Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g26002 Nelumbo nucifera HOM05D006883 ORTHO05D008624 2.5e-220 768.5 390 100.0
Lj6P670T41 Lonicera japonica HOM05D006883 ORTHO05D008624 1.0e-181 640.2 372 86.0
Aqoxy2G03105 Aquilegia oxysepala HOM05D006883 ORTHO05D008624 1.8e-181 639.4 372 85.5
vmacro08200 Vaccinium macrocarpon HOM05D006883 ORTHO05D008624 6.7e-181 637.5 372 85.8
Rhsim04G0216600 Rhododendron simsii HOM05D006883 ORTHO05D008624 4.8e-179 631.3 372 84.7
Haze_01264 Corylus avellana HOM05D006883 ORTHO05D008624 6.3e-179 630.9 372 86.0
CSS0008645 Camellia sinensis var. sinensis HOM05D006883 ORTHO05D008624 8.2e-179 630.6 363 86.2
Cfa015347 Carpinus fangiana HOM05D006883 ORTHO05D008624 1.4e-178 629.8 372 85.8
CiPaw.02G086300 Carya illinoinensis HOM05D006883 ORTHO05D008624 3.1e-178 628.6 372 85.5
QL06p007513 Quercus lobata HOM05D006883 ORTHO05D008624 3.1e-178 628.6 371 85.2
Manes.15G016500 Manihot esculenta HOM05D006883 ORTHO05D008624 7.0e-178 627.5 372 84.7
TAR633G1607 Trochodendron aralioides HOM05D006883 ORTHO05D008624 1.2e-177 626.7 372 84.1
Actinidia40226 Actinidia chinensis HOM05D006883 ORTHO05D008624 2.6e-177 625.5 365 86.0
Ciclev10005043m.g Citrus clementina HOM05D006883 ORTHO05D008624 2.6e-177 625.5 363 86.8
Peaxi162Scf00386g00096 Petunia axillaris HOM05D006883 ORTHO05D008624 3.5e-177 625.2 363 84.8
Prupe.1G141800 Prunus persica HOM05D006883 ORTHO05D008624 1.0e-176 623.6 365 85.5
CAN.G556.8 Capsicum annuum HOM05D006883 ORTHO05D008624 1.3e-176 623.2 358 86.6
Sopen01g029090 Solanum pennellii HOM05D006883 ORTHO05D008624 1.7e-176 622.9 363 85.1
Actinidia23426 Actinidia chinensis HOM05D006883 ORTHO05D008624 2.9e-176 622.1 390 81.8
FAN17G0491 Fragaria x ananassa HOM05D006883 ORTHO05D008624 2.5e-175 619.0 370 84.9
FAN22G2222 Fragaria x ananassa HOM05D006883 ORTHO05D008624 5.5e-175 617.8 370 84.3
PGSC0003DMG400022678 Solanum tuberosum HOM05D006883 ORTHO05D008624 7.2e-175 617.5 363 84.3
Gorai.011G186200 Gossypium raimondii HOM05D006883 ORTHO05D008624 9.4e-175 617.1 355 86.5
FvH4_4g17240 Fragaria vesca HOM05D006883 ORTHO05D008624 1.2e-174 616.7 369 84.6
FAN12G3260 Fragaria x ananassa HOM05D006883 ORTHO05D008624 1.2e-174 616.7 369 84.6
Potri.008G204900 Populus trichocarpa HOM05D006883 ORTHO05D008624 1.6e-174 616.3 363 84.3
FAN12G0993 Fragaria x ananassa HOM05D006883 ORTHO05D008624 2.1e-174 615.9 369 84.3
DCAR_030562 Daucus carota HOM05D006883 ORTHO05D008624 4.7e-174 614.8 364 82.7
Nitab4.5_0000829g0010 Nicotiana tabacum HOM05D006883 ORTHO05D008624 6.1e-174 614.4 363 84.0
Sabra08G0157100 Salix brachista HOM05D006883 ORTHO05D008624 8.0e-174 614.0 377 81.7
PSO210G3900 Papaver somniferum HOM05D006883 ORTHO05D008624 1.4e-173 613.2 373 81.5
Dinv38322 Davidia involucrata HOM05D006883 ORTHO05D008624 1.8e-173 612.8 346 87.9
RcHm_v2.0_Chr4g0421151 Rosa chinensis HOM05D006883 ORTHO05D008624 1.8e-173 612.8 368 84.8
Gohir.A10G101275 Gossypium hirsutum HOM05D006883 ORTHO05D008624 2.3e-173 612.5 355 85.4
Sed0024317 Sechium edule HOM05D006883 ORTHO05D008624 6.8e-173 610.9 379 80.5
TWI53G1857 Tripterygium wilfordii HOM05D006883 ORTHO05D008624 6.8e-173 610.9 364 83.8
CsaV3_3G014130 Cucumis sativus L. HOM05D006883 ORTHO05D008624 1.2e-172 610.1 382 79.8
Nitab4.5_0002986g0100 Nicotiana tabacum HOM05D006883 ORTHO05D008624 1.2e-172 610.1 363 83.5
PSO170G0113 Papaver somniferum HOM05D006883 ORTHO05D008624 1.2e-172 610.1 373 80.7
CANSAT78G0922 Cannabis sativa HOM05D006883 ORTHO05D008624 1.5e-172 609.8 367 84.2
TWI53G0676 Tripterygium wilfordii HOM05D006883 ORTHO05D008624 2.6e-172 609.0 364 83.5
MD13G1173600 Malus domestica HOM05D006883 ORTHO05D008624 3.4e-172 608.6 369 83.7
Cc03_g02320 Coffea canephora HOM05D006883 ORTHO05D008624 7.5e-172 607.4 367 83.1
arahy.Tifrunner.gnm1.ann1.WI0ZBZ Arachis hypogaea HOM05D006883 ORTHO05D008624 2.2e-171 605.9 375 81.1
PGR004G1631 Punica granatum HOM05D006883 ORTHO05D008624 8.3e-171 604.0 369 81.6
Thecc.04G278100 Theobroma cacao HOM05D006883 ORTHO05D008624 1.4e-170 603.2 355 83.7
arahy.Tifrunner.gnm1.ann1.GN2N7N Arachis hypogaea HOM05D006883 ORTHO05D008624 1.8e-170 602.8 375 80.5
SalBow2G1088 Salvia bowleyana HOM05D006883 ORTHO05D008624 3.1e-170 602.1 394 76.9
Lalb_Chr15g0087031 Lupinus albus HOM05D006883 ORTHO05D008624 7.0e-170 600.9 373 80.2
Eucgr.H03771 Eucalyptus grandis HOM05D006883 ORTHO05D008624 1.2e-169 600.1 366 81.1
MSTRG.10057 Avicennia marina HOM05D006883 ORTHO05D008624 2.0e-169 599.4 372 80.6
Lalb_Chr18g0055701 Lupinus albus HOM05D006883 ORTHO05D008624 2.0e-169 599.4 383 79.6
Glyma.15G097700 Glycine max HOM05D006883 ORTHO05D008624 5.9e-169 597.8 363 82.4
COL.COLO4_13924 Corchorus olitorius HOM05D006883 ORTHO05D008624 1.0e-168 597.0 357 83.8
Glyma.13G215400 Glycine max HOM05D006883 ORTHO05D008624 1.3e-168 596.7 363 82.1
Lsat_1_v5_gn_3_24840 Lactuca sativa HOM05D006883 ORTHO05D008624 1.3e-168 596.7 364 82.4
Atru.BG.87.p Acer truncatum HOM05D006883 ORTHO05D008624 2.9e-168 595.5 349 85.7
Duzib052G0675 Durio zibethinus HOM05D006883 ORTHO05D008624 3.8e-168 595.1 367 80.1
LjContig00389g0025618 Lotus japonicus HOM05D006883 ORTHO05D008624 5.0e-168 594.7 369 79.7
Phvul.006G161600 Phaseolus vulgaris HOM05D006883 ORTHO05D008624 5.0e-168 594.7 372 80.1
HanXRQChr08g0208101 Helianthus annuus HOM05D006883 ORTHO05D008624 2.5e-167 592.4 372 79.6
Oeu044787.1 Olea europaea HOM05D006883 ORTHO05D008624 4.2e-167 591.7 375 80.3
CDE11G0693 Ceratophyllum demersum HOM05D006883 ORTHO05D008624 1.2e-166 590.1 386 76.9
THA.LOC104802726 Tarenaya hassleriana HOM05D006883 ORTHO05D008624 2.1e-166 589.3 391 76.7
Ah.06g192160 Amaranthus hybridus HOM05D006883 ORTHO05D008624 8.0e-166 587.4 364 80.2
ECA246G3623 Erigeron canadensis HOM05D006883 ORTHO05D008624 8.0e-166 587.4 379 77.8
Psat1g187280 Pisum sativum HOM05D006883 ORTHO05D008624 3.0e-165 585.5 373 78.3
AUR62041764 Chenopodium quinoa HOM05D006883 ORTHO05D008624 6.8e-165 584.3 371 79.8
Ca_00572_v3 Cicer arietinum L. HOM05D006883 ORTHO05D008624 1.2e-164 583.6 373 77.5
Thhalv10013668m.g Eutrema salsugineum HOM05D006883 ORTHO05D008624 1.5e-164 583.2 370 78.9
AL6G29930 Arabidopsis lyrata HOM05D006883 ORTHO05D008624 7.5e-164 580.9 370 78.6
Migut.G00206 Erythranthe guttata HOM05D006883 ORTHO05D008624 7.5e-164 580.9 366 78.7
MBI19_g30852_MAGBIO Magnolia biondii HOM05D006883 ORTHO05D008624 2.8e-163 578.9 360 80.6
Sc25g0004770 Simmondsia chinensis HOM05D006883 ORTHO05D008624 4.9e-163 578.2 351 80.6
Carub.0006s1695 Capsella rubella HOM05D006883 ORTHO05D008624 1.4e-162 576.6 362 78.5
Sp6g25680 Schrenkiella parvula HOM05D006883 ORTHO05D008624 1.4e-162 576.6 390 75.1
unitig_748.g8372 Utricularia gibba HOM05D006883 ORTHO05D008624 3.1e-162 575.5 362 79.0
AT5G18660 Arabidopsis thaliana HOM05D006883 ORTHO05D008624 4.1e-162 575.1 370 77.3
CSS0011936 Camellia sinensis var. sinensis HOM05D006883 ORTHO05D008624 5.4e-162 574.7 349 79.7
CARHR194360 Cardamine hirsuta HOM05D006883 ORTHO05D008624 9.1e-162 573.9 370 77.6
AUR62041032 Chenopodium quinoa HOM05D006883 ORTHO05D008624 2.7e-161 572.4 363 78.5
Medtr2g020160 Medicago truncatula HOM05D006883 ORTHO05D008624 2.7e-161 572.4 369 77.2
CSS0009780 Camellia sinensis var. sinensis HOM05D006883 ORTHO05D008624 4.5e-161 571.6 349 79.1
Aa31LG11G10960 Aethionema arabicum HOM05D006883 ORTHO05D008624 8.6e-160 567.4 361 77.3
BcaB08g36654 Brassica carinata HOM05D006883 ORTHO05D008624 1.1e-159 567.0 360 76.9
BcaC04g18657 Brassica carinata HOM05D006883 ORTHO05D008624 5.5e-159 564.7 365 75.6
BolC9t58650H Brassica oleracea HOM05D006883 ORTHO05D008624 5.5e-159 564.7 365 75.6
BraA10t44156Z Brassica rapa HOM05D006883 ORTHO05D008624 3.6e-158 562.0 350 78.0
A10p20920 Brassica napus HOM05D006883 ORTHO05D008624 4.7e-158 561.6 391 72.6
C09p57810 Brassica napus HOM05D006883 ORTHO05D008624 2.3e-157 559.3 364 75.0
EL10Ac4g09099 Beta vulgaris HOM05D006883 ORTHO05D008624 6.8e-157 557.8 342 81.3
ATR0706G234 Amborella trichopoda HOM05D006883 ORTHO05D008624 3.4e-156 555.4 362 76.0
SGA_v2.0_scaffold973G53763 Striga asiatica HOM05D006883 ORTHO05D008624 6.3e-155 551.2 348 79.6
TPR.G1530 Trifolium pratense HOM05D006883 ORTHO05D008624 6.3e-155 551.2 376 74.2
CDE02G1591 Ceratophyllum demersum HOM05D006883 ORTHO05D008624 1.1e-151 540.4 388 71.9
SEGI_20295 Sequoiadendron giganteum HOM05D006883 ORTHO05D008624 7.5e-148 527.7 368 71.5
Mapoly0058s0049 Marchantia polymorpha HOM05D006883 ORTHO05D008624 9.8e-148 527.3 366 70.5
HPP92_006930 Vanilla planifolia HOM05D006883 ORTHO05D008624 1.2e-145 520.4 345 72.2
AagrBONN_evm.TU.Sc2ySwM_369.460 Anthoceros agrestis HOM05D006883 ORTHO05D008624 5.0e-144 515.0 362 70.7
VMungo0540G0878 Vigna mungo HOM05D006883 ORTHO05D008624 2.8e-142 509.2 369 71.5
Pp3c7_3620 Physcomitrium patens HOM05D006883 ORTHO05D008624 4.1e-138 495.4 391 64.5
Zm00001eb016830 Zea mays HOM05D006883 ORTHO05D008624 1.6e-137 493.4 376 65.4
Os03g0351200 Oryza sativa ssp. japonica HOM05D006883 ORTHO05D008624 3.9e-136 488.8 352 67.9
CBR_g77624 Chara braunii HOM05D006883 ORTHO05D008624 2.9e-131 472.6 360 64.2
Gohir.D10G166900 Gossypium hirsutum HOM05D006883 ORTHO05D008624 8.6e-128 461.1 254 89.4
Cpa.g.sc1008.1 Carica papaya HOM05D006883 ORTHO05D008624 1.5e-119 433.7 283 79.5
Cre01.g042800 Chlamydomonas reinhardtii HOM05D006883 ORTHO05D008624 3.1e-117 426.0 363 57.6
MCO03G528 Micromonas commoda HOM05D006883 ORTHO05D008624 8.7e-112 407.9 361 58.2
SMO174G0102 Selaginella moellendorffii HOM05D006883 ORTHO05D008624 1.6e-110 403.7 341 61.6
DCAR_030560 Daucus carota HOM05D006883 ORTHO05D008624 4.9e-107 392.1 233 82.8
MELO3C006606.2 Cucumis melo HOM05D006883 ORTHO05D008624 6.0e-105 385.2 222 84.7
Solyc01g067290.3 Solanum lycopersicum HOM05D006883 ORTHO05D008624 1.1e-95 354.4 192 88.5
DCAR_030558 Daucus carota HOM05D006883 ORTHO05D008624 2.5e-95 353.2 192 87.0
PRCOL_00006445 Prasinoderma coloniale HOM05D006883 ORTHO05D008624 5.3e-69 265.8 337 42.4
Oeu061954.1 Olea europaea HOM05D006883 ORTHO05D008624 9.5e-34 148.7 120 65.0
GSVIVG01017797001 Vitis vinifera HOM05D006883 ORTHO05D008624 1.6e-20 104.8 114 56.1
Migut.M00184 Erythranthe guttata HOM05D006883 ORTHO05D008624 8.9e-16 89.0 71 64.8
Glyma.11G070200 Glycine max HOM05D000342 ORTHO05D000217 1.1e-10 72.0 240 27.1
Glyma.01G172900 Glycine max HOM05D000342 ORTHO05D000217 1.5e-10 71.6 240 27.1
CBR_g37527 Chara braunii HOM05D006026 ORTHO05D007502 1.2e-09 68.6 300 22.7
Peaxi162Scf00003g01433 Petunia axillaris HOM05D005785 ORTHO05D007962 1.8e-08 64.7 399 24.1
SMO011G0028 Selaginella moellendorffii HOM05D006026 ORTHO05D007502 1.8e-08 64.7 331 23.9
AagrBONN_evm.TU.Sc2ySwM_228.3661 Anthoceros agrestis HOM05D006026 ORTHO05D007502 2.4e-08 64.3 318 24.2
SMO134G0234 Selaginella moellendorffii HOM05D000342 ORTHO05D000217 3.1e-08 63.9 246 24.8
Lj5A173T64 Lonicera japonica HOM05D006026 ORTHO05D007502 4.0e-08 63.5 371 22.4
Aqoxy6G00992 Aquilegia oxysepala HOM05D005785 ORTHO05D007962 8.9e-08 62.4 194 32.5
Lj2g0027531 Lotus japonicus HOM05D000342 ORTHO05D000217 1.5e-07 61.6 238 24.8
arahy.Tifrunner.gnm1.ann1.A1R83D Arachis hypogaea HOM05D000342 ORTHO05D000217 2.6e-07 60.8 229 25.8
Rhsim11G0172800 Rhododendron simsii HOM05D005785 ORTHO05D007962 2.6e-07 60.8 210 31.9
Manes.18G022950 Manihot esculenta HOM05D000342 ORTHO05D000217 4.4e-07 60.1 262 27.5
CSS0030803 Camellia sinensis var. sinensis HOM05D005785 ORTHO05D007962 5.8e-07 59.7 197 30.5
CSS0035207 Camellia sinensis var. sinensis HOM05D005785 ORTHO05D007962 7.6e-07 59.3 213 30.5
Glyma.04G001500 Glycine max HOM05D006026 ORTHO05D007502 7.6e-07 59.3 345 22.9
Glyma.01G172700 Glycine max HOM05D000342 ORTHO05D000217 9.9e-07 58.9 229 25.8
Nitab4.5_0000783g0230 Nicotiana tabacum HOM05D006026 ORTHO05D007502 9.9e-07 58.9 385 21.8
Solyc10g051110.1 Solanum lycopersicum HOM05D005785 ORTHO05D007962 9.9e-07 58.9 214 28.0
QL06p046772 Quercus lobata HOM05D000342 ORTHO05D000217 1.3e-06 58.5 252 23.8
AT1G32100 Arabidopsis thaliana HOM05D000342 ORTHO05D000217 1.7e-06 58.2 336 26.2
CAN.G1.48 Capsicum annuum HOM05D005785 ORTHO05D007962 1.7e-06 58.2 215 27.9
Medtr5g020740 Medicago truncatula HOM05D000342 ORTHO05D000217 1.7e-06 58.2 229 24.5
PRCOL_00003783 Prasinoderma coloniale HOM05D005455 ORTHO05D007017 1.7e-06 58.2 209 25.8
SMO146G0207 Selaginella moellendorffii HOM05D005785 ORTHO05D007962 1.7e-06 58.2 176 28.4
Ca_24867_v3 Cicer arietinum L. HOM05D000342 ORTHO05D000217 2.2e-06 57.8 238 23.9
Haze_15072 Corylus avellana HOM05D000342 ORTHO05D000217 2.2e-06 57.8 238 22.7
Pp3c27_8140 Physcomitrium patens HOM05D006026 ORTHO05D007502 2.2e-06 57.8 310 22.6
VMungo1309G0279 Vigna mungo HOM05D006026 ORTHO05D007502 2.2e-06 57.8 350 20.9
Dinv41889 Davidia involucrata HOM05D006026 ORTHO05D007502 2.9e-06 57.4 321 22.7
Glyma.11G070300 Glycine max HOM05D000342 ORTHO05D000217 2.9e-06 57.4 234 25.6
Mapoly0013s0111 Marchantia polymorpha HOM05D006026 ORTHO05D007502 2.9e-06 57.4 341 22.3
Nn6g31746 Nelumbo nucifera HOM05D006026 ORTHO05D007502 2.9e-06 57.4 282 24.1
Sopen10g022810 Solanum pennellii HOM05D005785 ORTHO05D007962 2.9e-06 57.4 213 27.7
VMungo1127G1380 Vigna mungo HOM05D000342 ORTHO05D000217 2.9e-06 57.4 232 27.2
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 3.8e-06 57.0 282 21.3
Psat2g158280 Pisum sativum HOM05D000342 ORTHO05D000217 3.8e-06 57.0 238 23.1
CSS0009314 Camellia sinensis var. sinensis HOM05D006026 ORTHO05D007502 4.9e-06 56.6 322 23.3
Cpa.g.sc20.183 Carica papaya HOM05D006026 ORTHO05D007502 4.9e-06 56.6 259 24.7
CDE05G1234 Ceratophyllum demersum HOM05D006026 ORTHO05D007502 4.9e-06 56.6 258 23.3
CsaV3_7G010200 Cucumis sativus L. HOM05D005785 ORTHO05D007962 4.9e-06 56.6 235 27.7
Manes.04G089200 Manihot esculenta HOM05D000342 ORTHO05D000217 4.9e-06 56.6 228 27.6
Nitab4.5_0009888g0010 Nicotiana tabacum HOM05D006026 ORTHO05D007502 4.9e-06 56.6 387 22.2
TAR376G0854 Trochodendron aralioides HOM05D006026 ORTHO05D007502 4.9e-06 56.6 299 23.1
AUR62007401 Chenopodium quinoa HOM05D000342 ORTHO05D000217 6.4e-06 56.2 248 26.2
SEGI_40956 Sequoiadendron giganteum HOM05D005785 ORTHO05D007962 6.4e-06 56.2 266 27.4
GSVIVG01023933001 Vitis vinifera HOM05D006026 ORTHO05D007502 6.4e-06 56.2 281 24.6
arahy.Tifrunner.gnm1.ann1.7T1TWK Arachis hypogaea HOM05D000342 ORTHO05D000217 8.4e-06 55.8 328 22.0
arahy.Tifrunner.gnm1.ann1.QIC2C7 Arachis hypogaea HOM05D000342 ORTHO05D000217 8.4e-06 55.8 328 22.0
BolC6t39959H Brassica oleracea HOM05D000342 ORTHO05D000217 8.4e-06 55.8 243 28.0
CSS0017921 Camellia sinensis var. sinensis HOM05D006026 ORTHO05D007502 8.4e-06 55.8 281 24.2
Lj1g0012573 Lotus japonicus HOM05D006026 ORTHO05D007502 8.4e-06 55.8 268 23.5
PSO675G4706 Papaver somniferum HOM05D006026 ORTHO05D007502 8.4e-06 55.8 259 24.7
TWI56G0040 Tripterygium wilfordii HOM05D000342 ORTHO05D000217 8.4e-06 55.8 337 24.3


User provided reference genes

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