Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 2.8e-131 471.9 221 100.0
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 8.7e-117 423.7 221 87.8
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 1.9e-116 422.5 219 88.6
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 3.3e-116 421.8 218 89.0
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 4.3e-116 421.4 218 89.4
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 7.3e-116 420.6 217 86.2
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 1.3e-115 419.9 217 86.2
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 1.3e-115 419.9 221 87.8
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 2.1e-115 419.1 218 88.5
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 3.6e-115 418.3 219 87.7
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 3.6e-115 418.3 217 86.2
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 4.8e-115 417.9 219 87.2
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 8.1e-115 417.2 221 86.9
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 8.1e-115 417.2 218 89.0
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 1.1e-114 416.8 219 86.3
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 1.1e-114 416.8 221 87.3
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 1.4e-114 416.4 219 87.2
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 1.4e-114 416.4 221 86.0
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 1.8e-114 416.0 218 88.5
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 1.8e-114 416.0 221 85.1
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 1.8e-114 416.0 221 86.9
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 2.4e-114 415.6 217 85.3
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 2.4e-114 415.6 218 88.1
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 3.1e-114 415.2 221 84.6
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 4.0e-114 414.8 221 86.4
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 5.3e-114 414.5 219 86.3
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 5.3e-114 414.5 218 88.1
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 5.3e-114 414.5 217 85.7
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 6.9e-114 414.1 221 86.0
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 6.9e-114 414.1 221 85.5
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 6.9e-114 414.1 214 88.3
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 6.9e-114 414.1 221 85.5
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 9.0e-114 413.7 219 85.4
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 9.0e-114 413.7 219 85.4
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 9.0e-114 413.7 218 88.5
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 1.2e-113 413.3 221 85.1
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 1.2e-113 413.3 221 86.0
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 2.0e-113 412.5 219 85.4
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 2.0e-113 412.5 217 87.1
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 2.6e-113 412.1 221 86.0
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.4e-113 411.8 221 85.5
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 3.4e-113 411.8 221 84.2
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 3.4e-113 411.8 221 86.0
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 4.4e-113 411.4 221 85.1
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 4.4e-113 411.4 221 86.0
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 5.8e-113 411.0 221 85.5
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 9.9e-113 410.2 218 86.2
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 1.3e-112 409.8 218 86.7
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 1.3e-112 409.8 221 83.7
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 1.3e-112 409.8 218 85.8
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 1.7e-112 409.5 219 85.4
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 1.7e-112 409.5 217 85.3
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 2.2e-112 409.1 219 84.9
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 2.2e-112 409.1 219 84.9
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 2.2e-112 409.1 219 84.0
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 2.9e-112 408.7 217 84.8
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 2.9e-112 408.7 217 84.3
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 2.9e-112 408.7 221 84.2
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 4.9e-112 407.9 219 84.0
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 4.9e-112 407.9 221 83.7
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 4.9e-112 407.9 219 85.4
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 4.9e-112 407.9 218 87.2
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 6.4e-112 407.5 217 84.3
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 8.4e-112 407.1 221 83.7
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 1.1e-111 406.8 217 83.9
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 1.1e-111 406.8 217 84.3
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.4e-111 406.4 221 84.6
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 1.4e-111 406.4 221 85.5
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 1.4e-111 406.4 219 85.8
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 1.9e-111 406.0 219 85.4
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 2.4e-111 405.6 221 83.7
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 3.2e-111 405.2 221 82.8
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 3.2e-111 405.2 221 82.8
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 3.2e-111 405.2 221 82.8
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 3.2e-111 405.2 221 83.7
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 5.4e-111 404.4 221 82.8
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 5.4e-111 404.4 221 83.3
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 7.1e-111 404.1 221 83.3
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 9.3e-111 403.7 222 84.7
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 1.2e-110 403.3 221 82.8
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 1.6e-110 402.9 219 82.2
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 1.6e-110 402.9 219 83.6
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 2.1e-110 402.5 221 83.7
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 2.1e-110 402.5 215 87.4
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 2.7e-110 402.1 219 83.1
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 6.0e-110 401.0 210 87.6
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 6.0e-110 401.0 221 81.4
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 7.9e-110 400.6 221 83.7
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 7.9e-110 400.6 221 83.7
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 7.9e-110 400.6 221 84.6
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 7.9e-110 400.6 222 83.8
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 1.0e-109 400.2 221 81.0
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 1.0e-109 400.2 221 83.7
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 1.3e-109 399.8 218 83.9
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 1.7e-109 399.4 219 82.6
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 1.7e-109 399.4 222 82.9
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 2.3e-109 399.1 219 81.7
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 3.0e-109 398.7 216 83.8
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 5.1e-109 397.9 221 81.0
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 6.6e-109 397.5 219 81.3
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 8.7e-109 397.1 221 81.4
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 1.1e-108 396.7 217 83.9
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 1.5e-108 396.4 217 83.4
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 1.5e-108 396.4 217 83.4
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 1.9e-108 396.0 221 80.5
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 3.3e-108 395.2 221 80.5
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 3.3e-108 395.2 221 80.5
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 4.3e-108 394.8 217 83.9
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 4.3e-108 394.8 220 82.7
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 7.4e-108 394.0 217 83.9
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 7.4e-108 394.0 211 86.3
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 1.3e-107 393.3 219 83.6
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 1.6e-107 392.9 221 82.4
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 3.6e-107 391.7 220 80.5
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 3.6e-107 391.7 220 80.5
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 3.6e-107 391.7 221 80.5
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 8.1e-107 390.6 221 79.2
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 8.1e-107 390.6 221 80.1
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 1.8e-106 389.4 208 86.5
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 9.0e-106 387.1 219 79.5
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 9.0e-106 387.1 219 79.5
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 1.5e-105 386.3 215 81.9
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 2.6e-105 385.6 222 78.4
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 3.4e-105 385.2 222 78.8
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 5.5e-103 377.9 219 79.9
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 7.1e-103 377.5 214 81.3
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 9.3e-103 377.1 219 79.0
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 4.8e-99 364.8 217 76.0
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 1.1e-98 363.6 221 73.8
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 2.7e-94 349.0 216 74.1
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 3.5e-94 348.6 224 73.2
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 3.3e-92 342.0 214 73.8
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 1.0e-88 330.5 213 70.4
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 6.3e-83 311.2 220 66.8
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 1.7e-80 303.1 165 83.6
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 6.5e-80 301.2 157 87.9
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 1.0e-77 293.9 152 88.2
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 5.9e-73 278.1 216 60.2
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 3.8e-72 275.4 217 63.6
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 3.3e-60 235.7 135 83.0
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 1.3e-59 233.8 130 80.8
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 4.2e-55 218.8 126 79.4
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 4.8e-51 205.3 147 66.0
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 4.1e-50 202.2 102 89.2
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 2.9e-48 196.1 103 86.4
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 4.7e-46 188.7 96 86.5
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 2.6e-44 183.0 98 82.7
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 9.5e-31 137.9 69 88.4
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 2.1e-14 83.6 49 71.4


User provided reference genes

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