Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn4g25876 Nelumbo nucifera HOM05D006719 ORTHO05D007063 5.3e-48 194.5 138 100.0
Nn3g21430 Nelumbo nucifera HOM05D006719 ORTHO05D007063 2.7e-23 112.5 149 69.8
Cfa015380 Carpinus fangiana HOM05D006719 ORTHO05D007063 2.9e-17 92.4 130 46.9
Thecc.04G284000 Theobroma cacao HOM05D006719 ORTHO05D007063 1.2e-15 87.0 132 63.6
COL.COLO4_13881 Corchorus olitorius HOM05D006719 ORTHO05D007063 2.7e-15 85.9 134 63.4
Dinv44385 Davidia involucrata HOM05D006719 ORTHO05D007063 2.7e-15 85.9 144 60.4
Ciclev10006148m.g Citrus clementina HOM05D006719 ORTHO05D007063 2.3e-14 82.8 147 60.5
Duzib052G0445 Durio zibethinus HOM05D006719 ORTHO05D007063 5.0e-14 81.6 149 56.4
Potri.010G024600 Populus trichocarpa HOM05D006719 ORTHO05D007063 5.0e-14 81.6 145 61.4
Gorai.011G189600 Gossypium raimondii HOM05D006719 ORTHO05D007063 6.6e-14 81.3 133 63.2
Gohir.D10G170100 Gossypium hirsutum HOM05D006719 ORTHO05D007063 8.6e-14 80.9 133 63.2
Duzib151G0940 Durio zibethinus HOM05D006719 ORTHO05D007063 1.5e-13 80.1 133 60.2
CiPaw.01G149100 Carya illinoinensis HOM05D006719 ORTHO05D007063 1.9e-13 79.7 113 46.9
Peaxi162Scf00534g00017 Petunia axillaris HOM05D006719 ORTHO05D007063 1.9e-13 79.7 147 38.8
Hma1.2p1_2670F.1_g326650 Hydrangea macrophylla HOM05D006719 ORTHO05D007063 2.5e-13 79.3 138 61.6
PSO170G6252 Papaver somniferum HOM05D006719 ORTHO05D007063 3.3e-13 79.0 141 58.9
Gohir.A10G163700 Gossypium hirsutum HOM05D006719 ORTHO05D007063 4.3e-13 78.6 133 63.2
MD13G1169300 Malus domestica HOM05D006719 ORTHO05D007063 4.3e-13 78.6 143 59.4
Gorai.006G263400 Gossypium raimondii HOM05D006719 ORTHO05D007063 5.6e-13 78.2 135 60.7
TAR362G0876 Trochodendron aralioides HOM05D006719 ORTHO05D007063 5.6e-13 78.2 112 68.8
Manes.03G194500 Manihot esculenta HOM05D006719 ORTHO05D007063 7.3e-13 77.8 143 58.7
VMungo1309G0351 Vigna mungo HOM05D006719 ORTHO05D007063 1.2e-12 77.0 125 64.8
CiPaw.02G083300 Carya illinoinensis HOM05D006719 ORTHO05D007063 1.6e-12 76.6 130 61.5
MD16G1170500 Malus domestica HOM05D006719 ORTHO05D007063 2.8e-12 75.9 140 59.3
Potri.008G207500 Populus trichocarpa HOM05D006719 ORTHO05D007063 2.8e-12 75.9 141 59.6
CSS0008404 Camellia sinensis var. sinensis HOM05D006719 ORTHO05D007063 3.6e-12 75.5 142 58.5
CSS0019267 Camellia sinensis var. sinensis HOM05D006719 ORTHO05D007063 3.6e-12 75.5 142 58.5
Peaxi162Scf00024g00041 Petunia axillaris HOM05D006719 ORTHO05D007063 4.7e-12 75.1 148 54.7
Peaxi162Scf00024g00231 Petunia axillaris HOM05D006719 ORTHO05D007063 6.2e-12 74.7 136 58.1
Prupe.1G137900 Prunus persica HOM05D006719 ORTHO05D007063 6.2e-12 74.7 128 63.3
TAR365G1095 Trochodendron aralioides HOM05D006719 ORTHO05D007063 6.2e-12 74.7 128 64.1
GSVIVG01017752001 Vitis vinifera HOM05D006719 ORTHO05D007063 6.2e-12 74.7 154 58.4
MSTRG.21797 Avicennia marina HOM05D006719 ORTHO05D007063 1.1e-11 73.9 133 56.4
Actinidia40259 Actinidia chinensis HOM05D006719 ORTHO05D007063 1.8e-11 73.2 149 57.0
Duzib212G0625 Durio zibethinus HOM05D006719 ORTHO05D007063 1.8e-11 73.2 149 56.4
PSO210G7501 Papaver somniferum HOM05D006719 ORTHO05D007063 2.3e-11 72.8 141 57.4
Phvul.009G247500 Phaseolus vulgaris HOM05D006719 ORTHO05D007063 4.0e-11 72.0 125 64.8
Psat1g153440 Pisum sativum HOM05D006719 ORTHO05D007063 4.0e-11 72.0 133 63.2
Dinv29768 Davidia involucrata HOM05D001303 ORTHO05D001129 1.5e-10 70.1 123 64.2
Lj6g0006694 Lotus japonicus HOM05D006719 ORTHO05D007063 1.5e-10 70.1 128 62.5
Atru.chr4.2828 Acer truncatum HOM05D006719 ORTHO05D007063 3.4e-10 68.9 131 59.5
HanXRQChr08g0227651 Helianthus annuus HOM05D006719 ORTHO05D007063 3.4e-10 68.9 116 63.8
Manes.15G012900 Manihot esculenta HOM05D006719 ORTHO05D007063 3.4e-10 68.9 145 59.3
BcaC07g37932 Brassica carinata HOM05D006719 ORTHO05D007063 4.4e-10 68.6 103 42.7
BolC8t48317H Brassica oleracea HOM05D006719 ORTHO05D007063 4.4e-10 68.6 103 42.7
Cpa.g.sc16.165 Carica papaya HOM05D006719 ORTHO05D007063 4.4e-10 68.6 56 62.5
Gohir.D09G240400 Gossypium hirsutum HOM05D006719 ORTHO05D007063 7.5e-10 67.8 56 66.1
ECA233G1326 Erigeron canadensis HOM05D006719 ORTHO05D007063 9.8e-10 67.4 116 62.9
Gohir.A09G239500 Gossypium hirsutum HOM05D006719 ORTHO05D007063 1.3e-09 67.0 56 66.1
Carub.0007s2587 Capsella rubella HOM05D006719 ORTHO05D007063 4.9e-09 65.1 150 53.3
DCAR_030531 Daucus carota HOM05D006719 ORTHO05D007063 4.9e-09 65.1 143 54.5
MBI19_g42338_MAGBIO Magnolia biondii HOM05D006719 ORTHO05D007063 6.4e-09 64.7 179 46.9
Solyc01g066900.4 Solanum lycopersicum HOM05D006719 ORTHO05D007063 6.4e-09 64.7 147 53.7
Sopen01g028510 Solanum pennellii HOM05D006719 ORTHO05D007063 6.4e-09 64.7 147 53.7
THA.LOC104821772 Tarenaya hassleriana HOM05D006719 ORTHO05D007063 8.3e-09 64.3 113 61.9
Ca_01942_v3 Cicer arietinum L. HOM05D006719 ORTHO05D007063 1.4e-08 63.5 126 61.9
vmacro08144 Vaccinium macrocarpon HOM05D006719 ORTHO05D007063 1.4e-08 63.5 148 54.1
vmacro22972 Vaccinium macrocarpon HOM05D006719 ORTHO05D007063 1.4e-08 63.5 148 54.1
Oeu037752.1 Olea europaea HOM05D006719 ORTHO05D007063 3.2e-08 62.4 147 54.4
A08p11980 Brassica napus HOM05D006719 ORTHO05D007063 4.1e-08 62.0 94 41.5
CANSAT78G1100 Cannabis sativa HOM05D006719 ORTHO05D007063 4.1e-08 62.0 41 73.2
Hund20562 Selenicereus undatus HOM05D006719 ORTHO05D007063 4.1e-08 62.0 133 52.6
Glyma.15G147300 Glycine max HOM05D006719 ORTHO05D007063 5.4e-08 61.6 134 58.2
QL06p008791 Quercus lobata HOM05D006719 ORTHO05D007063 5.4e-08 61.6 42 73.8
FAN07G2874 Fragaria x ananassa HOM05D006719 ORTHO05D007063 7.1e-08 61.2 131 34.4
Sp7g14160 Schrenkiella parvula HOM05D006719 ORTHO05D007063 7.1e-08 61.2 150 53.3
FAN17G0015 Fragaria x ananassa HOM05D006719 ORTHO05D007063 9.2e-08 60.8 155 34.2
RcHm_v2.0_Chr4g0422101 Rosa chinensis HOM05D006719 ORTHO05D007063 9.2e-08 60.8 129 59.7
MBI18_g14088_MAGBIO Magnolia biondii HOM05D000713 ORTHO05D000547 1.6e-07 60.1 125 36.0
ClCG05G006040 Citrullus lanatus HOM05D006719 ORTHO05D007063 2.7e-07 59.3 36 80.6
MELO3C006659.2 Cucumis melo HOM05D006719 ORTHO05D007063 2.7e-07 59.3 36 80.6
CsaV3_3G014580 Cucumis sativus L. HOM05D006719 ORTHO05D007063 2.7e-07 59.3 36 80.6
THA.LOC104820261 Tarenaya hassleriana HOM05D006719 ORTHO05D007063 2.7e-07 59.3 54 61.1
Zm00001eb137600 Zea mays HOM05D006719 ORTHO05D007063 2.7e-07 59.3 116 51.7
SalBow2G1281 Salvia bowleyana HOM05D006719 ORTHO05D007063 3.5e-07 58.9 42 66.7
TWI09G1121 Tripterygium wilfordii HOM05D006719 ORTHO05D007063 4.6e-07 58.5 146 54.8
FvH4_4g17930 Fragaria vesca HOM05D006719 ORTHO05D007063 6.0e-07 58.2 126 54.8
FAN12G0931 Fragaria x ananassa HOM05D006719 ORTHO05D007063 6.0e-07 58.2 126 54.8
BraA08t33189Z Brassica rapa HOM05D006719 ORTHO05D007063 7.8e-07 57.8 143 53.1
Lalb_Chr15g0083521 Lupinus albus HOM05D006719 ORTHO05D007063 1.0e-06 57.4 130 57.7
AL7G39510 Arabidopsis lyrata HOM05D006719 ORTHO05D007063 1.3e-06 57.0 55 56.4
PGSC0003DMG400011322 Solanum tuberosum HOM05D006719 ORTHO05D007063 1.7e-06 56.6 146 51.4
Thhalv10026485m.g Eutrema salsugineum HOM05D006719 ORTHO05D007063 2.3e-06 56.2 133 56.4
Glyma.09G045300 Glycine max HOM05D006719 ORTHO05D007063 2.3e-06 56.2 132 56.8
Medtr2g436860 Medicago truncatula HOM05D006719 ORTHO05D007063 2.3e-06 56.2 52 63.5
SGA_v2.0_scaffold147G36286 Striga asiatica HOM05D006719 ORTHO05D007063 2.3e-06 56.2 56 60.7
Aa31LG10G6320 Aethionema arabicum HOM05D006719 ORTHO05D007063 3.9e-06 55.5 148 53.4
FAN12G0915 Fragaria x ananassa HOM05D006719 ORTHO05D007063 3.9e-06 55.5 113 59.3
TWI53G1176 Tripterygium wilfordii HOM05D006719 ORTHO05D007063 3.9e-06 55.5 150 56.0
Aqoxy2G03000 Aquilegia oxysepala HOM05D000520 ORTHO05D000399 5.1e-06 55.1 129 53.5
Lsat_1_v5_gn_6_15060 Lactuca sativa HOM05D006719 ORTHO05D007063 6.6e-06 54.7 38 73.7
MBI19_g20884_MAGBIO Magnolia biondii HOM05D006719 ORTHO05D007063 8.6e-06 54.3 183 47.0


User provided reference genes

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