007 1.3e-50 204.5 335 49.6
Lsat_1_v5_gn_7_65920 Lactuca sativa HOM05D006303 ORTHO05D008007 2.1e-48 197.2 331 47.4
BraA09t36233Z Brassica rapa HOM05D006303 ORTHO05D008007 6.1e-48 195.7 304 56.6
C07p41810 Brassica napus HOM05D006303 ORTHO05D008007 3.0e-47 193.4 304 53.3
A06p36730 Brassica napus HOM05D006303 ORTHO05D008007 4.0e-47 193.0 302 54.3
BraA06t26595Z Brassica rapa HOM05D006303 ORTHO05D008007 4.0e-47 193.0 302 54.3
BcaNung02811 Brassica carinata HOM05D006303 ORTHO05D008007 5.2e-47 192.6 304 53.0
BolC7t44712H Brassica oleracea HOM05D006303 ORTHO05D008007 5.2e-47 192.6 304 53.0
PSO384G0046 Papaver somniferum HOM05D006303 ORTHO05D008007 4.4e-46 189.5 374 43.9
Prupe.1G155600 Prunus persica HOM05D006303 ORTHO05D008007 1.7e-45 187.6 334 49.1
MBI17_g34761_MAGBIO Magnolia biondii HOM05D006303 ORTHO05D008007 4.1e-44 183.0 321 49.2
Thhalv10004558m.g Eutrema salsugineum HOM05D006303 ORTHO05D008007 1.7e-42 177.6 328 51.8
AL6G38240 Arabidopsis lyrata HOM05D006303 ORTHO05D008007 1.9e-41 174.1 330 50.6
Sp2g21520 Schrenkiella parvula HOM05D006303 ORTHO05D008007 1.9e-41 174.1 302 53.6
CARHR187140 Cardamine hirsuta HOM05D006303 ORTHO05D008007 9.5e-41 171.8 341 50.7
Sc13g0004270 Simmondsia chinensis HOM05D006303 ORTHO05D008007 4.7e-40 169.5 338 41.7
arahy.Tifrunner.gnm1.ann1.S8XWMG Arachis hypogaea HOM05D006303 ORTHO05D008007 2.3e-39 167.2 342 45.3
Carub.0006s2405 Capsella rubella HOM05D006303 ORTHO05D008007 6.8e-39 165.6 345 49.0
arahy.Tifrunner.gnm1.ann1.KMTU0V Arachis hypogaea HOM05D006303 ORTHO05D008007 2.0e-38 164.1 332 45.8
ClCG05G005270 Citrullus lanatus HOM05D006303 ORTHO05D008007 3.4e-38 163.3 355 45.9
CsaV3_3G013490 Cucumis sativus L. HOM05D006303 ORTHO05D008007 1.7e-37 161.0 328 48.5
PSO135G0705 Papaver somniferum HOM05D006303 ORTHO05D008007 1.7e-37 161.0 363 39.1
MELO3C006546.2 Cucumis melo HOM05D006303 ORTHO05D008007 3.7e-37 159.8 317 48.3
PSO717G0040 Papaver somniferum HOM05D006303 ORTHO05D008007 1.1e-36 158.3 360 48.9
PSO675G0548 Papaver somniferum HOM05D006303 ORTHO05D008007 1.8e-36 157.5 367 46.6
AT5G26230 Arabidopsis thaliana HOM05D006303 ORTHO05D008007 2.4e-36 157.1 334 46.4
HPP92_003595 Vanilla planifolia HOM05D006303 ORTHO05D008007 9.2e-36 155.2 333 49.5
EL10As3g23363 Beta vulgaris HOM05D006303 ORTHO05D008007 4.6e-35 152.9 369 46.3
Zm00001eb350820 Zea mays HOM05D006303 ORTHO05D008007 2.3e-34 150.6 321 47.4
SalBow2G0078 Salvia bowleyana HOM05D006303 ORTHO05D008007 8.6e-34 148.7 321 48.9
Sed0019333 Sechium edule HOM05D006303 ORTHO05D008007 8.6e-34 148.7 328 46.0
Aa31LG11G10320 Aethionema arabicum HOM05D006303 ORTHO05D008007 2.8e-32 143.7 234 57.7
Migut.G00317 Erythranthe guttata HOM05D006303 ORTHO05D008007 3.4e-30 136.7 241 46.1
Nn3g18017 Nelumbo nucifera HOM05D006303 ORTHO05D008007 6.4e-29 132.5 101 84.2
GSVIVG01017928001 Vitis vinifera HOM05D006303 ORTHO05D008007 9.2e-28 128.6 326 35.9
Nn2g12462 Nelumbo nucifera HOM05D006303 ORTHO05D008007 4.3e-25 119.8 87 85.1
AUR62038095 Chenopodium quinoa HOM05D006303 ORTHO05D008007 4.0e-23 113.2 167 49.1
Os05g0390600 Oryza sativa ssp. japonica HOM05D006303 ORTHO05D008007 4.0e-23 113.2 371 39.4
Actinidia40170 Actinidia chinensis HOM05D006303 ORTHO05D008007 2.0e-22 110.9 168 48.2
SGA_v2.0_scaffold10G05105 Striga asiatica HOM05D006303 ORTHO05D008007 3.4e-22 110.2 212 44.8
Rhsim04G0205200 Rhododendron simsii HOM05D006303 ORTHO05D008007 4.9e-21 106.3 161 47.8
SGA_v2.0_scaffold257G45734 Striga asiatica HOM05D006303 ORTHO05D008007 1.4e-20 104.8 225 40.0
Lj6C598T9 Lonicera japonica HOM05D006303 ORTHO05D008007 1.1e-17 95.1 96 60.4
AUR62038636 Chenopodium quinoa HOM05D006303 ORTHO05D008007 9.5e-17 92.0 301 38.9
Nn2g11148 Nelumbo nucifera HOM05D006303 ORTHO05D008007 4.4e-14 83.2 150 61.3
ATR0626G102 Amborella trichopoda HOM05D006303 ORTHO05D008007 6.4e-13 79.3 214 40.7
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.0e-10 72.0 282 30.5
SEGI_38862 Sequoiadendron giganteum HOM05D006303 ORTHO05D008007 3.0e-10 70.5 396 32.8
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 1.1e-09 68.6 338 26.9
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 1.2e-08 65.1 326 27.3
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.6e-08 64.7 283 29.3
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 2.8e-08 63.9 335 29.6
SEGI_24344 Sequoiadendron giganteum HOM05D001976 ORTHO05D001960 3.6e-08 63.5 302 27.2
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 4.7e-08 63.2 337 26.4
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 6.2e-08 62.8 308 26.0
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 1.4e-07 61.6 335 26.6
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 1.8e-07 61.2 327 27.2
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 1.8e-07 61.2 340 26.8
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 2.4e-07 60.8 342 26.9
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 3.1e-07 60.5 336 27.1
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 3.1e-07 60.5 317 25.6
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 5.2e-07 59.7 317 25.6
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 6.9e-07 59.3 334 27.5
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 6.9e-07 59.3 327 29.1
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 9.0e-07 58.9 328 25.0
ATR0100G018 Amborella trichopoda HOM05D004504 ORTHO05D005324 1.2e-06 58.5 175 30.9
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 1.2e-06 58.5 336 25.9
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 1.2e-06 58.5 330 28.8
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 1.5e-06 58.2 343 28.0
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 1.5e-06 58.2 343 28.0
TAR623G1231 Trochodendron aralioides HOM05D002337 ORTHO05D002412 1.5e-06 58.2 59 55.9
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 2.0e-06 57.8 346 25.1
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 2.0e-06 57.8 344 27.9
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 2.6e-06 57.4 346 28.9
C04p10660 Brassica napus HOM05D002337 ORTHO05D002412 4.4e-06 56.6 64 54.7
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 4.4e-06 56.6 323 25.1
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 4.4e-06 56.6 87 46.0
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 4.4e-06 56.6 86 41.9
Dinv35665 Davidia involucrata HOM05D002337 ORTHO05D002412 5.8e-06 56.2 64 51.6
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 5.8e-06 56.2 310 26.5
BraA05t19825Z Brassica rapa HOM05D002337 ORTHO05D002412 7.6e-06 55.8 64 53.1
BcaB02g09285 Brassica carinata HOM05D002337 ORTHO05D002412 9.9e-06 55.5 64 54.7
A05p08570 Brassica napus HOM05D002337 ORTHO05D002412 9.9e-06 55.5 64 53.1
BolC4t22658H Brassica oleracea HOM05D002337 ORTHO05D002412 9.9e-06 55.5 64 53.1
Carub.0004s1928 Capsella rubella HOM05D002337 ORTHO05D002412 9.9e-06 55.5 69 53.6
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 9.9e-06 55.5 330 25.2
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 9.9e-06 55.5 302 25.8
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 9.9e-06 55.5 311 25.4
PGR004G0949 Punica granatum HOM05D002337 ORTHO05D002412 9.9e-06 55.5 59 55.9


User provided reference genes

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