Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g26080 Nelumbo nucifera HOM05D006058 ORTHO05D007686 2.2e-73 278.9 138 100.0
CSS0022820 Camellia sinensis var. sinensis HOM05D006058 ORTHO05D007686 2.5e-61 238.8 136 83.1
TAR636G0052 Trochodendron aralioides HOM05D006058 ORTHO05D007686 8.8e-59 230.3 138 81.2
Aqoxy4G03219 Aquilegia oxysepala HOM05D006058 ORTHO05D007686 2.0e-58 229.2 138 77.5
Oeu032852.1 Olea europaea HOM05D006058 ORTHO05D007686 3.3e-58 228.4 136 79.4
Nitab4.5_0009592g0010 Nicotiana tabacum HOM05D006058 ORTHO05D007686 4.4e-58 228.0 136 76.5
vmacro02518 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 5.7e-58 227.6 136 79.4
Nitab4.5_0001499g0140 Nicotiana tabacum HOM05D006058 ORTHO05D007686 1.3e-57 226.5 136 76.5
Peaxi162Scf00273g00034 Petunia axillaris HOM05D006058 ORTHO05D007686 2.2e-57 225.7 136 76.5
FvH4_2g24470 Fragaria vesca HOM05D006058 ORTHO05D007686 3.7e-57 224.9 135 80.0
FAN27G3183 Fragaria x ananassa HOM05D006058 ORTHO05D007686 3.7e-57 224.9 135 80.0
GSVIVG01011025001 Vitis vinifera HOM05D006058 ORTHO05D007686 4.8e-57 224.6 138 75.4
RcHm_v2.0_Chr6g0292311 Rosa chinensis HOM05D006058 ORTHO05D007686 8.2e-57 223.8 135 77.8
Eucgr.H01614 Eucalyptus grandis HOM05D006058 ORTHO05D007686 1.4e-56 223.0 136 74.3
FAN24G0575 Fragaria x ananassa HOM05D006058 ORTHO05D007686 1.4e-56 223.0 135 79.3
Sc26g0003460 Simmondsia chinensis HOM05D006058 ORTHO05D007686 1.4e-56 223.0 136 76.5
SGA_v2.0_scaffold130G34295 Striga asiatica HOM05D006058 ORTHO05D007686 1.4e-56 223.0 135 77.0
Duzib211G0114 Durio zibethinus HOM05D006058 ORTHO05D007686 2.4e-56 222.2 138 77.5
Manes.07G087200 Manihot esculenta HOM05D006058 ORTHO05D007686 2.4e-56 222.2 136 76.5
PSO407G0089 Papaver somniferum HOM05D006058 ORTHO05D007686 2.4e-56 222.2 138 76.8
Peaxi162Scf00026g00313 Petunia axillaris HOM05D006058 ORTHO05D007686 2.4e-56 222.2 136 77.9
Hma1.2p1_1049F.1_g251900 Hydrangea macrophylla HOM05D006058 ORTHO05D007686 3.1e-56 221.9 136 75.7
Hund02088 Selenicereus undatus HOM05D006058 ORTHO05D007686 4.1e-56 221.5 136 76.5
PSO170G2912 Papaver somniferum HOM05D006058 ORTHO05D007686 7.0e-56 220.7 138 75.4
Prupe.8G268000 Prunus persica HOM05D006058 ORTHO05D007686 7.0e-56 220.7 138 76.8
Thecc.01G288100 Theobroma cacao HOM05D006058 ORTHO05D007686 9.1e-56 220.3 138 76.1
Hma1.2p1_0399F.1_g144340 Hydrangea macrophylla HOM05D006058 ORTHO05D007686 1.2e-55 219.9 136 75.7
MBI07_g41269_MAGBIO Magnolia biondii HOM05D006058 ORTHO05D007686 1.2e-55 219.9 138 75.4
Nitab4.5_0004672g0030 Nicotiana tabacum HOM05D006058 ORTHO05D007686 1.2e-55 219.9 136 75.0
PGR119G2453 Punica granatum HOM05D006058 ORTHO05D007686 2.0e-55 219.2 137 74.5
DCAR_018372 Daucus carota HOM05D006058 ORTHO05D007686 3.5e-55 218.4 137 74.5
Psat4g228760 Pisum sativum HOM05D006058 ORTHO05D007686 5.9e-55 217.6 136 73.5
CANSAT25G3509 Cannabis sativa HOM05D006058 ORTHO05D007686 1.0e-54 216.9 132 77.3
MD04G1200100 Malus domestica HOM05D006058 ORTHO05D007686 1.0e-54 216.9 141 73.8
CDE02G3716 Ceratophyllum demersum HOM05D006058 ORTHO05D007686 2.2e-54 215.7 135 74.1
Lj2g0026207 Lotus japonicus HOM05D006058 ORTHO05D007686 2.2e-54 215.7 138 73.2
Gohir.A12G007700 Gossypium hirsutum HOM05D006058 ORTHO05D007686 2.9e-54 215.3 138 73.2
Lalb_Chr07g0187491 Lupinus albus HOM05D006058 ORTHO05D007686 2.9e-54 215.3 138 74.6
AUR62036672 Chenopodium quinoa HOM05D006058 ORTHO05D007686 3.8e-54 214.9 136 75.0
Ah.10g033440 Amaranthus hybridus HOM05D006058 ORTHO05D007686 5.0e-54 214.5 136 73.5
Potri.014G083500 Populus trichocarpa HOM05D006058 ORTHO05D007686 6.5e-54 214.2 139 73.4
CiPaw.07G098200 Carya illinoinensis HOM05D006058 ORTHO05D007686 8.5e-54 213.8 138 76.1
TWI23G1093 Tripterygium wilfordii HOM05D006058 ORTHO05D007686 8.5e-54 213.8 137 75.2
vmacro04594 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 8.5e-54 213.8 131 77.1
Lju470C11T9 Lonicera japonica HOM05D006058 ORTHO05D007686 1.5e-53 213.0 138 76.8
QL12p042454 Quercus lobata HOM05D006058 ORTHO05D007686 1.5e-53 213.0 137 76.6
Gohir.D12G007100 Gossypium hirsutum HOM05D006058 ORTHO05D007686 2.5e-53 212.2 138 71.7
Ca_03230_v3 Cicer arietinum L. HOM05D006058 ORTHO05D007686 3.2e-53 211.8 136 73.5
Glyma.01G089000 Glycine max HOM05D006058 ORTHO05D007686 5.5e-53 211.1 135 74.1
Glyma.04G146600 Glycine max HOM05D006058 ORTHO05D007686 5.5e-53 211.1 135 74.1
Gorai.008G007300 Gossypium raimondii HOM05D006058 ORTHO05D007686 7.2e-53 210.7 135 71.9
HanXRQChr03g0093951 Helianthus annuus HOM05D006058 ORTHO05D007686 7.2e-53 210.7 138 73.2
MD12G1212600 Malus domestica HOM05D006058 ORTHO05D007686 7.2e-53 210.7 141 72.3
Cfa006057 Carpinus fangiana HOM05D006058 ORTHO05D007686 9.4e-53 210.3 138 75.4
Cc01_g20070 Coffea canephora HOM05D006058 ORTHO05D007686 1.6e-52 209.5 142 72.5
Ciclev10022776m.g Citrus clementina HOM05D006058 ORTHO05D007686 2.1e-52 209.1 140 74.3
COL.COLO4_08051 Corchorus olitorius HOM05D006058 ORTHO05D007686 2.1e-52 209.1 138 73.9
MELO3C015303.2 Cucumis melo HOM05D006058 ORTHO05D007686 3.6e-52 208.4 137 72.3
CsaV3_1G038790 Cucumis sativus L. HOM05D006058 ORTHO05D007686 3.6e-52 208.4 137 72.3
TPR.G16722 Trifolium pratense HOM05D006058 ORTHO05D007686 3.6e-52 208.4 136 70.6
Sabra02G0198900 Salix brachista HOM05D006058 ORTHO05D007686 4.7e-52 208.0 139 71.2
HanXRQChr15g0476421 Helianthus annuus HOM05D006058 ORTHO05D007686 2.3e-51 205.7 139 72.7
TPR.G8807 Trifolium pratense HOM05D006058 ORTHO05D007686 3.0e-51 205.3 136 69.1
unitig_0.g1187 Utricularia gibba HOM05D006058 ORTHO05D007686 3.0e-51 205.3 136 68.4
Hund29081 Selenicereus undatus HOM05D006058 ORTHO05D007686 5.2e-51 204.5 127 75.6
Hund29083 Selenicereus undatus HOM05D006058 ORTHO05D007686 5.2e-51 204.5 127 75.6
Atru.chr5.1299 Acer truncatum HOM05D006058 ORTHO05D007686 6.7e-51 204.1 138 72.5
Prupe.3G123100 Prunus persica HOM05D006058 ORTHO05D007686 8.8e-51 203.8 138 73.2
Actinidia00707 Actinidia chinensis HOM05D006058 ORTHO05D007686 1.1e-50 203.4 119 81.5
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 3.3e-50 201.8 119 80.7
Nn3g21231 Nelumbo nucifera HOM05D006058 ORTHO05D007686 5.7e-50 201.1 120 81.7
Thhalv10005102m.g Eutrema salsugineum HOM05D006058 ORTHO05D007686 1.3e-49 199.9 136 72.1
SalBow3G0902 Salvia bowleyana HOM05D006058 ORTHO05D007686 1.7e-49 199.5 132 69.7
BraA06t25979Z Brassica rapa HOM05D006058 ORTHO05D007686 2.2e-49 199.1 136 69.1
Medtr3g010210 Medicago truncatula HOM05D006058 ORTHO05D007686 2.8e-49 198.7 136 66.9
AL8G40840 Arabidopsis lyrata HOM05D006058 ORTHO05D007686 8.2e-49 197.2 136 69.9
A06p30300 Brassica napus HOM05D006058 ORTHO05D007686 1.8e-48 196.1 136 67.6
AT5G63690 Arabidopsis thaliana HOM05D006058 ORTHO05D007686 2.4e-48 195.7 136 68.4
BcaC01g02630 Brassica carinata HOM05D006058 ORTHO05D007686 2.4e-48 195.7 136 67.6
C03p62750 Brassica napus HOM05D006058 ORTHO05D007686 2.4e-48 195.7 136 67.6
Phvul.002G050500 Phaseolus vulgaris HOM05D006058 ORTHO05D007686 2.4e-48 195.7 138 66.7
TPR.G22635 Trifolium pratense HOM05D006058 ORTHO05D007686 2.4e-48 195.7 136 66.9
BcaC03g18221 Brassica carinata HOM05D006058 ORTHO05D007686 4.1e-48 194.9 139 68.3
Prupe.8G250400 Prunus persica HOM05D006058 ORTHO05D007686 5.3e-48 194.5 106 83.0
BolC3t18529H Brassica oleracea HOM05D006058 ORTHO05D007686 7.0e-48 194.1 136 66.9
BcaB02g09737 Brassica carinata HOM05D006058 ORTHO05D007686 9.1e-48 193.7 138 68.1
BolC2t12363H Brassica oleracea HOM05D006058 ORTHO05D007686 2.0e-47 192.6 139 67.6
Sp2g26790 Schrenkiella parvula HOM05D006058 ORTHO05D007686 2.0e-47 192.6 138 68.1
CARHR277600 Cardamine hirsuta HOM05D006058 ORTHO05D007686 2.6e-47 192.2 133 69.2
Aa31LG10G11090 Aethionema arabicum HOM05D006058 ORTHO05D007686 3.5e-47 191.8 136 68.4
HPP92_016068 Vanilla planifolia HOM05D006058 ORTHO05D007686 4.5e-47 191.4 135 68.1
Carub.0008s2446 Capsella rubella HOM05D006058 ORTHO05D007686 5.9e-47 191.0 139 64.7
Sopen12g005770 Solanum pennellii HOM05D006058 ORTHO05D007686 1.0e-46 190.3 134 71.6
Solyc12g014020.2 Solanum lycopersicum HOM05D006058 ORTHO05D007686 1.7e-46 189.5 124 74.2
THA.LOC104826323 Tarenaya hassleriana HOM05D006058 ORTHO05D007686 1.7e-46 189.5 134 68.7
BcaB07g29701 Brassica carinata HOM05D006058 ORTHO05D007686 3.8e-46 188.3 139 66.2
A02p42950 Brassica napus HOM05D006058 ORTHO05D007686 3.8e-46 188.3 139 66.9
C02p62900 Brassica napus HOM05D006058 ORTHO05D007686 5.0e-46 188.0 139 66.2
PGSC0003DMG400015370 Solanum tuberosum HOM05D006058 ORTHO05D007686 5.0e-46 188.0 124 74.2
Zm00001eb106990 Zea mays HOM05D006058 ORTHO05D007686 1.1e-45 186.8 138 63.0
SEGI_21939 Sequoiadendron giganteum HOM05D006058 ORTHO05D007686 3.2e-45 185.3 139 61.2
SHI14488 Sapria himalayana HOM05D006058 ORTHO05D007686 7.2e-45 184.1 139 64.7
ClCG03G017360 Citrullus lanatus HOM05D006058 ORTHO05D007686 2.1e-44 182.6 110 77.3
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 6.1e-44 181.0 119 71.4
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 1.0e-43 180.3 119 71.4
BraA02t09218Z Brassica rapa HOM05D006058 ORTHO05D007686 1.0e-43 180.3 134 65.7
EL10Ac7g17168 Beta vulgaris HOM05D006058 ORTHO05D007686 1.4e-43 179.9 136 63.2
Migut.D00240 Erythranthe guttata HOM05D006058 ORTHO05D007686 2.6e-42 175.6 139 61.2
Manes.10G061700 Manihot esculenta HOM05D006058 ORTHO05D007686 3.4e-42 175.3 130 65.4
Sed0020474 Sechium edule HOM05D006058 ORTHO05D007686 4.4e-42 174.9 109 74.3
Eucgr.H01617 Eucalyptus grandis HOM05D006058 ORTHO05D007686 2.0e-39 166.0 136 58.8
ECA240G0292 Erigeron canadensis HOM05D006058 ORTHO05D007686 2.7e-39 165.6 125 65.6
CAN.G964.10 Capsicum annuum HOM05D006058 ORTHO05D007686 1.0e-38 163.7 137 60.6
VMungo1215G3318 Vigna mungo HOM05D006058 ORTHO05D007686 2.2e-38 162.5 116 64.7
BolC4t22707H Brassica oleracea HOM05D006058 ORTHO05D007686 2.0e-34 149.4 119 60.5
ATR0225G019 Amborella trichopoda HOM05D006058 ORTHO05D007686 3.4e-34 148.7 109 65.1
Mapoly0122s0023 Marchantia polymorpha HOM05D006058 ORTHO05D007686 1.1e-32 143.7 118 54.2
TAR365G0318 Trochodendron aralioides HOM05D006058 ORTHO05D007686 1.8e-32 142.9 82 75.6
CBR_g26410 Chara braunii HOM05D006058 ORTHO05D007686 2.4e-32 142.5 121 54.5
SMO244G0033 Selaginella moellendorffii HOM05D006058 ORTHO05D007686 3.1e-32 142.1 129 51.9
AUR62034597 Chenopodium quinoa HOM05D006058 ORTHO05D007686 4.1e-32 141.7 95 72.6
AagrBONN_evm.TU.Sc2ySwM_369.269 Anthoceros agrestis HOM05D006058 ORTHO05D007686 5.4e-32 141.4 129 49.6
Mapoly0068s0046 Marchantia polymorpha HOM05D006058 ORTHO05D007686 5.4e-32 141.4 116 54.3
EL10Ac3g06921 Beta vulgaris HOM05D006058 ORTHO05D007686 1.2e-31 140.2 92 71.7
Pp3c3_34830 Physcomitrium patens HOM05D006058 ORTHO05D007686 1.7e-30 136.3 119 52.1
Aa31LG1G18150 Aethionema arabicum HOM05D000706 ORTHO05D001554 6.6e-30 134.4 85 71.8
Sc05g0004330 Simmondsia chinensis HOM05D006058 ORTHO05D007686 8.0e-28 127.5 86 69.8
MBI07_g41268_MAGBIO Magnolia biondii HOM05D002731 ORTHO05D003073 1.5e-26 123.2 90 64.4
CBR_g24266 Chara braunii HOM05D006058 ORTHO05D007686 9.2e-24 114.0 117 45.3
vmacro09159 Vaccinium macrocarpon HOM05D006058 ORTHO05D007686 1.2e-15 87.0 73 58.9
QL12p023442 Quercus lobata HOM05D006058 ORTHO05D007686 5.0e-14 81.6 90 54.4
CAN.G27.69 Capsicum annuum HOM05D005779 ORTHO05D007040 2.4e-08 62.8 42 69.0
CsaV3_7G018800 Cucumis sativus L. HOM05D006058 ORTHO05D000001 5.1e-06 55.1 60 43.3


User provided reference genes

Program Settings