Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g26101 Nelumbo nucifera HOM05D007734 ORTHO05D009807 1.5e-47 192.6 101 100.0
TAR365G0453 Trochodendron aralioides HOM05D007734 ORTHO05D009807 2.1e-38 162.2 101 81.2
CiPaw.02G088300 Carya illinoinensis HOM05D007734 ORTHO05D009807 4.1e-29 131.3 91 71.4
MD13G1176100 Malus domestica HOM05D007734 ORTHO05D009807 2.6e-28 128.6 91 68.1
FvH4_4g16860 Fragaria vesca HOM05D007734 ORTHO05D009807 2.2e-27 125.6 91 71.4
FAN12G2573 Fragaria x ananassa HOM05D007734 ORTHO05D009807 2.2e-27 125.6 91 71.4
RcHm_v2.0_Chr4g0420431 Rosa chinensis HOM05D007734 ORTHO05D009807 2.9e-27 125.2 91 72.5
QL06p006592 Quercus lobata HOM05D007734 ORTHO05D009807 5.0e-27 124.4 91 69.2
CiPaw.01G155700 Carya illinoinensis HOM05D007734 ORTHO05D009807 6.5e-27 124.0 91 70.3
FAN07G1074 Fragaria x ananassa HOM05D007734 ORTHO05D009807 6.5e-27 124.0 91 72.5
PSO302G0168 Papaver somniferum HOM05D007734 ORTHO05D009807 8.5e-27 123.6 93 68.8
MBI19_g13511_MAGBIO Magnolia biondii HOM05D007734 ORTHO05D009807 1.1e-26 123.2 94 63.8
FAN12G0936 Fragaria x ananassa HOM05D007734 ORTHO05D009807 1.4e-26 122.9 91 69.2
ClCG06G005560 Citrullus lanatus HOM05D007734 ORTHO05D009807 1.9e-26 122.5 94 63.8
FAN17G2648 Fragaria x ananassa HOM05D007734 ORTHO05D009807 1.9e-26 122.5 91 71.4
Prupe.1G145200 Prunus persica HOM05D007734 ORTHO05D009807 1.9e-26 122.5 91 64.8
MD16G1177900 Malus domestica HOM05D007734 ORTHO05D009807 2.5e-26 122.1 91 65.9
MELO3C021378.2 Cucumis melo HOM05D007734 ORTHO05D009807 3.2e-26 121.7 94 62.8
CsaV3_6G005600 Cucumis sativus L. HOM05D007734 ORTHO05D009807 5.5e-26 120.9 91 63.7
CANSAT78G1562 Cannabis sativa HOM05D007734 ORTHO05D009807 1.2e-25 119.8 91 62.6
CDE05G0384 Ceratophyllum demersum HOM05D007734 ORTHO05D009807 2.7e-25 118.6 90 68.9
Sed0016523 Sechium edule HOM05D007734 ORTHO05D009807 3.6e-25 118.2 94 62.8
Eucgr.H03661 Eucalyptus grandis HOM05D007734 ORTHO05D009807 6.1e-25 117.5 97 59.8
GSVIVG01017837001 Vitis vinifera HOM05D007734 ORTHO05D009807 6.1e-25 117.5 94 61.7
Hma1.2p1_0643F.1_g194590 Hydrangea macrophylla HOM05D007734 ORTHO05D009807 1.0e-24 116.7 94 61.7
TWI73G0877 Tripterygium wilfordii HOM05D007734 ORTHO05D009807 1.8e-24 115.9 91 62.6
Sed0021110 Sechium edule HOM05D007734 ORTHO05D009807 2.3e-24 115.5 94 63.8
Atru.chr4.2717 Acer truncatum HOM05D007734 ORTHO05D009807 3.9e-24 114.8 89 65.2
Aa31LG11G10850 Aethionema arabicum HOM05D007734 ORTHO05D009807 5.1e-24 114.4 91 62.6
Cfa015520 Carpinus fangiana HOM05D007734 ORTHO05D009807 5.1e-24 114.4 92 63.0
Thhalv10015120m.g Eutrema salsugineum HOM05D007734 ORTHO05D009807 8.8e-24 113.6 89 62.9
Haze_01029 Corylus avellana HOM05D007734 ORTHO05D009807 2.0e-23 112.5 92 63.0
CARHR194160 Cardamine hirsuta HOM05D007734 ORTHO05D009807 2.5e-23 112.1 89 62.9
Sabra08G0163100 Salix brachista HOM05D007734 ORTHO05D009807 5.7e-23 110.9 79 67.1
Duzib151G0459 Durio zibethinus HOM05D007734 ORTHO05D009807 7.4e-23 110.5 77 68.8
TWI09G1295 Tripterygium wilfordii HOM05D007734 ORTHO05D009807 7.4e-23 110.5 91 62.6
AT5G18850 Arabidopsis thaliana HOM05D007734 ORTHO05D009807 1.7e-22 109.4 89 60.7
Carub.0006s1717 Capsella rubella HOM05D007734 ORTHO05D009807 1.7e-22 109.4 88 61.4
AL6G30210 Arabidopsis lyrata HOM05D007734 ORTHO05D009807 2.2e-22 109.0 89 61.8
BraA03t10238Z Brassica rapa HOM05D007734 ORTHO05D009807 2.8e-22 108.6 85 62.4
Dinv44448 Davidia involucrata HOM05D007734 ORTHO05D009807 2.8e-22 108.6 94 59.6
Gorai.006G074800 Gossypium raimondii HOM05D007734 ORTHO05D009807 2.8e-22 108.6 77 66.2
Lj4g0025137 Lotus japonicus HOM05D007734 ORTHO05D009807 2.8e-22 108.6 78 66.7
Manes.03G189200 Manihot esculenta HOM05D007734 ORTHO05D009807 3.7e-22 108.2 91 60.4
Gohir.D09G060100 Gossypium hirsutum HOM05D007734 ORTHO05D009807 8.2e-22 107.1 77 64.9
Gohir.D10G164200 Gossypium hirsutum HOM05D007734 ORTHO05D009807 8.2e-22 107.1 91 60.4
Gorai.011G183300 Gossypium raimondii HOM05D007734 ORTHO05D009807 8.2e-22 107.1 91 60.4
Oeu044804.1 Olea europaea HOM05D007734 ORTHO05D009807 8.2e-22 107.1 91 59.3
BcaB01g05276 Brassica carinata HOM05D007734 ORTHO05D009807 1.4e-21 106.3 85 60.0
BolC3t13544H Brassica oleracea HOM05D007734 ORTHO05D009807 1.4e-21 106.3 85 60.0
Thecc.04G274000 Theobroma cacao HOM05D007734 ORTHO05D009807 1.8e-21 105.9 78 64.1
C03p10680 Brassica napus HOM05D007734 ORTHO05D009807 2.4e-21 105.5 85 60.0
Peaxi162Scf00095g00125 Petunia axillaris HOM05D007734 ORTHO05D009807 2.4e-21 105.5 91 56.0
Glyma.07G252900 Glycine max HOM05D007734 ORTHO05D009807 3.1e-21 105.1 78 64.1
Phvul.003G099200 Phaseolus vulgaris HOM05D007734 ORTHO05D009807 3.1e-21 105.1 78 66.7
ATR0487G018 Amborella trichopoda HOM05D007734 ORTHO05D009807 4.1e-21 104.8 96 57.3
Glyma.17G021500 Glycine max HOM05D007734 ORTHO05D009807 4.1e-21 104.8 78 61.5
Gohir.A10G104500 Gossypium hirsutum HOM05D007734 ORTHO05D009807 4.1e-21 104.8 75 68.0
Potri.008G197300 Populus trichocarpa HOM05D007734 ORTHO05D009807 5.3e-21 104.4 79 63.3
Sp6g25520 Schrenkiella parvula HOM05D007734 ORTHO05D009807 9.1e-21 103.6 88 58.0
SGA_v2.0_scaffold142G35667 Striga asiatica HOM05D007734 ORTHO05D009807 9.1e-21 103.6 92 56.5
Migut.G00233 Erythranthe guttata HOM05D007734 ORTHO05D009807 1.2e-20 103.2 78 62.8
Ciclev10007097m.g Citrus clementina HOM05D007734 ORTHO05D009807 1.5e-20 102.8 89 58.4
Gohir.A09G061200 Gossypium hirsutum HOM05D007734 ORTHO05D009807 1.5e-20 102.8 77 62.3
arahy.Tifrunner.gnm1.ann1.80YKV9 Arachis hypogaea HOM05D007734 ORTHO05D009807 2.0e-20 102.4 73 65.8
CDE05G0036 Ceratophyllum demersum HOM05D007734 ORTHO05D009807 2.0e-20 102.4 69 71.0
CSS0028590 Camellia sinensis var. sinensis HOM05D007734 ORTHO05D009807 2.6e-20 102.1 94 58.5
Duzib052G0038 Durio zibethinus HOM05D007734 ORTHO05D009807 3.4e-20 101.7 77 63.6
arahy.Tifrunner.gnm1.ann1.F9B3QK Arachis hypogaea HOM05D007734 ORTHO05D009807 4.5e-20 101.3 72 66.7
Cc03_g02610 Coffea canephora HOM05D007734 ORTHO05D009807 7.7e-20 100.5 91 60.4
CAN.G627.13 Capsicum annuum HOM05D007734 ORTHO05D009807 1.0e-19 100.1 91 53.8
BcaB01g04888 Brassica carinata HOM05D007734 ORTHO05D009807 1.3e-19 99.8 85 57.6
Potri.010G026900 Populus trichocarpa HOM05D007734 ORTHO05D009807 2.2e-19 99.0 79 63.3
Actinidia40206 Actinidia chinensis HOM05D007734 ORTHO05D009807 1.1e-18 96.7 94 57.4
Nitab4.5_0009396g0030 Nicotiana tabacum HOM05D007734 ORTHO05D009807 1.1e-18 96.7 72 62.5
PGSC0003DMG400032093 Solanum tuberosum HOM05D007734 ORTHO05D009807 1.9e-18 95.9 85 56.5
Sopen01g032410 Solanum pennellii HOM05D007734 ORTHO05D009807 3.2e-18 95.1 85 55.3
Solyc01g080590.3 Solanum lycopersicum HOM05D007734 ORTHO05D009807 7.2e-18 94.0 85 54.1
Ca_30429_v3 Cicer arietinum L. HOM05D007734 ORTHO05D009807 3.6e-17 91.7 70 61.4
SEGI_32711 Sequoiadendron giganteum HOM05D007734 ORTHO05D009807 1.4e-16 89.7 99 45.5
Lalb_Chr07g0177521 Lupinus albus HOM05D007734 ORTHO05D009807 1.8e-16 89.4 69 59.4
Aqoxy5G00589 Aquilegia oxysepala HOM05D007734 ORTHO05D009807 3.0e-16 88.6 86 53.5
THA.LOC104818832 Tarenaya hassleriana HOM05D002550 ORTHO05D003420 3.3e-15 85.1 74 54.1
MSTRG.3964 Avicennia marina HOM05D007734 ORTHO05D009807 4.4e-15 84.7 105 47.6
Psat4g030040 Pisum sativum HOM05D007734 ORTHO05D009807 4.4e-15 84.7 64 60.9
FAN22G2010 Fragaria x ananassa HOM05D007734 ORTHO05D001690 8.5e-11 70.5 49 71.4
Sc13g0003750 Simmondsia chinensis HOM05D007734 ORTHO05D009807 3.6e-09 65.1 50 58.0
A03p09150 Brassica napus HOM05D007734 ORTHO05D009807 1.4e-08 63.2 44 59.1
Nitab4.5_0000059g0330 Nicotiana tabacum HOM05D007734 ORTHO05D009807 3.0e-08 62.0 55 49.1
BcaB08g36639 Brassica carinata HOM05D007734 ORTHO05D009807 7.5e-07 57.4 41 61.0


User provided reference genes

Program Settings