Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g26153 Nelumbo nucifera HOM05D006658 ORTHO05D008515 1.4e-215 752.7 387 100.0
TAR365G0289 Trochodendron aralioides HOM05D006658 ORTHO05D008515 1.2e-148 530.4 378 73.5
GSVIVG01017866001 Vitis vinifera HOM05D006658 ORTHO05D008515 1.6e-129 466.8 389 65.6
MBI17_g29609_MAGBIO Magnolia biondii HOM05D006658 ORTHO05D008515 2.0e-129 466.5 354 71.2
PSO170G4721 Papaver somniferum HOM05D006658 ORTHO05D008515 2.3e-128 463.0 337 73.9
Aqoxy2G03225 Aquilegia oxysepala HOM05D006658 ORTHO05D008515 2.9e-128 462.6 339 71.7
Cfa015553 Carpinus fangiana HOM05D006658 ORTHO05D008515 4.3e-127 458.8 380 65.5
Haze_00994 Corylus avellana HOM05D006658 ORTHO05D008515 9.5e-127 457.6 380 65.5
CiPaw.02G090200 Carya illinoinensis HOM05D006658 ORTHO05D008515 1.3e-123 447.2 344 69.2
Manes.15G021400 Manihot esculenta HOM05D006658 ORTHO05D008515 1.0e-120 437.6 335 68.4
Potri.008G199900 Populus trichocarpa HOM05D006658 ORTHO05D008515 1.3e-120 437.2 343 67.6
PSO407G0441 Papaver somniferum HOM05D006658 ORTHO05D008515 1.7e-120 436.8 267 82.4
Dinv38362 Davidia involucrata HOM05D006658 ORTHO05D008515 5.0e-120 435.3 344 66.6
QL06p005937 Quercus lobata HOM05D006658 ORTHO05D008515 1.9e-119 433.3 349 67.6
Rhsim02G0017700 Rhododendron simsii HOM05D006658 ORTHO05D008515 7.3e-119 431.4 368 63.3
MELO3C021391.2 Cucumis melo HOM05D006658 ORTHO05D008515 1.1e-117 427.6 379 60.7
Eucgr.E03351 Eucalyptus grandis HOM05D006658 ORTHO05D008515 3.1e-117 426.0 359 64.1
Sabra08G0161000 Salix brachista HOM05D006658 ORTHO05D008515 8.9e-117 424.5 355 65.9
Prupe.1G148500 Prunus persica HOM05D006658 ORTHO05D008515 2.0e-116 423.3 334 67.7
vmacro15292 Vaccinium macrocarpon HOM05D006658 ORTHO05D008515 4.4e-116 422.2 382 60.5
MD13G1180000 Malus domestica HOM05D006658 ORTHO05D008515 2.2e-115 419.9 343 65.3
ClCG06G005690 Citrullus lanatus HOM05D006658 ORTHO05D008515 1.4e-114 417.2 379 59.4
Cpa.g.sc16.52 Carica papaya HOM05D006658 ORTHO05D008515 1.9e-114 416.8 381 61.2
Atru.chr4.2671 Acer truncatum HOM05D006658 ORTHO05D008515 5.4e-114 415.2 383 60.8
Ciclev10005116m.g Citrus clementina HOM05D006658 ORTHO05D008515 1.2e-113 414.1 351 65.8
CsaV3_6G005460 Cucumis sativus L. HOM05D006658 ORTHO05D008515 3.5e-113 412.5 379 58.6
Duzib212G0844 Durio zibethinus HOM05D006658 ORTHO05D008515 6.0e-113 411.8 313 68.7
Actinidia00076 Actinidia chinensis HOM05D006658 ORTHO05D008515 3.9e-112 409.1 336 65.8
TWI53G0915 Tripterygium wilfordii HOM05D006658 ORTHO05D008515 1.5e-111 407.1 328 65.9
Sed0019307 Sechium edule HOM05D006658 ORTHO05D008515 2.5e-111 406.4 297 68.7
FAN12G0854 Fragaria x ananassa HOM05D006658 ORTHO05D008515 4.3e-111 405.6 372 58.1
TPR.G28916 Trifolium pratense HOM05D000887 ORTHO05D000908 4.3e-111 405.6 299 69.9
FvH4_4g14170 Fragaria vesca HOM05D006658 ORTHO05D008515 5.6e-111 405.2 372 58.3
Glyma.15G101900 Glycine max HOM05D006658 ORTHO05D008515 9.5e-111 404.4 333 64.3
Medtr2g021220 Medicago truncatula HOM05D006658 ORTHO05D008515 1.2e-110 404.1 363 60.9
VMungo0540G0090 Vigna mungo HOM05D006658 ORTHO05D008515 2.1e-110 403.3 329 66.6
DCAR_027140 Daucus carota HOM05D006658 ORTHO05D008515 2.8e-110 402.9 298 70.5
PGR065G0004 Punica granatum HOM05D006658 ORTHO05D008515 2.8e-110 402.9 320 66.9
Phvul.006G155900 Phaseolus vulgaris HOM05D006658 ORTHO05D008515 6.2e-110 401.7 331 65.0
Gorai.006G218300 Gossypium raimondii HOM05D006658 ORTHO05D008515 1.1e-109 401.0 379 58.3
Thecc.04G218900 Theobroma cacao HOM05D006658 ORTHO05D008515 1.1e-109 401.0 383 59.0
Lsat_1_v5_gn_5_165480 Lactuca sativa HOM05D006658 ORTHO05D008515 1.4e-109 400.6 330 64.2
arahy.Tifrunner.gnm1.ann1.V9Y9T8 Arachis hypogaea HOM05D006658 ORTHO05D008515 1.8e-109 400.2 315 66.0
CANSAT78G1897 Cannabis sativa HOM05D006658 ORTHO05D008515 3.1e-109 399.4 378 57.7
Lalb_Chr15g0087271 Lupinus albus HOM05D006658 ORTHO05D008515 3.1e-109 399.4 343 63.3
RcHm_v2.0_Chr4g0419051 Rosa chinensis HOM05D006658 ORTHO05D008515 4.0e-109 399.1 342 61.1
HanXRQChr12g0359491 Helianthus annuus HOM05D006658 ORTHO05D008515 1.5e-108 397.1 325 64.9
THA.LOC104820222 Tarenaya hassleriana HOM05D006658 ORTHO05D008515 1.5e-108 397.1 324 65.4
Sc13g0003830 Simmondsia chinensis HOM05D006658 ORTHO05D008515 2.0e-108 396.7 324 65.4
Ca_00605_v3 Cicer arietinum L. HOM05D000887 ORTHO05D000908 4.4e-108 395.6 334 63.2
Os05g0400600 Oryza sativa ssp. japonica HOM05D006658 ORTHO05D008515 4.4e-108 395.6 363 58.7
arahy.Tifrunner.gnm1.ann1.Q3CYV3 Arachis hypogaea HOM05D006658 ORTHO05D008515 2.9e-107 392.9 315 65.1
Lj6g0017983 Lotus japonicus HOM05D006658 ORTHO05D008515 2.9e-107 392.9 360 60.0
Zm00001eb346810 Zea mays HOM05D006658 ORTHO05D008515 3.7e-107 392.5 314 64.3
HPP92_001401 Vanilla planifolia HOM05D006658 ORTHO05D008515 4.9e-107 392.1 258 74.8
ATR0626G018 Amborella trichopoda HOM05D006658 ORTHO05D007095 1.1e-106 391.0 332 64.5
BcaB04g19174 Brassica carinata HOM05D006658 ORTHO05D008515 4.1e-106 389.0 336 61.6
A03p42320 Brassica napus HOM05D006658 ORTHO05D008515 3.5e-105 386.0 292 67.5
BraA03t13384Z Brassica rapa HOM05D006658 ORTHO05D008515 3.5e-105 386.0 292 67.5
BcaC01g03498 Brassica carinata HOM05D006658 ORTHO05D008515 7.8e-105 384.8 277 70.0
Carub.0003s2162 Capsella rubella HOM05D006658 ORTHO05D008515 1.3e-104 384.0 343 59.5
Thhalv10020897m.g Eutrema salsugineum HOM05D006658 ORTHO05D008515 3.9e-104 382.5 339 61.7
Sp3g19610 Schrenkiella parvula HOM05D006658 ORTHO05D008515 3.9e-104 382.5 289 67.1
Cc03_g02920 Coffea canephora HOM05D006658 ORTHO05D008515 8.6e-104 381.3 327 63.0
AL3G35700 Arabidopsis lyrata HOM05D006658 ORTHO05D008515 1.9e-103 380.2 338 60.4
AT3G21580 Arabidopsis thaliana HOM05D006658 ORTHO05D008515 1.9e-103 380.2 338 59.8
FAN07G2752 Fragaria x ananassa HOM05D006658 ORTHO05D008515 5.6e-103 378.6 366 56.6
CARHR097540 Cardamine hirsuta HOM05D006658 ORTHO05D008515 9.5e-103 377.9 336 60.4
PGR004G0022 Punica granatum HOM05D006658 ORTHO05D008515 3.6e-102 375.9 309 65.4
BolC3t17462H Brassica oleracea HOM05D006658 ORTHO05D008515 6.2e-102 375.2 277 68.6
C03p51780 Brassica napus HOM05D006658 ORTHO05D008515 1.4e-101 374.0 277 68.2
Aa31sc174G10 Aethionema arabicum HOM05D006658 ORTHO05D008515 2.4e-101 373.2 324 61.1
MSTRG.24762 Avicennia marina HOM05D006658 ORTHO05D008515 5.2e-101 372.1 378 54.5
SalBow5G3198 Salvia bowleyana HOM05D006658 ORTHO05D008515 3.2e-98 362.8 341 57.2
EL10Ac4g08937 Beta vulgaris HOM05D006658 ORTHO05D008515 9.2e-98 361.3 303 63.7
Migut.N00139 Erythranthe guttata HOM05D006658 ORTHO05D008515 3.5e-97 359.4 288 62.2
Solyc01g080300.4 Solanum lycopersicum HOM05D006658 ORTHO05D008515 1.0e-96 357.8 346 57.5
PGSC0003DMG400004353 Solanum tuberosum HOM05D006658 ORTHO05D008515 8.7e-96 354.8 345 55.9
Sopen01g032090 Solanum pennellii HOM05D006658 ORTHO05D008515 1.5e-95 354.0 345 55.9
SGA_v2.0_scaffold107G30765 Striga asiatica HOM05D006658 ORTHO05D008515 2.5e-95 353.2 321 57.9
CAN.G522.10 Capsicum annuum HOM05D006658 ORTHO05D008515 5.6e-95 352.1 339 56.9
SEGI_40702 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 9.6e-95 351.3 286 61.2
RcHm_v2.0_Chr2g0086241 Rosa chinensis HOM05D006658 ORTHO05D008515 2.1e-94 350.1 347 55.3
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 6.2e-94 348.6 349 55.6
COL.COLO4_21620 Corchorus olitorius HOM05D006658 ORTHO05D008515 9.0e-93 344.7 343 59.2
FAN22G2256 Fragaria x ananassa HOM05D006658 ORTHO05D008515 2.9e-91 339.7 224 74.6
Nitab4.5_0003070g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008515 3.8e-91 339.3 302 59.3
Psat5g176560 Pisum sativum HOM05D006658 ORTHO05D008515 1.6e-89 334.0 387 52.2
Ah.06g191650 Amaranthus hybridus HOM05D006658 ORTHO05D008515 3.5e-89 332.8 315 58.7
Gohir.D09G194900 Gossypium hirsutum HOM05D006658 ORTHO05D008515 1.7e-88 330.5 344 54.7
Gohir.A09G200700 Gossypium hirsutum HOM05D006658 ORTHO05D008515 3.9e-88 329.3 393 50.1
CDE02G1914 Ceratophyllum demersum HOM05D006658 ORTHO05D008515 7.3e-87 325.1 346 54.6
Glyma.13G210900 Glycine max HOM05D006658 ORTHO05D008515 3.6e-86 322.8 307 58.0
Pp3c16_5660 Physcomitrium patens HOM05D006658 ORTHO05D008515 2.9e-83 313.2 266 57.1
Mapoly0015s0173 Marchantia polymorpha HOM05D006658 ORTHO05D008515 4.9e-83 312.4 260 59.2
ECA234G3592 Erigeron canadensis HOM05D006658 ORTHO05D008515 3.9e-80 302.8 205 73.2
Lj3A803G20 Lonicera japonica HOM05D006658 ORTHO05D008515 3.9e-80 302.8 326 53.1
RcHm_v2.0_Chr5g0064291 Rosa chinensis HOM05D006658 ORTHO05D008515 2.5e-79 300.1 198 74.2
CSS0022396 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 7.4e-79 298.5 247 62.3
AUR62004779 Chenopodium quinoa HOM05D006658 ORTHO05D008515 3.4e-76 289.7 329 51.4
CDE09G1086 Ceratophyllum demersum HOM05D002356 ORTHO05D002546 2.9e-75 286.6 291 56.0
SMO361G0230 Selaginella moellendorffii HOM05D006658 ORTHO05D008515 2.3e-72 276.9 301 48.2
unitig_61.g26008 Utricularia gibba HOM05D006658 ORTHO05D008515 1.5e-71 274.2 280 51.8
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 2.8e-70 270.0 271 51.3
Nn1g02127 Nelumbo nucifera HOM05D006658 ORTHO05D008515 2.4e-69 266.9 204 72.5
RcHm_v2.0_Chr5g0045591 Rosa chinensis HOM05D006658 ORTHO05D008515 1.5e-68 264.2 201 66.7
CSS0004357 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 3.9e-64 249.6 175 70.9
Manes.07G121800 Manihot esculenta HOM05D006658 ORTHO05D008515 2.5e-63 246.9 163 76.7
Psat1g186040 Pisum sativum HOM05D006658 ORTHO05D008515 2.0e-60 237.3 176 71.0
AUR62003399 Chenopodium quinoa HOM05D006658 ORTHO05D008515 5.0e-59 232.6 223 57.4
Hund26050 Selenicereus undatus HOM05D006658 ORTHO05D008515 2.6e-52 210.3 162 65.4
Cre12.g533950 Chlamydomonas reinhardtii HOM05D006658 ORTHO05D008515 2.7e-49 200.3 304 37.2
PRCOL_00004089 Prasinoderma coloniale HOM05D006658 ORTHO05D008515 5.9e-44 182.6 279 41.2
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 1.7e-43 181.0 334 41.0
MCO01G250 Micromonas commoda HOM05D006658 ORTHO05D008515 1.8e-40 171.0 250 37.2
HPP92_001340 Vanilla planifolia HOM05D006658 ORTHO05D008515 5.0e-35 152.9 105 73.3
SEGI_22040 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 1.2e-33 148.3 105 69.5
Peaxi162Scf00095g00724 Petunia axillaris HOM05D006658 ORTHO05D008515 5.0e-27 126.3 120 55.0
Psat2g070960 Pisum sativum HOM05D006658 ORTHO05D008515 6.5e-27 125.9 95 64.2
Actinidia32371 Actinidia chinensis HOM05D006658 ORTHO05D008515 6.1e-25 119.4 82 79.3
Actinidia08452 Actinidia chinensis HOM05D006658 ORTHO05D008515 5.7e-23 112.8 82 75.6
Oeu023652.1 Olea europaea HOM05D006658 ORTHO05D008515 2.1e-17 94.4 152 43.4
Oeu037664.1 Olea europaea HOM05D006658 ORTHO05D008515 1.2e-12 78.6 111 45.0
HanXRQChr09g0256171 Helianthus annuus HOM05D006658 ORTHO05D008515 1.6e-12 78.2 62 62.9
HanXRQChr04g0123631 Helianthus annuus HOM05D034347 ORTHO05D227534 8.9e-08 62.4 46 67.4


User provided reference genes

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